Wall clock time and date at job start Sat Apr 11 2020 06:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47262 * 2 1 4 4 H 1.09004 * 109.46812 * 304.99956 * 3 2 1 5 5 N 1.46498 * 109.47036 * 65.00021 * 3 2 1 6 6 C 1.34777 * 119.99828 * 274.72131 * 5 3 2 7 7 O 1.21593 * 119.99949 * 0.28071 * 6 5 3 8 8 N 1.34777 * 120.00128 * 180.27942 * 6 5 3 9 9 C 1.46499 * 120.00065 * 180.02562 * 8 6 5 10 10 C 1.50703 * 109.47138 * 179.97438 * 9 8 6 11 11 H 1.08001 * 120.00043 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00213 * 179.97438 * 10 9 8 13 13 N 1.31508 * 120.00019 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 119.99907 * 0.02562 * 12 10 9 15 15 H 1.48502 * 109.47496 * 89.99791 * 14 12 10 16 16 H 1.48494 * 109.47146 * 210.00132 * 14 12 10 17 17 H 1.48504 * 109.46915 * 329.99781 * 14 12 10 18 18 C 1.50701 * 109.47247 * 185.00035 * 3 2 1 19 19 C 1.38261 * 119.99753 * 279.72702 * 18 3 2 20 20 C 1.38212 * 119.99700 * 179.76623 * 19 18 3 21 21 C 1.38259 * 120.00095 * 0.48134 * 20 19 18 22 22 C 1.38211 * 119.99877 * 359.79322 * 21 20 19 23 23 S 1.76199 * 119.99976 * 179.97438 * 22 21 20 24 24 N 1.65596 * 107.21885 * 269.97893 * 23 22 21 25 25 O 1.42102 * 106.39957 * 23.52232 * 23 22 21 26 26 O 1.42106 * 106.39994 * 156.43638 * 23 22 21 27 27 C 1.38212 * 120.00288 * 99.99783 * 18 3 2 28 28 H 1.09000 * 109.46616 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47004 * 300.00349 * 1 2 3 30 30 H 1.08997 * 109.46461 * 60.00164 * 1 2 3 31 31 H 1.09000 * 109.47004 * 239.99651 * 2 1 3 32 32 H 1.09005 * 109.47038 * 120.00011 * 2 1 3 33 33 H 0.97001 * 120.00384 * 95.00578 * 5 3 2 34 34 H 0.97000 * 119.99549 * 359.97438 * 8 6 5 35 35 H 1.09000 * 109.47602 * 299.99940 * 9 8 6 36 36 H 1.09006 * 109.46868 * 59.99976 * 9 8 6 37 37 H 0.97010 * 119.99768 * 180.02562 * 13 12 10 38 38 H 1.07998 * 120.00341 * 359.97438 * 19 18 3 39 39 H 1.08007 * 120.00085 * 180.25322 * 20 19 18 40 40 H 1.07996 * 119.99929 * 179.76607 * 21 20 19 41 41 H 0.96998 * 119.99780 * 149.99834 * 24 23 22 42 42 H 0.96994 * 120.00294 * 329.99670 * 24 23 22 43 43 H 1.08001 * 119.99476 * 0.02562 * 27 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 7 1.6525 2.0974 1.2518 6 6 0.4374 2.6692 1.3650 7 8 -0.3392 2.6370 0.4299 8 7 0.0829 3.2767 2.5147 9 6 -1.2382 3.8978 2.6379 10 6 -1.3832 4.5019 4.0109 11 1 -0.5722 4.4308 4.7206 12 6 -2.5507 5.1464 4.3608 13 7 -2.6770 5.6741 5.5587 14 14 -3.9532 5.2702 3.1331 15 1 -4.8487 4.0952 3.2844 16 1 -4.7229 6.5149 3.3847 17 1 -3.4028 5.2988 1.7541 18 6 3.5420 1.4443 -0.1238 19 6 4.3277 1.2086 0.9892 20 6 5.7050 1.2054 0.8746 21 6 6.2974 1.4478 -0.3509 22 6 5.5120 1.6890 -1.4624 23 16 6.2669 1.9986 -3.0241 24 7 6.5009 3.6339 -3.1399 25 8 7.5596 1.4112 -2.9683 26 8 5.3014 1.6605 -4.0104 27 6 4.1342 1.6870 -1.3488 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 2.2720 2.1232 1.9978 34 1 0.7023 3.3020 3.2608 35 1 -1.3447 4.6780 1.8842 36 1 -2.0100 3.1423 2.4904 37 1 -3.4987 6.1272 5.8050 38 1 3.8651 1.0236 1.9474 39 1 6.3188 1.0173 1.7432 40 1 7.3737 1.4491 -0.4396 41 1 7.2433 3.9821 -3.6580 42 1 5.8955 4.2435 -2.6897 43 1 3.5205 1.8759 -2.2173 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246663766.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:55 Heat of formation + Delta-G solvation = -114.958629 kcal Electronic energy + Delta-G solvation = -27152.617097 eV Core-core repulsion = 23130.330629 eV Total energy + Delta-G solvation = -4022.286468 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.46634 -40.23923 -38.27537 -37.21912 -36.94835 -35.92841 -34.49022 -34.06407 -33.17204 -32.32641 -32.18550 -29.72405 -27.13382 -24.60665 -24.10867 -23.41439 -22.21011 -21.61651 -20.41974 -20.02411 -19.13473 -18.35555 -18.29640 -17.82596 -17.34128 -16.95039 -16.78702 -16.59222 -16.29542 -15.77625 -15.52959 -15.39608 -15.00284 -14.85554 -14.66406 -14.34986 -14.16639 -13.96327 -13.52002 -13.28891 -13.25799 -13.20398 -13.15872 -13.02762 -12.94606 -12.68561 -12.50703 -12.00797 -11.91753 -11.87719 -11.81206 -11.62654 -11.32945 -11.15534 -10.90056 -10.45796 -10.23777 -9.95056 -9.64867 -8.38548 -6.44816 -0.63549 -0.26942 0.16765 1.34272 1.36665 1.49416 1.84378 2.13424 2.26956 2.29795 2.41210 2.75361 2.97596 3.25843 3.49250 3.60904 3.80822 3.97467 4.03025 4.14025 4.17620 4.34796 4.44234 4.59324 4.70607 4.79687 4.85130 4.90141 4.98369 5.02957 5.08954 5.14628 5.21862 5.24593 5.26562 5.28128 5.46260 5.60971 5.61449 5.75416 5.99160 6.29520 6.31792 6.57628 7.16371 7.28960 7.72261 8.76121 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.018575 B = 0.002302 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.014200 B =12162.950999 C =12264.514531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.123 4.123 3 C 0.204 3.796 4 H 0.080 0.920 5 N -0.728 5.728 6 C 0.698 3.302 7 O -0.629 6.629 8 N -0.724 5.724 9 C 0.254 3.746 10 C -0.543 4.543 11 H 0.059 0.941 12 C 0.027 3.973 13 N -0.932 5.932 14 Si 0.937 3.063 15 H -0.266 1.266 16 H -0.275 1.275 17 H -0.260 1.260 18 C -0.114 4.114 19 C -0.054 4.054 20 C -0.131 4.131 21 C -0.022 4.022 22 C -0.674 4.674 23 S 2.726 3.274 24 N -1.234 6.234 25 O -0.990 6.990 26 O -0.997 6.997 27 C -0.023 4.023 28 H 0.057 0.943 29 H 0.035 0.965 30 H 0.042 0.958 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.407 0.593 34 H 0.403 0.597 35 H 0.010 0.990 36 H 0.008 0.992 37 H 0.272 0.728 38 H 0.150 0.850 39 H 0.165 0.835 40 H 0.159 0.841 41 H 0.430 0.570 42 H 0.428 0.572 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.772 -8.792 -13.092 27.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.161 4.161 3 C 0.099 3.901 4 H 0.099 0.901 5 N -0.386 5.386 6 C 0.398 3.602 7 O -0.510 6.510 8 N -0.377 5.377 9 C 0.129 3.871 10 C -0.581 4.581 11 H 0.077 0.923 12 C -0.174 4.174 13 N -0.571 5.571 14 Si 0.760 3.240 15 H -0.191 1.191 16 H -0.200 1.200 17 H -0.184 1.184 18 C -0.115 4.115 19 C -0.072 4.072 20 C -0.150 4.150 21 C -0.042 4.042 22 C -0.763 4.763 23 S 2.815 3.185 24 N -0.913 5.913 25 O -0.980 6.980 26 O -0.986 6.986 27 C -0.043 4.043 28 H 0.076 0.924 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.103 0.897 32 H 0.097 0.903 33 H 0.244 0.756 34 H 0.238 0.762 35 H 0.028 0.972 36 H 0.026 0.974 37 H 0.081 0.919 38 H 0.168 0.832 39 H 0.183 0.817 40 H 0.177 0.823 41 H 0.263 0.737 42 H 0.258 0.742 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 22.130 -9.529 -14.447 28.093 hybrid contribution -0.798 0.911 1.156 1.674 sum 21.332 -8.618 -13.290 26.570 Atomic orbital electron populations 1.21718 0.96090 1.00464 1.01505 1.21948 0.95644 0.94963 1.03580 1.19668 0.89688 0.93897 0.86838 0.90145 1.45031 1.15304 1.60855 1.17401 1.16095 0.82641 0.78432 0.83057 1.90867 1.53228 1.66744 1.40176 1.45115 1.18836 1.59166 1.14615 1.18905 0.80939 0.91813 0.95396 1.21284 1.02283 1.36494 0.98069 0.92265 1.25566 1.00811 0.94150 0.96836 1.69979 1.28461 1.37677 1.20965 0.85871 0.79527 0.78456 0.80106 1.19121 1.19986 1.18379 1.19961 0.94295 1.02592 0.94674 1.21600 0.94371 0.92620 0.98619 1.21650 0.94715 0.99881 0.98707 1.21296 1.00914 0.90713 0.91228 1.30519 1.03749 1.20314 1.21670 1.00558 0.72353 0.72685 0.72878 1.52766 1.44154 1.25914 1.68487 1.93560 1.40623 1.76659 1.87109 1.93592 1.63875 1.83153 1.58018 1.20898 0.93000 0.92350 0.98020 0.92416 0.94603 0.93897 0.89684 0.90298 0.75574 0.76166 0.97247 0.97379 0.91904 0.83202 0.81741 0.82341 0.73692 0.74205 0.83866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.87 8.52 71.98 0.61 -3.26 16 2 C -0.12 -2.57 5.59 30.60 0.17 -2.40 16 3 C 0.20 4.51 2.46 44.24 0.11 4.62 16 4 H 0.08 2.14 7.43 -2.39 -0.02 2.12 16 5 N -0.73 -17.85 4.98 -461.41 -2.30 -20.15 16 6 C 0.70 24.97 7.14 179.05 1.28 26.25 16 7 O -0.63 -27.22 13.49 -4.01 -0.05 -27.28 16 8 N -0.72 -27.96 5.55 -482.28 -2.68 -30.63 16 9 C 0.25 12.23 4.50 85.63 0.38 12.62 16 10 C -0.54 -29.46 9.83 25.60 0.25 -29.21 16 11 H 0.06 3.36 7.84 -2.91 -0.02 3.34 16 12 C 0.03 1.49 5.47 84.66 0.46 1.95 16 13 N -0.93 -55.06 13.96 21.45 0.30 -54.76 16 14 Si 0.94 43.73 27.47 68.60 1.88 45.62 16 15 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 16 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 17 H -0.26 -12.03 6.54 99.48 0.65 -11.37 16 18 C -0.11 -1.93 4.96 -19.86 -0.10 -2.03 16 19 C -0.05 -0.68 9.06 22.27 0.20 -0.48 16 20 C -0.13 -1.35 10.05 22.27 0.22 -1.12 16 21 C -0.02 -0.27 9.52 22.27 0.21 -0.05 16 22 C -0.67 -9.79 5.97 22.27 0.13 -9.65 16 23 S 2.73 40.24 6.28 -56.49 -0.35 39.88 16 24 N -1.23 -8.98 9.52 37.02 0.35 -8.63 16 25 O -0.99 -19.50 17.28 -128.00 -2.21 -21.71 16 26 O -1.00 -22.45 17.28 -128.00 -2.21 -24.66 16 27 C -0.02 -0.39 9.14 22.27 0.20 -0.18 16 28 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.03 1.19 5.66 -2.39 -0.01 1.18 16 30 H 0.04 1.31 7.85 -2.39 -0.02 1.30 16 31 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.08 1.41 8.14 -2.38 -0.02 1.40 16 33 H 0.41 7.37 6.87 -92.71 -0.64 6.74 16 34 H 0.40 13.46 8.34 -92.71 -0.77 12.69 16 35 H 0.01 0.49 7.20 -2.39 -0.02 0.47 16 36 H 0.01 0.42 7.57 -2.38 -0.02 0.40 16 37 H 0.27 14.99 8.31 -92.70 -0.77 14.22 16 38 H 0.15 1.32 6.90 -2.91 -0.02 1.30 16 39 H 0.17 0.75 8.06 -2.91 -0.02 0.72 16 40 H 0.16 1.35 7.62 -2.91 -0.02 1.33 16 41 H 0.43 1.65 8.96 -96.75 -0.87 0.78 16 42 H 0.43 1.67 8.96 -96.75 -0.87 0.81 16 43 H 0.14 2.39 7.60 -2.91 -0.02 2.37 16 Total: -1.00 -80.39 368.37 -5.23 -85.62 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: -2.10 Total: 19.65 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: 4.15 Total: -2.94 kcal Atomic # 7 Polarization: -109.86 SS G_CDS: -4.32 Total: -114.18 kcal Atomic # 8 Polarization: -69.17 SS G_CDS: -4.48 Total: -73.65 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 1.88 Total: 45.62 kcal Atomic # 16 Polarization: 40.24 SS G_CDS: -0.35 Total: 39.88 kcal Total: -80.39 -5.23 -85.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246663766.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.343 kcal (2) G-P(sol) polarization free energy of solvation -80.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds