Wall clock time and date at job start Sat Apr 11 2020 06:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50709 * 109.46843 * 2 1 4 4 N 1.29935 * 125.37735 * 90.34376 * 3 2 1 5 5 C 1.36064 * 108.47525 * 180.16116 * 4 3 2 6 6 C 1.47421 * 126.45024 * 179.82175 * 5 4 3 7 7 O 1.21610 * 120.00409 * 179.69273 * 6 5 4 8 8 N 1.34785 * 119.99993 * 359.69803 * 6 5 4 9 9 C 1.46495 * 120.00259 * 179.97438 * 8 6 5 10 10 C 1.52995 * 109.47115 * 179.97438 * 9 8 6 11 11 H 1.09007 * 109.47080 * 294.99685 * 10 9 8 12 12 C 1.53000 * 109.47023 * 175.00361 * 10 9 8 13 13 N 1.46499 * 109.47455 * 55.00282 * 10 9 8 14 14 C 1.34777 * 120.00199 * 205.00257 * 13 10 9 15 15 O 1.21283 * 119.99750 * 359.97438 * 14 13 10 16 16 C 1.50702 * 119.99928 * 180.27479 * 14 13 10 17 17 S 1.80999 * 109.46903 * 179.72354 * 16 14 13 18 18 C 1.76200 * 99.99730 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00351 * 0.02562 * 18 17 16 20 20 C 1.38796 * 120.00095 * 179.97438 * 18 17 16 21 21 N 1.31634 * 119.99941 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00384 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47035 * 59.99524 * 22 20 18 24 24 H 1.48499 * 109.47381 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46580 * 299.99884 * 22 20 18 26 26 C 1.36088 * 107.10350 * 359.56883 * 5 4 3 27 27 O 1.34047 * 125.37990 * 270.02285 * 3 2 1 28 28 H 1.08996 * 109.47167 * 60.00023 * 1 2 3 29 29 H 1.08999 * 109.47258 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47211 * 300.00059 * 1 2 3 31 31 H 1.08997 * 109.47211 * 239.99941 * 2 1 3 32 32 H 1.09002 * 109.46955 * 119.99297 * 2 1 3 33 33 H 0.97004 * 119.99263 * 359.97438 * 8 6 5 34 34 H 1.08999 * 109.47015 * 59.99811 * 9 8 6 35 35 H 1.09000 * 109.47061 * 300.00498 * 9 8 6 36 36 H 1.08998 * 109.47598 * 59.99967 * 12 10 9 37 37 H 1.09005 * 109.47473 * 179.97438 * 12 10 9 38 38 H 1.08998 * 109.46925 * 299.99562 * 12 10 9 39 39 H 0.97000 * 119.99484 * 24.99354 * 13 10 9 40 40 H 1.09004 * 109.46965 * 299.72211 * 16 14 13 41 41 H 1.08994 * 109.46990 * 59.72065 * 16 14 13 42 42 H 0.97002 * 120.00288 * 179.97438 * 21 20 18 43 43 H 1.08000 * 126.52876 * 180.28027 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2890 2.1281 1.0594 5 6 2.7173 3.3575 0.6639 6 6 3.1118 4.4725 1.5438 7 8 3.4837 5.5253 1.0619 8 7 3.0603 4.3252 2.8826 9 6 3.4528 5.4330 3.7571 10 6 3.3021 5.0070 5.2188 11 1 2.2497 4.8258 5.4378 12 6 3.8287 6.1171 6.1305 13 7 4.0677 3.7798 5.4513 14 6 3.7183 2.9468 6.4515 15 8 2.7702 3.2133 7.1593 16 6 4.5097 1.6875 6.6945 17 16 3.8032 0.7929 8.1003 18 6 4.8893 -0.5934 8.1578 19 1 5.6948 -0.6783 7.4434 20 6 4.7104 -1.5757 9.1219 21 7 3.7295 -1.4715 9.9936 22 14 5.8622 -3.0451 9.1833 23 1 7.2532 -2.5746 9.4043 24 1 5.4602 -3.9431 10.2955 25 1 5.7885 -3.7858 7.8983 26 6 2.7183 3.3622 -0.6970 27 8 2.2906 2.1528 -1.0929 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 2.7633 3.4856 3.2670 34 1 2.8134 6.2939 3.5621 35 1 4.4913 5.7001 3.5613 36 1 3.2591 7.0302 5.9576 37 1 3.7210 5.8139 7.1719 38 1 4.8810 6.2984 5.9115 39 1 4.8261 3.5669 4.8853 40 1 4.4712 1.0571 5.8061 41 1 5.5460 1.9460 6.9120 42 1 3.6042 -2.1582 10.6671 43 1 3.0084 4.1826 -1.3368 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001295469437.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:13 Heat of formation + Delta-G solvation = -93.183614 kcal Electronic energy + Delta-G solvation = -26417.402354 eV Core-core repulsion = 22396.060122 eV Total energy + Delta-G solvation = -4021.342232 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.51342 -41.11274 -40.38186 -37.50817 -36.12503 -34.97002 -34.72753 -34.57086 -32.66974 -30.61816 -30.02736 -27.83738 -27.64554 -25.39343 -24.71599 -22.91300 -22.23346 -21.65000 -21.42942 -19.89945 -19.27990 -18.02029 -17.89595 -17.72382 -17.44934 -16.91170 -16.86227 -16.38078 -16.27113 -15.83575 -15.74731 -15.49723 -14.97684 -14.78463 -14.58808 -14.46299 -14.06410 -13.97662 -13.69598 -13.60828 -13.28518 -13.15864 -12.98299 -12.86085 -12.65825 -12.60045 -12.38811 -12.09537 -12.06677 -11.92701 -11.73193 -11.45157 -11.12122 -10.95595 -10.36148 -10.27046 -10.20888 -10.01877 -8.64967 -8.33668 -6.11371 0.01683 0.88053 1.27073 1.44236 1.46837 1.52968 1.56733 1.60669 1.94413 2.13840 2.25435 2.29728 2.79975 3.00375 3.32491 3.50447 3.64077 3.73496 3.96815 4.02910 4.18673 4.22466 4.23148 4.32230 4.35485 4.51170 4.54565 4.55665 4.60645 4.67890 4.74219 4.96702 4.98413 5.01391 5.02949 5.15420 5.31315 5.32438 5.42341 5.45501 6.17476 6.20366 6.44945 6.49978 6.94296 7.07637 7.22084 8.75197 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.008762 B = 0.002817 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3194.724004 B = 9937.049586 C =12378.792367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.030 4.030 3 C 0.203 3.797 4 N -0.487 5.487 5 C -0.106 4.106 6 C 0.605 3.395 7 O -0.562 6.562 8 N -0.709 5.709 9 C 0.120 3.880 10 C 0.136 3.864 11 H 0.078 0.922 12 C -0.156 4.156 13 N -0.712 5.712 14 C 0.539 3.461 15 O -0.558 6.558 16 C -0.131 4.131 17 S -0.145 6.145 18 C -0.548 4.548 19 H 0.081 0.919 20 C 0.015 3.985 21 N -0.911 5.911 22 Si 0.996 3.004 23 H -0.263 1.263 24 H -0.279 1.279 25 H -0.261 1.261 26 C 0.029 3.971 27 O -0.194 6.194 28 H 0.063 0.937 29 H 0.093 0.907 30 H 0.046 0.954 31 H 0.121 0.879 32 H 0.110 0.890 33 H 0.412 0.588 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.042 0.958 38 H 0.076 0.924 39 H 0.413 0.587 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.271 0.729 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.903 9.204 -25.145 26.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.068 4.068 3 C -0.006 4.006 4 N -0.217 5.217 5 C -0.225 4.225 6 C 0.391 3.609 7 O -0.442 6.442 8 N -0.359 5.359 9 C -0.003 4.003 10 C 0.031 3.969 11 H 0.096 0.904 12 C -0.215 4.215 13 N -0.367 5.367 14 C 0.325 3.675 15 O -0.436 6.436 16 C -0.283 4.283 17 S 0.082 5.918 18 C -0.696 4.696 19 H 0.099 0.901 20 C -0.190 4.190 21 N -0.547 5.547 22 Si 0.818 3.182 23 H -0.188 1.188 24 H -0.204 1.204 25 H -0.186 1.186 26 C -0.045 4.045 27 O -0.079 6.079 28 H 0.082 0.918 29 H 0.111 0.889 30 H 0.066 0.934 31 H 0.140 0.860 32 H 0.129 0.871 33 H 0.248 0.752 34 H 0.114 0.886 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.062 0.938 38 H 0.095 0.905 39 H 0.250 0.750 40 H 0.125 0.875 41 H 0.126 0.874 42 H 0.080 0.920 43 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -2.373 10.138 -23.528 25.729 hybrid contribution 1.748 -1.241 -0.911 2.329 sum -0.625 8.897 -24.439 26.016 Atomic orbital electron populations 1.21777 0.92374 1.04250 1.02209 1.20392 0.97330 0.82110 1.06939 1.27062 0.98063 0.97750 0.77755 1.70784 1.16820 1.02980 1.31154 1.21804 1.12268 0.94480 0.93955 1.16824 0.76953 0.85035 0.82041 1.90805 1.49441 1.28072 1.75841 1.45837 1.66561 1.18291 1.05254 1.21796 1.02789 0.89470 0.86258 1.21217 0.96992 0.84728 0.93967 0.90383 1.22068 1.02800 0.97903 0.98685 1.45876 1.34676 1.22479 1.33626 1.19981 0.83573 0.83984 0.79932 1.90700 1.29974 1.75325 1.47595 1.23380 1.03440 0.97496 1.03935 1.85532 1.44023 1.24462 1.37811 1.23175 1.17549 1.08594 1.20300 0.90059 1.26099 0.97538 1.01418 0.93938 1.70173 1.31429 1.35665 1.17454 0.85033 0.78083 0.76708 0.78367 1.18771 1.20380 1.18596 1.25831 0.96552 0.86911 0.95230 1.84435 1.63116 1.22529 1.37870 0.91835 0.88861 0.93433 0.86039 0.87140 0.75226 0.88553 0.89110 0.89179 0.93834 0.90500 0.75030 0.87468 0.87440 0.91987 0.72496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.89 71.98 0.71 -0.82 16 2 C -0.03 -0.33 6.56 29.85 0.20 -0.14 16 3 C 0.20 3.62 7.56 88.39 0.67 4.29 16 4 N -0.49 -11.05 11.06 -293.03 -3.24 -14.29 16 5 C -0.11 -2.30 6.99 40.41 0.28 -2.01 16 6 C 0.60 13.97 7.81 86.66 0.68 14.65 16 7 O -0.56 -14.83 16.89 -4.06 -0.07 -14.90 16 8 N -0.71 -14.63 5.38 -466.38 -2.51 -17.14 16 9 C 0.12 2.06 5.23 86.38 0.45 2.51 16 10 C 0.14 2.81 2.73 44.99 0.12 2.93 16 11 H 0.08 1.97 7.58 -2.38 -0.02 1.95 16 12 C -0.16 -2.91 9.48 71.98 0.68 -2.22 16 13 N -0.71 -17.03 4.52 -442.53 -2.00 -19.03 16 14 C 0.54 19.12 7.81 87.66 0.68 19.80 16 15 O -0.56 -24.84 15.53 -3.04 -0.05 -24.88 16 16 C -0.13 -5.12 6.16 71.24 0.44 -4.68 16 17 S -0.15 -7.99 20.57 -56.49 -1.16 -9.15 16 18 C -0.55 -31.14 9.50 67.95 0.65 -30.50 16 19 H 0.08 4.29 7.80 -2.91 -0.02 4.26 16 20 C 0.01 0.85 5.49 84.86 0.47 1.31 16 21 N -0.91 -55.66 13.22 21.65 0.29 -55.38 16 22 Si 1.00 43.25 29.55 68.60 2.03 45.27 16 23 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 24 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 25 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 26 C 0.03 0.47 11.95 67.32 0.80 1.27 16 27 O -0.19 -3.16 10.73 0.46 0.00 -3.15 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.41 9.21 7.87 -92.71 -0.73 8.48 16 34 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.04 1.09 8.14 -2.38 -0.02 1.07 16 38 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.41 7.74 8.60 -92.71 -0.80 6.95 16 40 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 41 H 0.11 3.80 8.14 -2.40 -0.02 3.78 16 42 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 43 H 0.26 2.30 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -80.86 391.87 -0.35 -81.22 By element: Atomic # 1 Polarization: 25.53 SS G_CDS: -0.47 Total: 25.05 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: 6.83 Total: 6.39 kcal Atomic # 7 Polarization: -98.38 SS G_CDS: -7.46 Total: -105.85 kcal Atomic # 8 Polarization: -42.83 SS G_CDS: -0.11 Total: -42.94 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Atomic # 16 Polarization: -7.99 SS G_CDS: -1.16 Total: -9.15 kcal Total: -80.86 -0.35 -81.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001295469437.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.968 kcal (2) G-P(sol) polarization free energy of solvation -80.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds