Wall clock time and date at job start Sat Apr 11 2020 06:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47434 * 2 1 4 4 H 1.08999 * 109.46888 * 55.00148 * 3 2 1 5 5 C 1.53003 * 109.47014 * 174.99394 * 3 2 1 6 6 N 1.46499 * 109.46708 * 174.99880 * 5 3 2 7 7 C 1.34784 * 119.99893 * 180.02562 * 6 5 3 8 8 O 1.21283 * 119.99649 * 0.02562 * 7 6 5 9 9 C 1.50697 * 119.99774 * 179.72962 * 7 6 5 10 10 S 1.81008 * 109.46759 * 180.02562 * 9 7 6 11 11 C 1.76198 * 99.99946 * 179.97438 * 10 9 7 12 12 H 1.08000 * 119.99996 * 359.97438 * 11 10 9 13 13 C 1.38798 * 120.00252 * 179.97438 * 11 10 9 14 14 N 1.31626 * 120.00327 * 180.02562 * 13 11 10 15 15 Si 1.86795 * 119.99735 * 0.02562 * 13 11 10 16 16 H 1.48503 * 109.47351 * 90.00094 * 15 13 11 17 17 H 1.48496 * 109.47299 * 210.00069 * 15 13 11 18 18 H 1.48507 * 109.47281 * 330.00181 * 15 13 11 19 19 N 1.46491 * 109.46969 * 294.99999 * 3 2 1 20 20 C 1.34776 * 120.00153 * 84.99920 * 19 3 2 21 21 O 1.21576 * 120.00121 * 359.97438 * 20 19 3 22 22 C 1.47516 * 119.99803 * 179.97438 * 20 19 3 23 23 C 1.36828 * 126.94266 * 180.02562 * 22 20 19 24 24 C 1.41265 * 103.84657 * 179.97438 * 23 22 20 25 25 C 1.50696 * 126.70533 * 180.02562 * 24 23 22 26 26 N 1.30128 * 106.58962 * 359.97438 * 24 23 22 27 27 O 1.20889 * 111.98377 * 359.72238 * 26 24 23 28 28 H 1.08997 * 109.47100 * 300.00763 * 1 2 3 29 29 H 1.09002 * 109.46547 * 59.99936 * 1 2 3 30 30 H 1.08996 * 109.47151 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47597 * 239.99813 * 2 1 3 32 32 H 1.09005 * 109.47041 * 119.99967 * 2 1 3 33 33 H 1.08998 * 109.46692 * 55.00382 * 5 3 2 34 34 H 1.08994 * 109.47584 * 295.00246 * 5 3 2 35 35 H 0.97005 * 120.00261 * 0.02562 * 6 5 3 36 36 H 1.09001 * 109.46809 * 299.99238 * 9 7 6 37 37 H 1.08993 * 109.47525 * 59.99679 * 9 7 6 38 38 H 0.97000 * 120.00223 * 180.02562 * 14 13 11 39 39 H 0.97006 * 119.99804 * 264.99213 * 19 3 2 40 40 H 1.07998 * 128.07495 * 359.97438 * 23 22 20 41 41 H 1.08992 * 109.47384 * 89.99933 * 25 24 23 42 42 H 1.08997 * 109.47436 * 210.00155 * 25 24 23 43 43 H 1.09005 * 109.47071 * 330.00090 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4442 0.1259 6 7 4.0631 2.8166 0.0061 7 6 5.3859 3.0628 0.0860 8 8 6.1636 2.1479 0.2567 9 6 5.8989 4.4738 -0.0433 10 16 7.7028 4.4759 0.1056 11 6 8.0230 6.1988 -0.0784 12 1 7.2046 6.8869 -0.2306 13 6 9.3270 6.6717 -0.0278 14 7 9.5661 7.9587 -0.1647 15 14 10.7425 5.4814 0.2347 16 1 11.2326 4.9972 -1.0808 17 1 11.8449 6.1733 0.9495 18 1 10.2752 4.3273 1.0442 19 7 1.6525 2.0974 -1.2517 20 6 0.4353 2.6644 -1.3669 21 8 -0.3414 2.6319 -0.4322 22 6 0.0453 3.3243 -2.6273 23 6 -1.1455 3.9414 -2.8982 24 6 -0.9955 4.3971 -4.2269 25 6 -2.0142 5.1532 -5.0403 26 7 0.1946 4.0373 -4.6110 27 8 0.7918 3.4472 -3.7411 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.9954 0.8310 -0.6657 34 1 3.8499 1.0376 1.0961 35 1 3.4411 3.5483 -0.1308 36 1 5.6145 4.8760 -1.0157 37 1 5.4681 5.0908 0.7452 38 1 10.4774 8.2891 -0.1297 39 1 2.2721 2.1231 -1.9977 40 1 -2.0004 4.0539 -2.2481 41 1 -1.8781 6.2239 -4.8886 42 1 -1.8844 4.9164 -6.0963 43 1 -3.0171 4.8661 -4.7242 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001285038864.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:35 Heat of formation + Delta-G solvation = -19.362679 kcal Electronic energy + Delta-G solvation = -26618.186774 eV Core-core repulsion = 22600.045658 eV Total energy + Delta-G solvation = -4018.141116 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -45.43468 -40.62233 -39.26810 -36.95757 -35.34179 -33.99872 -33.29360 -32.45156 -32.01521 -30.25670 -29.16767 -28.10869 -25.63734 -24.79885 -23.55156 -23.32356 -21.40712 -20.70168 -20.42815 -18.83768 -18.22985 -17.91341 -17.11164 -16.68127 -16.45483 -15.97751 -15.75243 -15.31592 -14.98444 -14.85193 -14.34374 -13.94874 -13.84858 -13.81740 -13.67531 -13.58763 -13.54338 -13.23949 -13.10909 -12.80849 -12.55648 -12.00442 -11.92261 -11.82779 -11.53903 -11.27832 -11.24996 -11.02016 -10.74111 -10.62939 -10.55324 -10.16012 -9.88054 -9.68820 -9.55019 -9.12625 -9.00880 -8.52583 -6.93793 -6.30027 -4.02141 0.35533 1.60182 2.11790 2.50902 2.66514 2.75950 2.90243 3.25418 3.32471 3.49153 3.60858 3.61626 3.98062 4.19734 4.31826 4.45850 4.55949 4.57372 4.68540 4.72222 4.85900 5.00462 5.00861 5.08948 5.10098 5.14376 5.21660 5.24922 5.36791 5.42578 5.57228 5.60431 5.64205 5.70738 5.73068 5.91825 5.98386 6.06445 6.37900 6.79296 7.45366 7.48176 7.67561 7.92987 8.39450 8.40798 9.15995 10.79250 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011621 B = 0.002505 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.833042 B =11176.080226 C =13124.658079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.134 3.866 4 H 0.102 0.898 5 C 0.113 3.887 6 N -0.739 5.739 7 C 0.532 3.468 8 O -0.517 6.517 9 C -0.125 4.125 10 S -0.140 6.140 11 C -0.522 4.522 12 H 0.088 0.912 13 C 0.095 3.905 14 N -0.880 5.880 15 Si 0.857 3.143 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.235 1.235 19 N -0.710 5.710 20 C 0.609 3.391 21 O -0.504 6.504 22 C -0.088 4.088 23 C -0.148 4.148 24 C 0.009 3.991 25 C -0.077 4.077 26 N -0.341 5.341 27 O 0.121 5.879 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.400 0.600 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.271 0.729 39 H 0.411 0.589 40 H 0.184 0.816 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.908 -12.489 -5.059 29.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.172 4.172 3 C 0.030 3.970 4 H 0.120 0.880 5 C -0.012 4.012 6 N -0.394 5.394 7 C 0.318 3.682 8 O -0.391 6.391 9 C -0.276 4.276 10 S 0.086 5.914 11 C -0.669 4.669 12 H 0.106 0.894 13 C -0.113 4.113 14 N -0.517 5.517 15 Si 0.682 3.318 16 H -0.192 1.192 17 H -0.199 1.199 18 H -0.159 1.159 19 N -0.363 5.363 20 C 0.392 3.608 21 O -0.379 6.379 22 C -0.154 4.154 23 C -0.170 4.170 24 C -0.149 4.149 25 C -0.135 4.135 26 N -0.041 5.041 27 O 0.046 5.954 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.105 0.895 35 H 0.234 0.766 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.081 0.919 39 H 0.247 0.753 40 H 0.201 0.799 41 H 0.103 0.897 42 H 0.098 0.902 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -24.350 -13.746 -5.215 28.445 hybrid contribution -0.731 1.290 -0.045 1.483 sum -25.082 -12.457 -5.260 28.494 Atomic orbital electron populations 1.21808 0.94539 1.01058 1.02910 1.21912 0.97230 0.94725 1.03330 1.21487 0.94072 0.94623 0.86829 0.87967 1.21620 0.91058 0.84729 1.03788 1.45960 1.07826 1.08933 1.76705 1.20290 0.81440 0.91051 0.75390 1.90711 1.55449 1.46079 1.46861 1.23282 1.03092 0.95413 1.05784 1.84777 0.97987 1.13101 1.95559 1.22310 0.97246 0.89955 1.57410 0.89395 1.24718 0.98287 0.95050 0.93282 1.69936 1.21442 1.12609 1.47690 0.86731 0.82397 0.82473 0.80218 1.19198 1.19936 1.15912 1.46003 1.15958 1.56642 1.17680 1.16445 0.82442 0.77961 0.83925 1.90902 1.51229 1.58624 1.37112 1.24218 0.93605 1.06525 0.91028 1.22879 0.98997 0.99130 0.96032 1.23702 0.94341 1.02421 0.94427 1.20227 0.95044 0.99260 0.98948 1.73782 1.08246 1.10055 1.12038 1.85009 1.38133 1.55265 1.16947 0.91896 0.92784 0.93118 0.91132 0.90122 0.90580 0.89537 0.76560 0.88454 0.88443 0.91919 0.75307 0.79890 0.89681 0.90170 0.89656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 8.51 37.16 0.32 -0.77 16 2 C -0.13 -0.84 5.61 -26.73 -0.15 -0.99 16 3 C 0.13 0.95 2.41 -67.93 -0.16 0.78 16 4 H 0.10 0.81 7.58 -51.93 -0.39 0.41 16 5 C 0.11 1.00 5.23 -4.04 -0.02 0.98 16 6 N -0.74 -8.30 5.39 -60.30 -0.32 -8.62 16 7 C 0.53 8.83 7.85 -10.98 -0.09 8.75 16 8 O -0.52 -10.51 15.86 5.56 0.09 -10.43 16 9 C -0.13 -2.34 6.16 36.00 0.22 -2.12 16 10 S -0.14 -3.51 18.55 -107.50 -1.99 -5.50 16 11 C -0.52 -14.94 10.04 30.94 0.31 -14.63 16 12 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 13 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 14 N -0.88 -26.54 13.97 55.49 0.78 -25.77 16 15 Si 0.86 21.67 27.74 -169.99 -4.71 16.96 16 16 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.24 -5.92 6.74 56.52 0.38 -5.54 16 19 N -0.71 -5.01 4.47 -54.86 -0.25 -5.25 16 20 C 0.61 5.26 6.39 -12.48 -0.08 5.18 16 21 O -0.50 -5.39 14.05 5.30 0.07 -5.31 16 22 C -0.09 -0.76 7.29 -36.31 -0.26 -1.03 16 23 C -0.15 -1.16 10.92 -38.94 -0.43 -1.58 16 24 C 0.01 0.07 7.31 -82.17 -0.60 -0.53 16 25 C -0.08 -0.38 10.47 36.00 0.38 0.00 16 26 N -0.34 -3.55 12.04 33.52 0.40 -3.15 16 27 O 0.12 1.16 11.04 15.54 0.17 1.33 16 28 H 0.06 0.53 7.84 -51.93 -0.41 0.12 16 29 H 0.05 0.46 5.64 -51.93 -0.29 0.17 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.40 3.75 8.14 -40.82 -0.33 3.42 16 36 H 0.10 1.70 8.14 -51.91 -0.42 1.28 16 37 H 0.10 1.71 8.14 -51.92 -0.42 1.29 16 38 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 39 H 0.41 2.57 8.43 -40.82 -0.34 2.22 16 40 H 0.18 1.07 8.06 -52.49 -0.42 0.65 16 41 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 LS Contribution 381.19 15.07 5.74 5.74 Total: -1.00 -35.36 381.19 -6.68 -42.04 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -6.00 Total: 1.24 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: -0.66 Total: -3.28 kcal Atomic # 7 Polarization: -43.40 SS G_CDS: 0.61 Total: -42.79 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: 0.33 Total: -14.40 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.71 Total: 16.96 kcal Atomic # 16 Polarization: -3.51 SS G_CDS: -1.99 Total: -5.50 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.36 -6.68 -42.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285038864.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.674 kcal (2) G-P(sol) polarization free energy of solvation -35.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds