Wall clock time and date at job start Sat Apr 11 2020 06:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47535 * 2 1 4 4 C 1.53009 * 109.46882 * 119.99624 * 2 1 3 5 5 N 1.46500 * 109.47121 * 239.99496 * 2 1 3 6 6 C 1.36164 * 119.85657 * 239.70870 * 5 2 1 7 7 C 1.35543 * 119.25801 * 179.73355 * 6 5 2 8 8 C 1.50698 * 120.49927 * 180.24143 * 7 6 5 9 9 N 1.46505 * 109.47065 * 95.31894 * 8 7 6 10 10 C 1.34778 * 119.99795 * 179.97438 * 9 8 7 11 11 O 1.21277 * 119.99792 * 0.02562 * 10 9 8 12 12 C 1.50702 * 119.99791 * 180.02562 * 10 9 8 13 13 S 1.81002 * 109.47060 * 180.02562 * 12 10 9 14 14 C 1.76196 * 99.99751 * 179.97438 * 13 12 10 15 15 H 1.08002 * 120.00274 * 359.97438 * 14 13 12 16 16 C 1.38801 * 119.99751 * 179.97438 * 14 13 12 17 17 N 1.31631 * 120.00150 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99933 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47484 * 90.00163 * 18 16 14 20 20 H 1.48504 * 109.47427 * 210.00313 * 18 16 14 21 21 H 1.48503 * 109.47344 * 330.00033 * 18 16 14 22 22 C 1.40735 * 118.99865 * 0.55748 * 7 6 5 23 23 O 1.35159 * 120.16627 * 179.72853 * 22 7 6 24 24 N 1.32434 * 119.67048 * 359.70905 * 22 7 6 25 25 C 1.33268 * 120.72449 * 359.97438 * 24 22 7 26 26 O 1.21980 * 119.46844 * 180.02562 * 25 24 22 27 27 H 1.09001 * 109.47610 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47071 * 60.00291 * 1 2 3 29 29 H 1.09004 * 109.47091 * 300.00270 * 1 2 3 30 30 H 1.09001 * 109.46935 * 59.99294 * 3 2 1 31 31 H 1.08995 * 109.47251 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.46703 * 299.99934 * 3 2 1 33 33 H 1.09000 * 109.46743 * 60.00372 * 4 2 1 34 34 H 1.09004 * 109.47065 * 179.97438 * 4 2 1 35 35 H 1.08993 * 109.47373 * 300.00416 * 4 2 1 36 36 H 1.08006 * 120.36445 * 359.97438 * 6 5 2 37 37 H 1.08996 * 109.47311 * 215.31690 * 8 7 6 38 38 H 1.09000 * 109.47212 * 335.32210 * 8 7 6 39 39 H 0.96998 * 119.99639 * 359.97438 * 9 8 7 40 40 H 1.09004 * 109.46830 * 299.99806 * 12 10 9 41 41 H 1.09000 * 109.47104 * 60.00102 * 12 10 9 42 42 H 0.96994 * 120.00163 * 179.97438 * 17 16 14 43 43 H 0.96695 * 114.00258 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 7 2.0183 -0.6907 -1.1961 6 6 2.8059 -1.7941 -1.0677 7 6 3.2464 -2.4269 -2.1824 8 6 4.1149 -3.6535 -2.0728 9 7 3.2785 -4.8533 -2.1578 10 6 3.8429 -6.0749 -2.0834 11 8 5.0432 -6.1809 -1.9456 12 6 2.9826 -7.3091 -2.1714 13 16 4.0258 -8.7824 -2.0396 14 6 2.7977 -10.0392 -2.1687 15 1 1.7590 -9.7690 -2.2891 16 6 3.1652 -11.3767 -2.1157 17 7 4.4311 -11.7060 -1.9684 18 14 1.8634 -12.7092 -2.2533 19 1 1.6772 -13.0739 -3.6808 20 1 2.2975 -13.9062 -1.4891 21 1 0.5804 -12.2069 -1.6993 22 6 2.8861 -1.9172 -3.4438 23 8 3.3168 -2.5263 -4.5708 24 7 2.1225 -0.8379 -3.5209 25 6 1.6908 -0.2289 -2.4169 26 8 0.9882 0.7634 -2.5147 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 1.6767 1.9564 0.8899 31 1 3.1300 1.4424 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6766 -1.7489 1.2493 34 1 3.1300 -0.7216 1.2492 35 1 1.6766 -0.2074 2.1393 36 1 3.0732 -2.1631 -0.0885 37 1 4.8410 -3.6585 -2.8857 38 1 4.6394 -3.6432 -1.1173 39 1 2.3185 -4.7684 -2.2676 40 1 2.2565 -7.3045 -1.3584 41 1 2.4582 -7.3190 -3.1269 42 1 4.6879 -12.6406 -1.9310 43 1 3.0166 -2.1024 -5.3864 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154475291.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:12 Heat of formation + Delta-G solvation = -66.894005 kcal Electronic energy + Delta-G solvation = -27052.547237 eV Core-core repulsion = 23032.345007 eV Total energy + Delta-G solvation = -4020.202229 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.50157 -39.63412 -38.99241 -37.53943 -36.71664 -34.81555 -32.96006 -32.44356 -31.72262 -29.31874 -28.45273 -27.87334 -25.82330 -25.38391 -25.17315 -23.31409 -20.77064 -20.44848 -20.05104 -18.73881 -17.94511 -17.05477 -16.82167 -16.36546 -16.09376 -15.82734 -15.22788 -15.05563 -14.81824 -14.79271 -14.45287 -14.35706 -14.28391 -13.94337 -13.66013 -13.20043 -13.09377 -12.82262 -12.77824 -12.65533 -12.50011 -12.43870 -12.10688 -11.80663 -11.74761 -11.56212 -11.07670 -11.03980 -10.95916 -10.77947 -10.47003 -10.03821 -9.83448 -9.56323 -9.08693 -8.95643 -8.85489 -8.25461 -6.51580 -6.23243 -3.93753 0.22805 1.15366 1.90943 2.79188 3.02798 3.06864 3.21277 3.26174 3.29217 3.38497 3.72347 3.78074 3.91842 4.08824 4.19012 4.20455 4.28081 4.31271 4.61885 4.77405 4.87466 4.95004 5.09791 5.12041 5.16187 5.21254 5.23609 5.32286 5.34492 5.51819 5.57135 5.61604 5.73966 5.79168 5.86778 5.88775 6.01397 6.12338 6.51460 6.71233 7.41170 7.58131 7.64612 7.79838 8.33725 8.56521 9.22260 10.84146 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.018607 B = 0.002176 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.469722 B =12864.628838 C =13249.932104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.151 3.849 3 C -0.163 4.163 4 C -0.169 4.169 5 N -0.517 5.517 6 C 0.214 3.786 7 C -0.270 4.270 8 C 0.190 3.810 9 N -0.736 5.736 10 C 0.534 3.466 11 O -0.516 6.516 12 C -0.153 4.153 13 S -0.059 6.059 14 C -0.535 4.535 15 H 0.072 0.928 16 C 0.073 3.927 17 N -0.867 5.867 18 Si 0.918 3.082 19 H -0.277 1.277 20 H -0.282 1.282 21 H -0.272 1.272 22 C 0.472 3.528 23 O -0.436 6.436 24 N -0.616 5.616 25 C 0.657 3.343 26 O -0.530 6.530 27 H 0.059 0.941 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.058 0.942 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.188 0.812 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.397 0.603 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.268 0.732 43 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.585 25.342 4.873 26.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.067 3.933 3 C -0.221 4.221 4 C -0.226 4.226 5 N -0.233 5.233 6 C 0.076 3.924 7 C -0.279 4.279 8 C 0.066 3.934 9 N -0.391 5.391 10 C 0.320 3.680 11 O -0.390 6.390 12 C -0.304 4.304 13 S 0.167 5.833 14 C -0.684 4.684 15 H 0.091 0.909 16 C -0.136 4.136 17 N -0.503 5.503 18 Si 0.745 3.255 19 H -0.203 1.203 20 H -0.208 1.208 21 H -0.197 1.197 22 C 0.270 3.730 23 O -0.229 6.229 24 N -0.374 5.374 25 C 0.359 3.641 26 O -0.404 6.404 27 H 0.078 0.922 28 H 0.105 0.895 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.104 0.896 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.106 0.894 36 H 0.205 0.795 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.230 0.770 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.078 0.922 43 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -3.956 25.770 4.721 26.496 hybrid contribution -2.632 -0.788 -0.179 2.753 sum -6.588 24.982 4.541 26.232 Atomic orbital electron populations 1.22239 0.92084 1.03095 1.04712 1.21024 0.96161 0.93592 0.82515 1.22238 1.01287 0.93854 1.04718 1.22357 1.02189 1.01473 0.96597 1.46866 1.41586 1.24245 1.10564 1.22501 0.85009 0.83964 1.00887 1.19424 1.13699 1.05301 0.89488 1.19674 0.91100 0.79202 1.03472 1.46105 1.10777 1.04971 1.77225 1.20294 0.88756 0.83703 0.75245 1.90710 1.14929 1.86307 1.47050 1.23534 1.03451 0.98476 1.04940 1.85388 1.10387 0.91966 1.95547 1.22864 0.94794 0.92591 1.58124 0.90949 1.24990 0.96062 0.97978 0.94555 1.70013 1.15509 1.18349 1.46399 0.86174 0.80748 0.80259 0.78345 1.20264 1.20759 1.19723 1.20287 0.81582 0.84238 0.86905 1.85088 1.69231 1.52694 1.15923 1.69724 1.24104 1.14442 1.29085 1.17339 0.82430 0.85529 0.78771 1.90938 1.39450 1.25304 1.84758 0.92184 0.89549 0.90560 0.90564 0.92279 0.89563 0.90950 0.91052 0.89428 0.79538 0.89659 0.90389 0.76950 0.89277 0.89202 0.92176 0.72532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.12 8.40 37.16 0.31 -0.81 16 2 C 0.15 0.95 1.02 -131.81 -0.13 0.81 16 3 C -0.16 -1.07 8.40 37.16 0.31 -0.76 16 4 C -0.17 -0.57 7.10 37.16 0.26 -0.31 16 5 N -0.52 -4.23 2.55 -107.86 -0.27 -4.50 16 6 C 0.21 1.37 9.30 -16.59 -0.15 1.22 16 7 C -0.27 -2.18 5.25 -104.64 -0.55 -2.73 16 8 C 0.19 1.87 5.57 -5.19 -0.03 1.84 16 9 N -0.74 -8.71 5.55 -61.47 -0.34 -9.05 16 10 C 0.53 9.22 7.85 -10.98 -0.09 9.13 16 11 O -0.52 -10.96 15.86 5.56 0.09 -10.87 16 12 C -0.15 -2.95 6.16 36.01 0.22 -2.73 16 13 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 14 C -0.54 -14.98 9.50 30.94 0.29 -14.69 16 15 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 16 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 17 N -0.87 -25.80 13.22 55.49 0.73 -25.07 16 18 Si 0.92 21.13 29.55 -169.99 -5.02 16.10 16 19 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 22 C 0.47 4.43 7.89 -16.35 -0.13 4.30 16 23 O -0.44 -3.52 12.80 -17.18 -0.22 -3.74 16 24 N -0.62 -7.20 10.40 -16.72 -0.17 -7.37 16 25 C 0.66 7.88 7.76 -88.44 -0.69 7.20 16 26 O -0.53 -7.75 13.29 4.94 0.07 -7.68 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.09 0.84 6.12 -51.93 -0.32 0.52 16 29 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.09 0.81 6.13 -51.93 -0.32 0.50 16 33 H 0.07 0.22 7.45 -51.93 -0.39 -0.17 16 34 H 0.07 0.18 7.42 -51.93 -0.39 -0.20 16 35 H 0.09 0.21 8.14 -51.93 -0.42 -0.22 16 36 H 0.19 0.63 5.73 -52.48 -0.30 0.33 16 37 H 0.09 0.96 7.77 -51.93 -0.40 0.56 16 38 H 0.08 0.70 8.05 -51.93 -0.42 0.28 16 39 H 0.40 3.85 8.46 -40.82 -0.35 3.51 16 40 H 0.09 1.56 8.14 -51.91 -0.42 1.14 16 41 H 0.09 1.62 8.14 -51.92 -0.42 1.19 16 42 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 43 H 0.42 1.85 8.98 45.56 0.41 2.26 16 LS Contribution 374.02 15.07 5.64 5.64 Total: -1.00 -38.16 374.02 -7.15 -45.31 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -4.97 Total: 0.55 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: -0.46 Total: 4.47 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: -0.06 Total: -45.99 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -0.07 Total: -22.29 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -38.16 -7.15 -45.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154475291.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.583 kcal (2) G-P(sol) polarization free energy of solvation -38.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds