Wall clock time and date at job start Sat Apr 11 2020 06:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32565 * 121.64350 * 2 1 4 4 S 1.77228 * 105.31733 * 179.97438 * 3 2 1 5 5 C 1.72205 * 94.84902 * 359.80757 * 4 3 2 6 6 O 1.21826 * 127.05803 * 180.19739 * 5 4 3 7 7 N 1.34245 * 105.88219 * 0.32268 * 5 4 3 8 8 C 1.46509 * 121.37577 * 179.88011 * 7 5 4 9 9 C 1.53002 * 109.47086 * 269.71465 * 8 7 5 10 10 C 1.50695 * 109.46884 * 180.02562 * 9 8 7 11 11 O 1.21282 * 120.00091 * 359.97438 * 10 9 8 12 12 N 1.34778 * 119.99880 * 180.02562 * 10 9 8 13 13 C 1.46500 * 120.00113 * 179.97438 * 12 10 9 14 14 H 1.09003 * 110.63926 * 36.69321 * 13 12 10 15 15 C 1.54318 * 110.72583 * 273.54695 * 13 12 10 16 16 N 1.47017 * 107.27582 * 263.65456 * 15 13 12 17 17 C 1.36931 * 125.65325 * 181.02179 * 16 15 13 18 18 H 1.08002 * 120.00103 * 0.02562 * 17 16 15 19 19 C 1.38812 * 120.00429 * 179.97438 * 17 16 15 20 20 N 1.31624 * 119.99535 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00484 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47326 * 270.00576 * 21 19 17 23 23 H 1.48506 * 109.46545 * 30.00326 * 21 19 17 24 24 H 1.48498 * 109.47210 * 150.00037 * 21 19 17 25 25 C 1.47434 * 108.70092 * 1.28441 * 16 15 13 26 26 C 1.55137 * 104.71970 * 335.55455 * 25 16 15 27 27 H 1.09001 * 111.19036 * 279.19165 * 26 25 16 28 28 O 1.42901 * 110.90351 * 155.27291 * 26 25 16 29 29 H 1.08998 * 109.47349 * 270.02383 * 1 2 3 30 30 H 1.08993 * 109.47434 * 30.03092 * 1 2 3 31 31 H 1.09001 * 109.47009 * 150.02652 * 1 2 3 32 32 H 1.08004 * 127.33820 * 359.97242 * 3 2 1 33 33 H 1.08999 * 109.46720 * 149.72005 * 8 7 5 34 34 H 1.08992 * 109.47182 * 29.72165 * 8 7 5 35 35 H 1.09005 * 109.46650 * 60.00317 * 9 8 7 36 36 H 1.08995 * 109.47061 * 300.00781 * 9 8 7 37 37 H 0.97003 * 119.99606 * 359.97438 * 12 10 9 38 38 H 1.08999 * 109.88681 * 144.23069 * 15 13 12 39 39 H 1.09008 * 110.00822 * 23.14131 * 15 13 12 40 40 H 0.97005 * 119.99717 * 179.97438 * 20 19 17 41 41 H 1.08990 * 110.36592 * 94.48188 * 25 16 15 42 42 H 1.08998 * 110.36718 * 216.80729 * 25 16 15 43 43 H 0.96704 * 113.99477 * 67.97804 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2025 1.1286 0.0000 4 16 3.9033 0.6304 0.0008 5 6 3.5607 -1.0572 0.0068 6 8 4.3673 -1.9701 0.0128 7 7 2.2222 -1.1604 0.0006 8 6 1.5577 -2.4661 0.0007 9 6 1.3270 -2.9210 -1.4418 10 6 0.6430 -4.2638 -1.4417 11 8 0.3676 -4.8040 -0.3913 12 7 0.3381 -4.8648 -2.6088 13 6 -0.3263 -6.1705 -2.6088 14 1 -1.0444 -6.2361 -1.7913 15 6 0.7098 -7.3105 -2.5183 16 7 0.9661 -7.7773 -3.8887 17 6 1.8125 -8.7947 -4.2401 18 1 2.3599 -9.3293 -3.4779 19 6 1.9661 -9.1398 -5.5758 20 7 1.2986 -8.4885 -6.5047 21 14 3.1212 -10.5273 -6.0553 22 1 4.4797 -9.9789 -6.2978 23 1 3.1790 -11.5250 -4.9569 24 1 2.6232 -11.1810 -7.2921 25 6 0.1658 -6.9642 -4.8225 26 6 -1.0195 -6.4381 -3.9709 27 1 -1.7988 -7.1936 -3.8710 28 8 -1.5474 -5.2303 -4.5230 29 1 -0.3634 0.0004 1.0276 30 1 -0.3634 0.8896 -0.5143 31 1 -0.3633 -0.8902 -0.5134 32 1 1.8151 2.1368 -0.0004 33 1 0.5996 -2.3861 0.5141 34 1 2.1859 -3.1934 0.5150 35 1 2.2852 -3.0009 -1.9552 36 1 0.6989 -2.1936 -1.9560 37 1 0.5587 -4.4329 -3.4489 38 1 0.3107 -8.1274 -1.9170 39 1 1.6337 -6.9404 -2.0738 40 1 1.4062 -8.7294 -7.4381 41 1 0.7583 -6.1337 -5.2061 42 1 -0.2014 -7.5803 -5.6432 43 1 -1.9901 -5.3479 -5.3747 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219806720.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:52 Heat of formation + Delta-G solvation = -55.115187 kcal Electronic energy + Delta-G solvation = -27598.822774 eV Core-core repulsion = 23579.131313 eV Total energy + Delta-G solvation = -4019.691462 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.31656 -39.73168 -37.93613 -37.74219 -35.15419 -33.85604 -33.60900 -31.86772 -31.37896 -28.90658 -28.11101 -27.08906 -25.25897 -24.40196 -23.34026 -20.94928 -20.51472 -20.31036 -19.80961 -18.34352 -17.76944 -17.14062 -16.91040 -16.59913 -16.24202 -15.72476 -15.53504 -15.13697 -14.88955 -14.53060 -14.08686 -14.01647 -13.98405 -13.72086 -13.50535 -13.08649 -12.88607 -12.81005 -12.61053 -12.41097 -12.31140 -11.65540 -11.50209 -11.42382 -11.38806 -11.18544 -10.99354 -10.90068 -10.27988 -10.25211 -10.13304 -9.96334 -9.89332 -9.60858 -9.27218 -8.82086 -8.67426 -8.22086 -6.96574 -5.76618 -3.18597 0.71461 1.10088 1.53072 1.90455 2.46006 2.75426 3.35253 3.38269 3.41277 3.42545 4.17533 4.34679 4.50785 4.52598 4.54947 4.70126 4.90451 5.00747 5.02891 5.17545 5.20807 5.24082 5.30757 5.34089 5.45498 5.48549 5.63916 5.66011 5.79273 5.85976 6.07221 6.16819 6.41051 6.46862 6.59801 6.90299 7.09236 7.20954 7.49128 7.66181 7.75547 7.97405 8.20644 8.39579 9.10188 9.70580 10.32697 11.27581 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015525 B = 0.002547 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.078229 B =10992.458355 C =11956.018195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.106 3.894 3 C -0.242 4.242 4 S -0.006 6.006 5 C 0.480 3.520 6 O -0.466 6.466 7 N -0.533 5.533 8 C 0.118 3.882 9 C -0.158 4.158 10 C 0.520 3.480 11 O -0.551 6.551 12 N -0.694 5.694 13 C 0.144 3.856 14 H 0.091 0.909 15 C 0.126 3.874 16 N -0.600 5.600 17 C -0.222 4.222 18 H 0.080 0.920 19 C -0.011 4.011 20 N -0.925 5.925 21 Si 0.918 3.082 22 H -0.288 1.288 23 H -0.280 1.280 24 H -0.290 1.290 25 C 0.127 3.873 26 C 0.063 3.937 27 H 0.072 0.928 28 O -0.567 6.567 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.191 0.809 33 H 0.103 0.897 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.406 0.594 38 H 0.037 0.963 39 H 0.032 0.968 40 H 0.253 0.747 41 H 0.020 0.980 42 H 0.112 0.888 43 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.915 20.613 9.865 23.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.005 4.005 3 C -0.380 4.380 4 S 0.237 5.763 5 C 0.161 3.839 6 O -0.344 6.344 7 N -0.254 5.254 8 C -0.007 4.007 9 C -0.199 4.199 10 C 0.305 3.695 11 O -0.429 6.429 12 N -0.344 5.344 13 C 0.039 3.961 14 H 0.109 0.891 15 C -0.001 4.001 16 N -0.328 5.328 17 C -0.350 4.350 18 H 0.098 0.902 19 C -0.206 4.206 20 N -0.574 5.574 21 Si 0.748 3.252 22 H -0.216 1.216 23 H -0.206 1.206 24 H -0.216 1.216 25 C 0.002 3.998 26 C 0.003 3.997 27 H 0.090 0.910 28 O -0.372 6.372 29 H 0.105 0.895 30 H 0.110 0.890 31 H 0.098 0.902 32 H 0.208 0.792 33 H 0.121 0.879 34 H 0.123 0.877 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.241 0.759 38 H 0.054 0.946 39 H 0.050 0.950 40 H 0.064 0.936 41 H 0.038 0.962 42 H 0.129 0.871 43 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -4.092 20.403 10.976 23.527 hybrid contribution -0.576 -1.424 -1.301 2.013 sum -4.667 18.979 9.675 21.809 Atomic orbital electron populations 1.20824 0.86557 1.04772 1.04165 1.19492 0.95923 0.84900 1.00232 1.24878 0.93160 1.01273 1.18723 1.85182 1.08582 1.01451 1.81081 1.21625 0.83843 0.95673 0.82734 1.91011 1.48544 1.42304 1.52585 1.46176 1.06391 1.07900 1.64930 1.21620 0.99903 0.82175 0.96979 1.21968 1.03247 0.96166 0.98491 1.20125 0.78900 0.86402 0.84116 1.90699 1.54627 1.66444 1.31170 1.45673 1.59664 1.20656 1.08445 1.22011 0.94085 0.82674 0.97355 0.89104 1.21750 0.95758 0.93432 0.89168 1.44341 1.50713 1.37990 0.99730 1.19111 1.16693 1.07155 0.92029 0.90244 1.24788 1.00421 0.99917 0.95502 1.69735 1.44846 1.42861 0.99933 0.86019 0.80128 0.81275 0.77780 1.21551 1.20595 1.21590 1.22616 0.88876 0.94704 0.93614 1.23756 0.96450 0.85853 0.93636 0.91011 1.86315 1.77532 1.32869 1.40455 0.89493 0.89031 0.90203 0.79181 0.87884 0.87665 0.88144 0.88335 0.75866 0.94562 0.94999 0.93650 0.96182 0.87079 0.77379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.47 9.30 36.01 0.34 -0.14 16 2 C 0.11 0.79 6.59 -82.51 -0.54 0.25 16 3 C -0.24 -1.66 11.24 28.82 0.32 -1.33 16 4 S -0.01 -0.06 22.97 -107.50 -2.47 -2.52 16 5 C 0.48 6.21 8.27 53.82 0.45 6.66 16 6 O -0.47 -7.79 17.55 5.08 0.09 -7.70 16 7 N -0.53 -5.55 2.60 -117.28 -0.31 -5.85 16 8 C 0.12 1.29 4.27 -4.04 -0.02 1.28 16 9 C -0.16 -1.79 5.93 -27.88 -0.17 -1.95 16 10 C 0.52 7.82 7.83 -10.99 -0.09 7.73 16 11 O -0.55 -9.82 15.71 5.56 0.09 -9.73 16 12 N -0.69 -11.07 4.79 -52.03 -0.25 -11.32 16 13 C 0.14 2.58 3.13 -66.10 -0.21 2.37 16 14 H 0.09 1.59 7.69 -51.93 -0.40 1.19 16 15 C 0.13 2.69 6.98 -3.07 -0.02 2.66 16 16 N -0.60 -14.93 3.39 -169.93 -0.58 -15.51 16 17 C -0.22 -6.09 10.27 -15.06 -0.15 -6.25 16 18 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 19 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 20 N -0.92 -25.93 10.08 55.49 0.56 -25.37 16 21 Si 0.92 21.84 29.55 -169.99 -5.02 16.82 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 C 0.13 2.87 5.62 -2.40 -0.01 2.85 16 26 C 0.06 1.12 4.23 -24.46 -0.10 1.01 16 27 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 28 O -0.57 -8.43 12.64 -35.23 -0.45 -8.88 16 29 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.09 0.24 8.10 -51.93 -0.42 -0.18 16 31 H 0.08 0.41 6.22 -51.93 -0.32 0.08 16 32 H 0.19 0.70 8.06 -52.48 -0.42 0.28 16 33 H 0.10 0.96 6.79 -51.93 -0.35 0.61 16 34 H 0.11 1.39 7.75 -51.93 -0.40 0.99 16 35 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.10 0.87 7.52 -51.93 -0.39 0.48 16 37 H 0.41 6.20 8.21 -40.82 -0.34 5.86 16 38 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.03 0.73 8.05 -51.92 -0.42 0.31 16 40 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.11 2.80 5.85 -51.93 -0.30 2.50 16 43 H 0.38 4.27 9.12 45.56 0.42 4.69 16 LS Contribution 369.97 15.07 5.58 5.58 Total: -1.00 -33.81 369.97 -8.07 -41.88 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -5.01 Total: 7.85 kcal Atomic # 6 Polarization: 15.05 SS G_CDS: -0.30 Total: 14.75 kcal Atomic # 7 Polarization: -57.48 SS G_CDS: -0.57 Total: -58.05 kcal Atomic # 8 Polarization: -26.04 SS G_CDS: -0.27 Total: -26.30 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: -0.06 SS G_CDS: -2.47 Total: -2.52 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.81 -8.07 -41.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219806720.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.236 kcal (2) G-P(sol) polarization free energy of solvation -33.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds