Wall clock time and date at job start Sat Apr 11 2020 06:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.46974 * 2 1 4 4 N 1.33695 * 126.27488 * 270.18299 * 3 2 1 5 5 C 1.30618 * 108.99534 * 180.27314 * 4 3 2 6 6 O 1.33672 * 109.15299 * 359.73329 * 5 4 3 7 7 C 1.35340 * 107.68563 * 0.02562 * 6 5 4 8 8 C 1.46725 * 126.64404 * 180.02562 * 7 6 5 9 9 O 1.21686 * 119.99841 * 180.02562 * 8 7 6 10 10 N 1.34769 * 119.99601 * 0.02562 * 8 7 6 11 11 C 1.46505 * 119.99686 * 180.02562 * 10 8 7 12 12 H 1.09002 * 109.47068 * 324.99893 * 11 10 8 13 13 C 1.53002 * 109.47411 * 84.99974 * 11 10 8 14 14 C 1.52997 * 109.47212 * 204.99833 * 11 10 8 15 15 N 1.46500 * 109.47170 * 54.99826 * 14 11 10 16 16 C 1.34777 * 120.00168 * 180.02562 * 15 14 11 17 17 O 1.21278 * 119.99916 * 359.97438 * 16 15 14 18 18 C 1.50698 * 119.99931 * 180.02562 * 16 15 14 19 19 S 1.81002 * 109.47028 * 179.97438 * 18 16 15 20 20 C 1.76198 * 100.00098 * 179.97438 * 19 18 16 21 21 H 1.08007 * 119.99909 * 0.02562 * 20 19 18 22 22 C 1.38805 * 120.00376 * 180.02562 * 20 19 18 23 23 N 1.31632 * 119.99430 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00194 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47264 * 59.99485 * 24 22 20 26 26 H 1.48494 * 109.47060 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47197 * 299.99742 * 24 22 20 28 28 H 1.08994 * 109.47464 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47015 * 300.00522 * 1 2 3 30 30 H 1.09002 * 109.46877 * 59.99899 * 1 2 3 31 31 H 1.08994 * 109.47271 * 240.00145 * 2 1 3 32 32 H 1.09002 * 109.46877 * 120.00101 * 2 1 3 33 33 H 1.07997 * 125.42276 * 179.71110 * 5 4 3 34 34 H 0.97000 * 120.00680 * 0.02562 * 10 8 7 35 35 H 1.09002 * 109.47075 * 59.99363 * 13 11 10 36 36 H 1.08996 * 109.47407 * 180.02562 * 13 11 10 37 37 H 1.09000 * 109.46986 * 300.00092 * 13 11 10 38 38 H 1.08998 * 109.47192 * 174.99746 * 14 11 10 39 39 H 1.09000 * 109.47325 * 294.99862 * 14 11 10 40 40 H 0.97004 * 120.00188 * 0.02562 * 15 14 11 41 41 H 1.09002 * 109.47475 * 299.99556 * 18 16 15 42 42 H 1.09001 * 109.47706 * 59.99630 * 18 16 15 43 43 H 0.97003 * 119.99249 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2927 2.1678 -1.0778 5 6 2.7152 3.3413 -0.6899 6 8 2.7319 3.3817 0.6461 7 6 2.3018 2.1812 1.0992 8 6 2.1578 1.7749 2.5018 9 8 1.7580 0.6582 2.7737 10 7 2.4683 2.6385 3.4887 11 6 2.3250 2.2327 4.8891 12 1 1.4630 1.5732 4.9899 13 6 3.5876 1.4941 5.3378 14 6 2.1228 3.4732 5.7614 15 7 0.9838 4.2444 5.2573 16 6 0.6173 5.3860 5.8729 17 8 1.2303 5.7746 6.8446 18 6 -0.5547 6.1789 5.3546 19 16 -0.7939 7.6465 6.3866 20 6 -2.1841 8.3660 5.5778 21 1 -2.6151 7.8835 4.7130 22 6 -2.7255 9.5529 6.0521 23 7 -2.2005 10.1406 7.1064 24 14 -4.1999 10.3152 5.1951 25 1 -5.3388 9.3628 5.2282 26 1 -4.5834 11.5693 5.8916 27 1 -3.8498 10.6191 3.7842 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.0051 4.1500 -1.3443 34 1 2.7866 3.5288 3.2719 35 1 4.4495 2.1536 5.2369 36 1 3.4808 1.1917 6.3795 37 1 3.7317 0.6103 4.7163 38 1 1.9278 3.1669 6.7891 39 1 3.0212 4.0897 5.7304 40 1 0.4933 3.9334 4.4803 41 1 -0.3603 6.4849 4.3267 42 1 -1.4531 5.5624 5.3865 43 1 -2.5787 10.9702 7.4376 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284201645.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:27 Heat of formation + Delta-G solvation = -60.746204 kcal Electronic energy + Delta-G solvation = -26649.289271 eV Core-core repulsion = 22629.353630 eV Total energy + Delta-G solvation = -4019.935641 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.87591 -40.29526 -39.14817 -36.83374 -35.96196 -33.78978 -33.34059 -32.45663 -31.79211 -29.86231 -29.38650 -26.13626 -25.45497 -25.06227 -24.02478 -22.43079 -21.20653 -20.94621 -20.42047 -18.80404 -17.87019 -17.31580 -16.99229 -16.89608 -16.32869 -15.97498 -15.34597 -15.16024 -15.13478 -14.82952 -14.61614 -14.33948 -14.09183 -13.77975 -13.52641 -13.19513 -13.07528 -12.99253 -12.96236 -12.61326 -12.32972 -11.89098 -11.86220 -11.53584 -11.41612 -11.39956 -11.27512 -11.07578 -11.06011 -10.79506 -10.50159 -9.86538 -9.75712 -9.49805 -9.31939 -9.10034 -9.02185 -8.28416 -6.53770 -6.24473 -3.95473 0.38183 1.99745 2.00794 2.63884 2.67432 2.96783 3.01513 3.21548 3.25442 3.28484 3.59281 3.64395 4.17689 4.20037 4.25777 4.36408 4.71857 4.84497 4.90421 4.97877 5.05720 5.08116 5.10711 5.11029 5.24997 5.28479 5.34418 5.45343 5.56767 5.63432 5.68370 5.70904 5.81653 5.82653 5.83506 5.93356 6.01190 6.08865 6.46304 6.84875 7.15989 7.55837 7.57301 7.58205 8.32134 8.50787 9.20815 10.82891 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011528 B = 0.002454 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2428.332354 B =11407.152680 C =12917.569547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.053 4.053 3 C 0.087 3.913 4 N -0.493 5.493 5 C 0.208 3.792 6 O -0.190 6.190 7 C -0.119 4.119 8 C 0.612 3.388 9 O -0.509 6.509 10 N -0.715 5.715 11 C 0.132 3.868 12 H 0.101 0.899 13 C -0.161 4.161 14 C 0.113 3.887 15 N -0.741 5.741 16 C 0.533 3.467 17 O -0.515 6.515 18 C -0.154 4.154 19 S -0.058 6.058 20 C -0.537 4.537 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.100 0.900 33 H 0.258 0.742 34 H 0.408 0.592 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.398 0.602 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.821 -19.726 -14.093 26.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.090 4.090 3 C -0.037 4.037 4 N -0.222 5.222 5 C -0.018 4.018 6 O -0.076 6.076 7 C -0.174 4.174 8 C 0.398 3.602 9 O -0.386 6.386 10 N -0.367 5.367 11 C 0.027 3.973 12 H 0.119 0.881 13 C -0.220 4.220 14 C -0.012 4.012 15 N -0.396 5.396 16 C 0.319 3.681 17 O -0.389 6.389 18 C -0.305 4.305 19 S 0.168 5.832 20 C -0.685 4.685 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.100 0.900 32 H 0.118 0.882 33 H 0.273 0.727 34 H 0.244 0.756 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.104 0.896 39 H 0.092 0.908 40 H 0.232 0.768 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 12.512 -19.829 -12.676 26.654 hybrid contribution -1.543 0.847 -1.710 2.454 sum 10.969 -18.983 -14.387 26.223 Atomic orbital electron populations 1.21644 0.93569 1.02431 1.02177 1.20185 0.96823 0.87634 1.04395 1.22114 0.97070 0.98183 0.86332 1.70378 1.17073 1.03325 1.31384 1.28416 0.96470 0.97543 0.79325 1.84513 1.64502 1.33976 1.24571 1.22863 1.12862 0.85513 0.96206 1.16285 0.77772 0.84799 0.81353 1.90878 1.46471 1.19443 1.81849 1.46041 1.67183 1.17447 1.05990 1.21368 1.00475 0.96350 0.79066 0.88125 1.22119 0.96669 1.00829 1.02399 1.21624 0.90287 0.91243 0.98045 1.46009 1.33922 1.25411 1.34295 1.20322 0.84829 0.79974 0.82977 1.90711 1.54154 1.68281 1.25725 1.23535 0.98014 1.03531 1.05397 1.85383 1.41055 1.18315 1.38437 1.22824 1.16848 1.11379 1.17456 0.90992 1.24993 0.97588 0.95926 0.95039 1.70008 1.40116 1.17940 1.22208 0.86220 0.81489 0.78404 0.79375 1.19918 1.20782 1.19935 0.91570 0.92282 0.92627 0.90018 0.88199 0.72670 0.75601 0.91865 0.90682 0.91456 0.89609 0.90767 0.76769 0.89281 0.89201 0.92097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.89 37.16 0.37 -0.80 16 2 C -0.05 -0.46 5.92 -27.88 -0.17 -0.62 16 3 C 0.09 0.87 6.41 -82.46 -0.53 0.34 16 4 N -0.49 -4.71 11.26 -10.88 -0.12 -4.83 16 5 C 0.21 1.41 13.21 52.25 0.69 2.10 16 6 O -0.19 -1.58 10.57 4.42 0.05 -1.54 16 7 C -0.12 -1.16 7.18 -36.84 -0.26 -1.43 16 8 C 0.61 6.02 7.75 -12.84 -0.10 5.92 16 9 O -0.51 -5.93 14.46 5.20 0.08 -5.85 16 10 N -0.71 -5.78 4.51 -55.10 -0.25 -6.03 16 11 C 0.13 1.05 2.73 -67.93 -0.19 0.86 16 12 H 0.10 0.88 7.58 -51.93 -0.39 0.49 16 13 C -0.16 -1.10 9.48 37.16 0.35 -0.75 16 14 C 0.11 1.11 5.23 -4.04 -0.02 1.09 16 15 N -0.74 -9.08 5.39 -60.30 -0.32 -9.40 16 16 C 0.53 9.45 7.85 -10.99 -0.09 9.36 16 17 O -0.51 -11.16 15.86 5.56 0.09 -11.07 16 18 C -0.15 -3.03 6.16 36.00 0.22 -2.81 16 19 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 20 C -0.54 -15.15 9.50 30.94 0.29 -14.86 16 21 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 22 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 23 N -0.87 -25.95 13.22 55.49 0.73 -25.22 16 24 Si 0.92 21.24 29.55 -169.99 -5.02 16.22 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 27 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.10 0.92 6.47 -51.93 -0.34 0.58 16 33 H 0.26 0.41 8.06 -52.49 -0.42 -0.01 16 34 H 0.41 3.02 8.40 -40.82 -0.34 2.68 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.40 4.15 8.14 -40.82 -0.33 3.81 16 41 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 42 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 43 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 387.85 15.07 5.84 5.84 Total: -1.00 -36.18 387.85 -6.69 -42.87 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -6.02 Total: 2.38 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: 0.48 Total: 0.40 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: 0.04 Total: -45.48 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: 0.21 Total: -18.46 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.18 -6.69 -42.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284201645.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.876 kcal (2) G-P(sol) polarization free energy of solvation -36.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds