Wall clock time and date at job start Sat Apr 11 2020 06:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50709 * 109.46843 * 2 1 4 4 N 1.29935 * 125.37735 * 90.34376 * 3 2 1 5 5 C 1.36064 * 108.47525 * 180.16116 * 4 3 2 6 6 C 1.47421 * 126.45024 * 179.82175 * 5 4 3 7 7 O 1.21610 * 120.00409 * 179.69273 * 6 5 4 8 8 N 1.34785 * 119.99993 * 359.69803 * 6 5 4 9 9 C 1.46495 * 120.00259 * 179.97438 * 8 6 5 10 10 C 1.52995 * 109.47115 * 179.97438 * 9 8 6 11 11 H 1.09007 * 109.47080 * 294.99685 * 10 9 8 12 12 C 1.53000 * 109.47023 * 175.00361 * 10 9 8 13 13 N 1.46499 * 109.47455 * 55.00282 * 10 9 8 14 14 C 1.34777 * 120.00199 * 205.00257 * 13 10 9 15 15 O 1.21283 * 119.99750 * 359.97438 * 14 13 10 16 16 C 1.50702 * 119.99928 * 180.27479 * 14 13 10 17 17 S 1.80999 * 109.46903 * 179.72354 * 16 14 13 18 18 C 1.76200 * 99.99730 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00351 * 0.02562 * 18 17 16 20 20 C 1.38796 * 120.00095 * 179.97438 * 18 17 16 21 21 N 1.31634 * 119.99941 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00384 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47035 * 59.99524 * 22 20 18 24 24 H 1.48499 * 109.47381 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46580 * 299.99884 * 22 20 18 26 26 C 1.36088 * 107.10350 * 359.56883 * 5 4 3 27 27 O 1.34047 * 125.37990 * 270.02285 * 3 2 1 28 28 H 1.08996 * 109.47167 * 60.00023 * 1 2 3 29 29 H 1.08999 * 109.47258 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47211 * 300.00059 * 1 2 3 31 31 H 1.08997 * 109.47211 * 239.99941 * 2 1 3 32 32 H 1.09002 * 109.46955 * 119.99297 * 2 1 3 33 33 H 0.97004 * 119.99263 * 359.97438 * 8 6 5 34 34 H 1.08999 * 109.47015 * 59.99811 * 9 8 6 35 35 H 1.09000 * 109.47061 * 300.00498 * 9 8 6 36 36 H 1.08998 * 109.47598 * 59.99967 * 12 10 9 37 37 H 1.09005 * 109.47473 * 179.97438 * 12 10 9 38 38 H 1.08998 * 109.46925 * 299.99562 * 12 10 9 39 39 H 0.97000 * 119.99484 * 24.99354 * 13 10 9 40 40 H 1.09004 * 109.46965 * 299.72211 * 16 14 13 41 41 H 1.08994 * 109.46990 * 59.72065 * 16 14 13 42 42 H 0.97002 * 120.00288 * 179.97438 * 21 20 18 43 43 H 1.08000 * 126.52876 * 180.28027 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2890 2.1281 1.0594 5 6 2.7173 3.3575 0.6639 6 6 3.1118 4.4725 1.5438 7 8 3.4837 5.5253 1.0619 8 7 3.0603 4.3252 2.8826 9 6 3.4528 5.4330 3.7571 10 6 3.3021 5.0070 5.2188 11 1 2.2497 4.8258 5.4378 12 6 3.8287 6.1171 6.1305 13 7 4.0677 3.7798 5.4513 14 6 3.7183 2.9468 6.4515 15 8 2.7702 3.2133 7.1593 16 6 4.5097 1.6875 6.6945 17 16 3.8032 0.7929 8.1003 18 6 4.8893 -0.5934 8.1578 19 1 5.6948 -0.6783 7.4434 20 6 4.7104 -1.5757 9.1219 21 7 3.7295 -1.4715 9.9936 22 14 5.8622 -3.0451 9.1833 23 1 7.2532 -2.5746 9.4043 24 1 5.4602 -3.9431 10.2955 25 1 5.7885 -3.7858 7.8983 26 6 2.7183 3.3622 -0.6970 27 8 2.2906 2.1528 -1.0929 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 2.7633 3.4856 3.2670 34 1 2.8134 6.2939 3.5621 35 1 4.4913 5.7001 3.5613 36 1 3.2591 7.0302 5.9576 37 1 3.7210 5.8139 7.1719 38 1 4.8810 6.2984 5.9115 39 1 4.8261 3.5669 4.8853 40 1 4.4712 1.0571 5.8061 41 1 5.5460 1.9460 6.9120 42 1 3.6042 -2.1582 10.6671 43 1 3.0084 4.1826 -1.3368 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001295469437.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:13 Heat of formation + Delta-G solvation = -64.025724 kcal Electronic energy + Delta-G solvation = -26416.137973 eV Core-core repulsion = 22396.060122 eV Total energy + Delta-G solvation = -4020.077851 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.79415 -40.04811 -39.18019 -36.39362 -35.39665 -34.32342 -33.74765 -32.43382 -31.46688 -29.91053 -28.59860 -27.01825 -25.48893 -24.80448 -23.94177 -21.88695 -21.49311 -20.64015 -20.35817 -18.57103 -17.83345 -17.20884 -16.87283 -16.58694 -16.53576 -15.85993 -15.22548 -15.14503 -14.89361 -14.88047 -14.80682 -14.19370 -14.10691 -13.78953 -13.32769 -13.15731 -13.09690 -12.93976 -12.80415 -12.56770 -12.19713 -12.06299 -11.84383 -11.65620 -11.55584 -11.19121 -11.13514 -11.05013 -11.04359 -10.77253 -10.53059 -9.83203 -9.54049 -9.42143 -9.25354 -9.07641 -8.99610 -8.24921 -6.50456 -6.22147 -3.92692 0.75100 1.65255 2.19266 2.75239 2.98083 3.02040 3.06461 3.22882 3.26845 3.30068 3.48108 3.68838 4.19980 4.35724 4.38191 4.43902 4.68978 4.70367 4.89885 4.91425 5.09006 5.12923 5.15334 5.21710 5.22710 5.33301 5.38997 5.42703 5.52170 5.54464 5.65157 5.66316 5.80508 5.87748 5.92929 6.01241 6.13719 6.18064 6.57576 7.01271 7.30062 7.58690 7.64773 7.83880 8.34467 8.56895 9.23128 10.85191 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.008762 B = 0.002817 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3194.724004 B = 9937.049586 C =12378.792367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.030 4.030 3 C 0.204 3.796 4 N -0.457 5.457 5 C -0.074 4.074 6 C 0.604 3.396 7 O -0.540 6.540 8 N -0.710 5.710 9 C 0.112 3.888 10 C 0.132 3.868 11 H 0.096 0.904 12 C -0.161 4.161 13 N -0.737 5.737 14 C 0.535 3.465 15 O -0.514 6.514 16 C -0.154 4.154 17 S -0.058 6.058 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.918 3.082 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C 0.011 3.989 27 O -0.196 6.196 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.096 0.904 32 H 0.112 0.888 33 H 0.415 0.585 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.059 0.941 39 H 0.399 0.601 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.269 0.731 43 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.454 9.365 -22.776 24.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.068 4.068 3 C -0.005 4.005 4 N -0.187 5.187 5 C -0.194 4.194 6 C 0.390 3.610 7 O -0.417 6.417 8 N -0.362 5.362 9 C -0.012 4.012 10 C 0.026 3.974 11 H 0.114 0.886 12 C -0.219 4.219 13 N -0.393 5.393 14 C 0.321 3.679 15 O -0.388 6.388 16 C -0.305 4.305 17 S 0.168 5.832 18 C -0.685 4.685 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.503 5.503 22 Si 0.744 3.256 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 C -0.063 4.063 27 O -0.082 6.082 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.114 0.886 32 H 0.131 0.869 33 H 0.252 0.748 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.233 0.767 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.079 0.921 43 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -3.949 10.271 -21.125 23.819 hybrid contribution 2.259 -1.385 -1.537 3.063 sum -1.691 8.886 -22.662 24.401 Atomic orbital electron populations 1.21797 0.92748 1.03397 1.03012 1.20194 0.97139 0.83672 1.05784 1.26452 0.98967 0.96984 0.78087 1.70820 1.15575 1.02387 1.29911 1.21751 1.10208 0.94398 0.93021 1.16719 0.77386 0.85088 0.81826 1.90826 1.48150 1.27267 1.75503 1.45804 1.66883 1.18209 1.05278 1.21790 1.01753 0.89671 0.87958 1.21137 0.98213 0.85463 0.92550 0.88598 1.22113 1.01342 0.97593 1.00902 1.46140 1.34731 1.22931 1.35448 1.20322 0.84331 0.84027 0.79241 1.90707 1.28091 1.74438 1.45578 1.23539 1.02969 0.97159 1.06808 1.85377 1.41912 1.22710 1.33163 1.22829 1.17418 1.08310 1.19901 0.91007 1.24982 0.95844 0.98085 0.94601 1.70007 1.29342 1.34393 1.16568 0.86235 0.80419 0.81023 0.77892 1.19949 1.20809 1.19935 1.25266 0.98733 0.86664 0.95622 1.84403 1.63260 1.22479 1.38048 0.92235 0.90539 0.91475 0.88600 0.86948 0.74825 0.89675 0.90459 0.91481 0.90966 0.92162 0.76739 0.89203 0.89255 0.92128 0.75341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.89 37.16 0.37 -0.50 16 2 C -0.03 -0.19 6.56 -27.88 -0.18 -0.37 16 3 C 0.20 1.93 7.56 -13.08 -0.10 1.83 16 4 N -0.46 -5.29 11.06 -7.65 -0.08 -5.38 16 5 C -0.07 -0.83 6.99 -83.02 -0.58 -1.41 16 6 C 0.60 7.29 7.81 -12.52 -0.10 7.19 16 7 O -0.54 -7.50 16.89 5.27 0.09 -7.41 16 8 N -0.71 -7.70 5.38 -61.39 -0.33 -8.04 16 9 C 0.11 1.07 5.23 -4.05 -0.02 1.04 16 10 C 0.13 1.44 2.73 -67.93 -0.19 1.25 16 11 H 0.10 1.21 7.58 -51.93 -0.39 0.82 16 12 C -0.16 -1.62 9.48 37.16 0.35 -1.27 16 13 N -0.74 -9.26 4.52 -53.81 -0.24 -9.51 16 14 C 0.53 9.50 7.81 -10.98 -0.09 9.41 16 15 O -0.51 -11.13 15.53 5.55 0.09 -11.04 16 16 C -0.15 -3.04 6.16 36.01 0.22 -2.82 16 17 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 18 C -0.54 -15.15 9.50 30.94 0.29 -14.85 16 19 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -25.98 13.22 55.49 0.73 -25.25 16 22 Si 0.92 21.23 29.55 -169.99 -5.02 16.21 16 23 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 26 C 0.01 0.10 11.95 29.96 0.36 0.46 16 27 O -0.20 -1.76 10.73 6.53 0.07 -1.69 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.41 4.75 7.87 -40.82 -0.32 4.43 16 34 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.40 4.17 8.60 -40.82 -0.35 3.82 16 40 H 0.09 1.65 8.14 -51.91 -0.42 1.22 16 41 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 42 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 43 H 0.23 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 391.87 15.07 5.91 5.91 Total: -1.00 -36.16 391.87 -6.87 -43.03 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -6.11 Total: 4.94 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: 0.24 Total: 1.98 kcal Atomic # 7 Polarization: -48.24 SS G_CDS: 0.08 Total: -48.16 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: 0.25 Total: -20.14 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.16 -6.87 -43.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001295469437.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.994 kcal (2) G-P(sol) polarization free energy of solvation -36.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds