Wall clock time and date at job start Sat Apr 11 2020 06:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47535 * 2 1 4 4 C 1.53009 * 109.46882 * 119.99624 * 2 1 3 5 5 N 1.46500 * 109.47121 * 239.99496 * 2 1 3 6 6 C 1.36164 * 119.85657 * 239.70870 * 5 2 1 7 7 C 1.35543 * 119.25801 * 179.73355 * 6 5 2 8 8 C 1.50698 * 120.49927 * 180.24143 * 7 6 5 9 9 N 1.46505 * 109.47065 * 95.31894 * 8 7 6 10 10 C 1.34778 * 119.99795 * 179.97438 * 9 8 7 11 11 O 1.21277 * 119.99792 * 0.02562 * 10 9 8 12 12 C 1.50702 * 119.99791 * 180.02562 * 10 9 8 13 13 S 1.81002 * 109.47060 * 180.02562 * 12 10 9 14 14 C 1.76196 * 99.99751 * 179.97438 * 13 12 10 15 15 H 1.08002 * 120.00274 * 359.97438 * 14 13 12 16 16 C 1.38801 * 119.99751 * 179.97438 * 14 13 12 17 17 N 1.31631 * 120.00150 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99933 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47484 * 90.00163 * 18 16 14 20 20 H 1.48504 * 109.47427 * 210.00313 * 18 16 14 21 21 H 1.48503 * 109.47344 * 330.00033 * 18 16 14 22 22 C 1.40735 * 118.99865 * 0.55748 * 7 6 5 23 23 O 1.35159 * 120.16627 * 179.72853 * 22 7 6 24 24 N 1.32434 * 119.67048 * 359.70905 * 22 7 6 25 25 C 1.33268 * 120.72449 * 359.97438 * 24 22 7 26 26 O 1.21980 * 119.46844 * 180.02562 * 25 24 22 27 27 H 1.09001 * 109.47610 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47071 * 60.00291 * 1 2 3 29 29 H 1.09004 * 109.47091 * 300.00270 * 1 2 3 30 30 H 1.09001 * 109.46935 * 59.99294 * 3 2 1 31 31 H 1.08995 * 109.47251 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.46703 * 299.99934 * 3 2 1 33 33 H 1.09000 * 109.46743 * 60.00372 * 4 2 1 34 34 H 1.09004 * 109.47065 * 179.97438 * 4 2 1 35 35 H 1.08993 * 109.47373 * 300.00416 * 4 2 1 36 36 H 1.08006 * 120.36445 * 359.97438 * 6 5 2 37 37 H 1.08996 * 109.47311 * 215.31690 * 8 7 6 38 38 H 1.09000 * 109.47212 * 335.32210 * 8 7 6 39 39 H 0.96998 * 119.99639 * 359.97438 * 9 8 7 40 40 H 1.09004 * 109.46830 * 299.99806 * 12 10 9 41 41 H 1.09000 * 109.47104 * 60.00102 * 12 10 9 42 42 H 0.96994 * 120.00163 * 179.97438 * 17 16 14 43 43 H 0.96695 * 114.00258 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 7 2.0183 -0.6907 -1.1961 6 6 2.8059 -1.7941 -1.0677 7 6 3.2464 -2.4269 -2.1824 8 6 4.1149 -3.6535 -2.0728 9 7 3.2785 -4.8533 -2.1578 10 6 3.8429 -6.0749 -2.0834 11 8 5.0432 -6.1809 -1.9456 12 6 2.9826 -7.3091 -2.1714 13 16 4.0258 -8.7824 -2.0396 14 6 2.7977 -10.0392 -2.1687 15 1 1.7590 -9.7690 -2.2891 16 6 3.1652 -11.3767 -2.1157 17 7 4.4311 -11.7060 -1.9684 18 14 1.8634 -12.7092 -2.2533 19 1 1.6772 -13.0739 -3.6808 20 1 2.2975 -13.9062 -1.4891 21 1 0.5804 -12.2069 -1.6993 22 6 2.8861 -1.9172 -3.4438 23 8 3.3168 -2.5263 -4.5708 24 7 2.1225 -0.8379 -3.5209 25 6 1.6908 -0.2289 -2.4169 26 8 0.9882 0.7634 -2.5147 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 1.6767 1.9564 0.8899 31 1 3.1300 1.4424 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6766 -1.7489 1.2493 34 1 3.1300 -0.7216 1.2492 35 1 1.6766 -0.2074 2.1393 36 1 3.0732 -2.1631 -0.0885 37 1 4.8410 -3.6585 -2.8857 38 1 4.6394 -3.6432 -1.1173 39 1 2.3185 -4.7684 -2.2676 40 1 2.2565 -7.3045 -1.3584 41 1 2.4582 -7.3190 -3.1269 42 1 4.6879 -12.6406 -1.9310 43 1 3.0166 -2.1024 -5.3864 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154475291.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:11 Heat of formation + Delta-G solvation = -99.740439 kcal Electronic energy + Delta-G solvation = -27053.971565 eV Core-core repulsion = 23032.345007 eV Total energy + Delta-G solvation = -4021.626558 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -43.21133 -40.62472 -39.99247 -38.33510 -37.37391 -35.89578 -34.55362 -33.66964 -32.68578 -30.60921 -28.90036 -28.38886 -27.67220 -26.49142 -25.88768 -24.04114 -21.73745 -21.38491 -20.75876 -19.83245 -19.40794 -17.93545 -17.68470 -17.41087 -17.14021 -16.85117 -16.69945 -16.44919 -15.79749 -15.62875 -15.52227 -15.10283 -15.02028 -14.84085 -14.72617 -14.41437 -14.28866 -14.03597 -13.36316 -13.24084 -13.18010 -13.13022 -13.02123 -12.96098 -12.86756 -12.67002 -12.58914 -12.28639 -12.07908 -11.75605 -11.69056 -11.20863 -11.11759 -10.96658 -10.80057 -10.22972 -10.06123 -9.66341 -8.61612 -8.31973 -6.08654 -0.40886 0.38736 1.26349 1.31983 1.43852 1.50628 1.61294 1.69955 2.16894 2.29042 2.36133 2.65800 3.02202 3.13338 3.36710 3.37051 3.48574 3.68731 3.76200 3.85346 3.98895 4.04987 4.19386 4.36663 4.55303 4.58185 4.61598 4.64881 4.72824 4.77566 4.79189 4.83322 4.88871 5.01652 5.14691 5.25450 5.30247 5.40983 5.44445 5.45302 6.14077 6.22722 6.53949 6.64764 7.01320 7.09855 7.29993 8.76990 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.018607 B = 0.002176 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.469722 B =12864.628838 C =13249.932104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.144 3.856 3 C -0.160 4.160 4 C -0.166 4.166 5 N -0.511 5.511 6 C 0.237 3.763 7 C -0.275 4.275 8 C 0.195 3.805 9 N -0.709 5.709 10 C 0.539 3.461 11 O -0.561 6.561 12 C -0.131 4.131 13 S -0.148 6.148 14 C -0.545 4.545 15 H 0.081 0.919 16 C 0.014 3.986 17 N -0.910 5.910 18 Si 0.996 3.004 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.258 1.258 22 C 0.473 3.527 23 O -0.440 6.440 24 N -0.648 5.648 25 C 0.649 3.351 26 O -0.569 6.569 27 H 0.061 0.939 28 H 0.051 0.949 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.063 0.937 32 H 0.050 0.950 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.103 0.897 36 H 0.228 0.772 37 H 0.072 0.928 38 H 0.096 0.904 39 H 0.411 0.589 40 H 0.111 0.889 41 H 0.105 0.895 42 H 0.271 0.729 43 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.917 25.469 6.554 27.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.062 3.938 3 C -0.218 4.218 4 C -0.223 4.223 5 N -0.225 5.225 6 C 0.099 3.901 7 C -0.284 4.284 8 C 0.071 3.929 9 N -0.363 5.363 10 C 0.325 3.675 11 O -0.439 6.439 12 C -0.283 4.283 13 S 0.079 5.921 14 C -0.693 4.693 15 H 0.100 0.900 16 C -0.191 4.191 17 N -0.547 5.547 18 Si 0.818 3.182 19 H -0.195 1.195 20 H -0.203 1.203 21 H -0.182 1.182 22 C 0.273 3.727 23 O -0.235 6.235 24 N -0.407 5.407 25 C 0.351 3.649 26 O -0.447 6.447 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.122 0.878 36 H 0.244 0.756 37 H 0.090 0.910 38 H 0.114 0.886 39 H 0.247 0.753 40 H 0.129 0.871 41 H 0.123 0.877 42 H 0.080 0.920 43 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -5.314 25.928 6.392 27.228 hybrid contribution -2.240 -0.656 -0.722 2.444 sum -7.555 25.272 5.670 26.980 Atomic orbital electron populations 1.22204 0.92677 1.02960 1.04019 1.21301 0.95835 0.93773 0.82936 1.22202 1.01491 0.94085 1.04022 1.22403 1.03132 1.01766 0.95043 1.46864 1.41042 1.24421 1.10171 1.23047 0.82696 0.82291 1.02019 1.19224 1.14507 1.05138 0.89533 1.19702 0.90760 0.78460 1.03968 1.45852 1.11707 1.03922 1.74846 1.19911 0.87750 0.84580 0.75297 1.90704 1.16587 1.86965 1.49630 1.23388 1.02528 0.95750 1.06593 1.85532 1.14195 0.96441 1.95893 1.23203 0.95116 0.93190 1.57822 0.90041 1.26085 0.98399 1.00700 0.93927 1.70173 1.17910 1.18945 1.47658 0.84994 0.77940 0.76722 0.78575 1.19528 1.20348 1.18228 1.20430 0.80893 0.83629 0.87705 1.85075 1.69127 1.52812 1.16518 1.69624 1.25570 1.15720 1.29800 1.17464 0.82295 0.85291 0.79865 1.90917 1.41246 1.26993 1.85548 0.91968 0.93030 0.88446 0.88423 0.91811 0.93066 0.89856 0.89592 0.87806 0.75575 0.90976 0.88604 0.75277 0.87077 0.87703 0.92042 0.70958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 8.40 71.98 0.60 -1.38 16 2 C 0.14 1.49 1.02 3.61 0.00 1.50 16 3 C -0.16 -1.89 8.40 71.98 0.60 -1.29 16 4 C -0.17 -0.40 7.10 71.99 0.51 0.12 16 5 N -0.51 -7.43 2.55 -613.36 -1.56 -9.00 16 6 C 0.24 2.26 9.30 83.40 0.78 3.03 16 7 C -0.27 -3.76 5.25 -19.88 -0.10 -3.87 16 8 C 0.20 3.31 5.57 85.63 0.48 3.79 16 9 N -0.71 -14.84 5.55 -466.78 -2.59 -17.43 16 10 C 0.54 17.73 7.85 87.66 0.69 18.42 16 11 O -0.56 -23.58 15.86 -3.02 -0.05 -23.63 16 12 C -0.13 -4.85 6.16 71.24 0.44 -4.41 16 13 S -0.15 -7.90 20.57 -56.49 -1.16 -9.06 16 14 C -0.55 -30.39 9.50 67.95 0.65 -29.74 16 15 H 0.08 4.22 7.80 -2.91 -0.02 4.19 16 16 C 0.01 0.77 5.49 84.86 0.47 1.23 16 17 N -0.91 -54.95 13.22 21.65 0.29 -54.67 16 18 Si 1.00 42.84 29.55 68.60 2.03 44.87 16 19 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 20 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 21 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 22 C 0.47 8.35 7.89 85.21 0.67 9.02 16 23 O -0.44 -6.69 12.80 -84.37 -1.08 -7.77 16 24 N -0.65 -15.08 10.40 -438.81 -4.56 -19.64 16 25 C 0.65 15.55 7.76 179.59 1.39 16.94 16 26 O -0.57 -17.44 13.29 -5.25 -0.07 -17.51 16 27 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.05 1.03 6.12 -2.39 -0.01 1.02 16 29 H 0.10 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.05 1.00 6.13 -2.39 -0.01 0.99 16 33 H 0.08 0.07 7.45 -2.39 -0.02 0.05 16 34 H 0.09 0.00 7.42 -2.38 -0.02 -0.01 16 35 H 0.10 0.00 8.14 -2.39 -0.02 -0.02 16 36 H 0.23 0.31 5.73 -2.91 -0.02 0.29 16 37 H 0.07 1.51 7.77 -2.39 -0.02 1.49 16 38 H 0.10 1.39 8.05 -2.39 -0.02 1.37 16 39 H 0.41 6.57 8.46 -92.71 -0.78 5.78 16 40 H 0.11 3.61 8.14 -2.39 -0.02 3.59 16 41 H 0.10 3.56 8.14 -2.39 -0.02 3.54 16 42 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 43 H 0.43 3.62 8.98 -74.06 -0.66 2.96 16 Total: -1.00 -87.34 374.02 -1.96 -89.31 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -0.38 Total: 11.18 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: 7.18 Total: 13.36 kcal Atomic # 7 Polarization: -92.31 SS G_CDS: -8.43 Total: -100.74 kcal Atomic # 8 Polarization: -47.72 SS G_CDS: -1.20 Total: -48.91 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Atomic # 16 Polarization: -7.90 SS G_CDS: -1.16 Total: -9.06 kcal Total: -87.34 -1.96 -89.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154475291.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.435 kcal (2) G-P(sol) polarization free energy of solvation -87.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds