Wall clock time and date at job start Sat Apr 11 2020 06:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32565 * 121.64350 * 2 1 4 4 S 1.77228 * 105.31733 * 179.97438 * 3 2 1 5 5 C 1.72205 * 94.84902 * 359.80757 * 4 3 2 6 6 O 1.21826 * 127.05803 * 180.19739 * 5 4 3 7 7 N 1.34245 * 105.88219 * 0.32268 * 5 4 3 8 8 C 1.46509 * 121.37577 * 179.88011 * 7 5 4 9 9 C 1.53002 * 109.47086 * 269.71465 * 8 7 5 10 10 C 1.50695 * 109.46884 * 180.02562 * 9 8 7 11 11 O 1.21282 * 120.00091 * 359.97438 * 10 9 8 12 12 N 1.34778 * 119.99880 * 180.02562 * 10 9 8 13 13 C 1.46500 * 120.00113 * 179.97438 * 12 10 9 14 14 H 1.09003 * 110.63926 * 36.69321 * 13 12 10 15 15 C 1.54318 * 110.72583 * 273.54695 * 13 12 10 16 16 N 1.47017 * 107.27582 * 263.65456 * 15 13 12 17 17 C 1.36931 * 125.65325 * 181.02179 * 16 15 13 18 18 H 1.08002 * 120.00103 * 0.02562 * 17 16 15 19 19 C 1.38812 * 120.00429 * 179.97438 * 17 16 15 20 20 N 1.31624 * 119.99535 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00484 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47326 * 270.00576 * 21 19 17 23 23 H 1.48506 * 109.46545 * 30.00326 * 21 19 17 24 24 H 1.48498 * 109.47210 * 150.00037 * 21 19 17 25 25 C 1.47434 * 108.70092 * 1.28441 * 16 15 13 26 26 C 1.55137 * 104.71970 * 335.55455 * 25 16 15 27 27 H 1.09001 * 111.19036 * 279.19165 * 26 25 16 28 28 O 1.42901 * 110.90351 * 155.27291 * 26 25 16 29 29 H 1.08998 * 109.47349 * 270.02383 * 1 2 3 30 30 H 1.08993 * 109.47434 * 30.03092 * 1 2 3 31 31 H 1.09001 * 109.47009 * 150.02652 * 1 2 3 32 32 H 1.08004 * 127.33820 * 359.97242 * 3 2 1 33 33 H 1.08999 * 109.46720 * 149.72005 * 8 7 5 34 34 H 1.08992 * 109.47182 * 29.72165 * 8 7 5 35 35 H 1.09005 * 109.46650 * 60.00317 * 9 8 7 36 36 H 1.08995 * 109.47061 * 300.00781 * 9 8 7 37 37 H 0.97003 * 119.99606 * 359.97438 * 12 10 9 38 38 H 1.08999 * 109.88681 * 144.23069 * 15 13 12 39 39 H 1.09008 * 110.00822 * 23.14131 * 15 13 12 40 40 H 0.97005 * 119.99717 * 179.97438 * 20 19 17 41 41 H 1.08990 * 110.36592 * 94.48188 * 25 16 15 42 42 H 1.08998 * 110.36718 * 216.80729 * 25 16 15 43 43 H 0.96704 * 113.99477 * 67.97804 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2025 1.1286 0.0000 4 16 3.9033 0.6304 0.0008 5 6 3.5607 -1.0572 0.0068 6 8 4.3673 -1.9701 0.0128 7 7 2.2222 -1.1604 0.0006 8 6 1.5577 -2.4661 0.0007 9 6 1.3270 -2.9210 -1.4418 10 6 0.6430 -4.2638 -1.4417 11 8 0.3676 -4.8040 -0.3913 12 7 0.3381 -4.8648 -2.6088 13 6 -0.3263 -6.1705 -2.6088 14 1 -1.0444 -6.2361 -1.7913 15 6 0.7098 -7.3105 -2.5183 16 7 0.9661 -7.7773 -3.8887 17 6 1.8125 -8.7947 -4.2401 18 1 2.3599 -9.3293 -3.4779 19 6 1.9661 -9.1398 -5.5758 20 7 1.2986 -8.4885 -6.5047 21 14 3.1212 -10.5273 -6.0553 22 1 4.4797 -9.9789 -6.2978 23 1 3.1790 -11.5250 -4.9569 24 1 2.6232 -11.1810 -7.2921 25 6 0.1658 -6.9642 -4.8225 26 6 -1.0195 -6.4381 -3.9709 27 1 -1.7988 -7.1936 -3.8710 28 8 -1.5474 -5.2303 -4.5230 29 1 -0.3634 0.0004 1.0276 30 1 -0.3634 0.8896 -0.5143 31 1 -0.3633 -0.8902 -0.5134 32 1 1.8151 2.1368 -0.0004 33 1 0.5996 -2.3861 0.5141 34 1 2.1859 -3.1934 0.5150 35 1 2.2852 -3.0009 -1.9552 36 1 0.6989 -2.1936 -1.9560 37 1 0.5587 -4.4329 -3.4489 38 1 0.3107 -8.1274 -1.9170 39 1 1.6337 -6.9404 -2.0738 40 1 1.4062 -8.7294 -7.4381 41 1 0.7583 -6.1337 -5.2061 42 1 -0.2014 -7.5803 -5.6432 43 1 -1.9901 -5.3479 -5.3747 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219806720.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:52 Heat of formation + Delta-G solvation = -81.475019 kcal Electronic energy + Delta-G solvation = -27599.965823 eV Core-core repulsion = 23579.131313 eV Total energy + Delta-G solvation = -4020.834510 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.15287 -41.05627 -39.37514 -38.70722 -36.64795 -35.38667 -34.48971 -33.55118 -32.24328 -30.37019 -29.21393 -28.56940 -26.55280 -25.84863 -24.21431 -22.37451 -22.03001 -21.27514 -21.21463 -19.13677 -19.06307 -18.71432 -18.21331 -17.65699 -17.38743 -17.02648 -16.76283 -16.59375 -15.99741 -15.77628 -15.37306 -15.13054 -14.87415 -14.62234 -14.56165 -14.49242 -14.33261 -13.95743 -13.85231 -13.75015 -13.20599 -13.08754 -12.90359 -12.76452 -12.73567 -12.42348 -12.32369 -12.08660 -12.07044 -11.98242 -11.65834 -11.25361 -11.03659 -10.85881 -10.77040 -10.60433 -10.11123 -8.97372 -8.96813 -7.84094 -5.28935 -0.14000 0.37538 0.86791 1.10832 1.44824 1.45810 1.52969 1.54676 1.65217 2.20027 2.44287 3.08379 3.26760 3.50410 3.60463 3.64098 3.68620 3.78001 3.91219 3.99180 4.22463 4.25161 4.31513 4.41804 4.49498 4.56187 4.63805 4.69102 4.77671 4.82708 4.84346 4.90028 5.01955 5.32243 5.38358 5.42511 5.48508 5.69975 5.73041 6.22055 6.22589 6.49376 6.86388 7.04556 7.15695 7.68767 8.30468 9.16791 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015525 B = 0.002547 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.078229 B =10992.458355 C =11956.018195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.091 3.909 3 C -0.220 4.220 4 S -0.003 6.003 5 C 0.456 3.544 6 O -0.525 6.525 7 N -0.530 5.530 8 C 0.123 3.877 9 C -0.144 4.144 10 C 0.520 3.480 11 O -0.578 6.578 12 N -0.695 5.695 13 C 0.153 3.847 14 H 0.103 0.897 15 C 0.125 3.875 16 N -0.619 5.619 17 C -0.244 4.244 18 H 0.075 0.925 19 C -0.058 4.058 20 N -0.942 5.942 21 Si 0.979 3.021 22 H -0.290 1.290 23 H -0.273 1.273 24 H -0.287 1.287 25 C 0.133 3.867 26 C 0.090 3.910 27 H 0.085 0.915 28 O -0.559 6.559 29 H 0.099 0.901 30 H 0.118 0.882 31 H 0.076 0.924 32 H 0.231 0.769 33 H 0.124 0.876 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.134 0.866 37 H 0.410 0.590 38 H 0.037 0.963 39 H 0.012 0.988 40 H 0.250 0.750 41 H -0.002 1.002 42 H 0.084 0.916 43 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.879 22.977 10.023 26.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.018 4.018 3 C -0.357 4.357 4 S 0.240 5.760 5 C 0.140 3.860 6 O -0.409 6.409 7 N -0.250 5.250 8 C -0.002 4.002 9 C -0.185 4.185 10 C 0.307 3.693 11 O -0.459 6.459 12 N -0.345 5.345 13 C 0.047 3.953 14 H 0.121 0.879 15 C -0.002 4.002 16 N -0.346 5.346 17 C -0.373 4.373 18 H 0.092 0.908 19 C -0.252 4.252 20 N -0.592 5.592 21 Si 0.807 3.193 22 H -0.217 1.217 23 H -0.198 1.198 24 H -0.213 1.213 25 C 0.008 3.992 26 C 0.029 3.971 27 H 0.103 0.897 28 O -0.366 6.366 29 H 0.117 0.883 30 H 0.136 0.864 31 H 0.095 0.905 32 H 0.248 0.752 33 H 0.142 0.858 34 H 0.092 0.908 35 H 0.107 0.893 36 H 0.152 0.848 37 H 0.246 0.754 38 H 0.055 0.945 39 H 0.030 0.970 40 H 0.060 0.940 41 H 0.016 0.984 42 H 0.102 0.898 43 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -6.108 22.834 11.131 26.127 hybrid contribution 0.022 -2.040 -1.332 2.437 sum -6.086 20.794 9.799 23.779 Atomic orbital electron populations 1.20966 0.83803 1.05922 1.05312 1.20060 0.97452 0.83797 1.00526 1.25456 0.90459 1.02760 1.17021 1.85180 1.11534 0.98962 1.80304 1.22103 0.84402 0.96466 0.83001 1.90965 1.50168 1.44415 1.55354 1.46200 1.05831 1.08685 1.64260 1.21493 1.00081 0.82106 0.96555 1.21889 1.02759 0.94740 0.99069 1.20678 0.78120 0.87262 0.83239 1.90686 1.55708 1.67405 1.32058 1.45664 1.59749 1.19970 1.09073 1.21800 0.93189 0.82381 0.97901 0.87927 1.21830 0.96027 0.94805 0.87511 1.44576 1.50718 1.37812 1.01531 1.19385 1.17436 1.08096 0.92337 0.90751 1.25544 1.01984 1.02149 0.95480 1.69954 1.45617 1.43783 0.99813 0.85078 0.77980 0.78784 0.77462 1.21704 1.19776 1.21335 1.22434 0.90051 0.93219 0.93486 1.23301 0.94821 0.86861 0.92115 0.89747 1.86291 1.77353 1.31164 1.41779 0.88297 0.86352 0.90536 0.75238 0.85788 0.90787 0.89255 0.84838 0.75370 0.94471 0.96951 0.94030 0.98363 0.89804 0.75174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.49 9.30 71.24 0.66 0.17 16 2 C 0.09 1.09 6.59 40.71 0.27 1.36 16 3 C -0.22 -2.22 11.24 66.67 0.75 -1.47 16 4 S 0.00 -0.05 22.97 -56.49 -1.30 -1.35 16 5 C 0.46 12.09 8.27 129.87 1.07 13.16 16 6 O -0.53 -18.81 17.55 -4.75 -0.08 -18.89 16 7 N -0.53 -10.53 2.60 -643.42 -1.68 -12.21 16 8 C 0.12 2.64 4.27 86.38 0.37 3.00 16 9 C -0.14 -3.12 5.93 29.85 0.18 -2.94 16 10 C 0.52 15.28 7.83 87.66 0.69 15.96 16 11 O -0.58 -20.41 15.71 -3.03 -0.05 -20.46 16 12 N -0.69 -21.53 4.79 -436.93 -2.09 -23.62 16 13 C 0.15 5.36 3.13 46.18 0.14 5.50 16 14 H 0.10 3.42 7.69 -2.39 -0.02 3.40 16 15 C 0.12 5.41 6.98 86.73 0.61 6.01 16 16 N -0.62 -31.42 3.39 -691.54 -2.35 -33.76 16 17 C -0.24 -13.69 10.27 84.03 0.86 -12.82 16 18 H 0.07 4.12 7.83 -2.91 -0.02 4.09 16 19 C -0.06 -3.25 5.49 84.86 0.47 -2.79 16 20 N -0.94 -53.67 10.08 21.65 0.22 -53.45 16 21 Si 0.98 45.37 29.55 68.60 2.03 47.40 16 22 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 23 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 24 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 25 C 0.13 6.06 5.62 86.93 0.49 6.55 16 26 C 0.09 3.04 4.23 32.07 0.14 3.18 16 27 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 28 O -0.56 -15.20 12.64 -148.98 -1.88 -17.08 16 29 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.12 -0.01 8.10 -2.39 -0.02 -0.03 16 31 H 0.08 0.47 6.22 -2.39 -0.01 0.46 16 32 H 0.23 0.43 8.06 -2.91 -0.02 0.41 16 33 H 0.12 2.10 6.79 -2.39 -0.02 2.09 16 34 H 0.07 2.07 7.75 -2.39 -0.02 2.05 16 35 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 36 H 0.13 1.95 7.52 -2.39 -0.02 1.94 16 37 H 0.41 12.09 8.21 -92.71 -0.76 11.33 16 38 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.01 0.58 8.05 -2.38 -0.02 0.57 16 40 H 0.25 13.81 8.31 -92.70 -0.77 13.04 16 41 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 42 H 0.08 4.30 5.85 -2.39 -0.01 4.29 16 43 H 0.40 7.87 9.12 -74.05 -0.68 7.19 16 Total: -1.00 -76.86 369.97 -0.86 -77.72 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: -0.37 Total: 20.83 kcal Atomic # 6 Polarization: 28.19 SS G_CDS: 6.69 Total: 34.88 kcal Atomic # 7 Polarization: -117.15 SS G_CDS: -5.90 Total: -123.05 kcal Atomic # 8 Polarization: -54.42 SS G_CDS: -2.01 Total: -56.43 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Atomic # 16 Polarization: -0.05 SS G_CDS: -1.30 Total: -1.35 kcal Total: -76.86 -0.86 -77.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219806720.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.752 kcal (2) G-P(sol) polarization free energy of solvation -76.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds