Wall clock time and date at job start Sat Apr 11 2020 06:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50703 * 109.47267 * 2 1 4 4 N 1.29935 * 125.37536 * 89.99863 * 3 2 1 5 5 C 1.36075 * 108.47406 * 180.02562 * 4 3 2 6 6 C 1.47419 * 126.44852 * 179.97438 * 5 4 3 7 7 O 1.21605 * 120.00245 * 180.02562 * 6 5 4 8 8 N 1.34779 * 119.99877 * 0.02562 * 6 5 4 9 9 C 1.46496 * 119.99965 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.47464 * 325.00834 * 9 8 6 11 11 C 1.53006 * 109.46995 * 85.00573 * 9 8 6 12 12 C 1.52999 * 109.47487 * 205.00106 * 9 8 6 13 13 N 1.46504 * 109.46795 * 55.00145 * 12 9 8 14 14 C 1.34774 * 120.00039 * 180.02562 * 13 12 9 15 15 O 1.21287 * 120.00216 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00355 * 179.97438 * 14 13 12 17 17 S 1.80994 * 109.47495 * 179.97438 * 16 14 13 18 18 C 1.76205 * 100.00225 * 180.02562 * 17 16 14 19 19 H 1.07997 * 119.99759 * 0.02562 * 18 17 16 20 20 C 1.38794 * 120.00314 * 180.02562 * 18 17 16 21 21 N 1.31634 * 119.99653 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00362 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47106 * 59.99720 * 22 20 18 24 24 H 1.48499 * 109.47508 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.46956 * 300.00028 * 22 20 18 26 26 C 1.36094 * 107.10436 * 0.22744 * 5 4 3 27 27 O 1.34052 * 125.37993 * 270.04414 * 3 2 1 28 28 H 1.08997 * 109.47195 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47518 * 300.00059 * 1 2 3 30 30 H 1.09005 * 109.47304 * 59.99951 * 1 2 3 31 31 H 1.08999 * 109.47200 * 240.00202 * 2 1 3 32 32 H 1.08996 * 109.47458 * 120.00244 * 2 1 3 33 33 H 0.97003 * 120.00044 * 0.02562 * 8 6 5 34 34 H 1.09001 * 109.47002 * 299.99701 * 11 9 8 35 35 H 1.08993 * 109.46955 * 60.00138 * 11 9 8 36 36 H 1.09000 * 109.47050 * 179.97438 * 11 9 8 37 37 H 1.08997 * 109.47756 * 174.99813 * 12 9 8 38 38 H 1.09001 * 109.47317 * 295.00696 * 12 9 8 39 39 H 0.97002 * 120.00414 * 359.97438 * 13 12 9 40 40 H 1.08999 * 109.47131 * 300.00410 * 16 14 13 41 41 H 1.09005 * 109.46978 * 60.00111 * 16 14 13 42 42 H 0.97005 * 120.00088 * 180.02562 * 21 20 18 43 43 H 1.07998 * 126.52597 * 179.77481 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2830 2.1300 1.0595 5 6 2.7165 3.3577 0.6639 6 6 3.1101 4.4731 1.5438 7 8 3.4814 5.5260 1.0619 8 7 3.0584 4.3258 2.8826 9 6 3.4500 5.4339 3.7570 10 1 4.2700 5.9864 3.2984 11 6 2.2562 6.3690 3.9610 12 6 3.9015 4.8808 5.1102 13 7 4.9655 3.8950 4.9044 14 6 5.5203 3.2713 5.9625 15 8 5.1383 3.5258 7.0852 16 6 6.6144 2.2569 5.7508 17 16 7.1487 1.6026 7.3515 18 6 8.3947 0.4754 6.8209 19 1 8.6131 0.3680 5.7687 20 6 9.0955 -0.2746 7.7551 21 7 8.8296 -0.1434 9.0377 22 14 10.4169 -1.4691 7.1927 23 1 11.4753 -0.7278 6.4609 24 1 11.0120 -2.1418 8.3753 25 1 9.8144 -2.4868 6.2948 26 6 2.7130 3.3641 -0.6971 27 8 2.2902 2.1529 -1.0930 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 2.7625 3.4857 3.2670 34 1 1.9346 6.7631 2.9970 35 1 1.4362 5.8166 4.4197 36 1 2.5475 7.1933 4.6121 37 1 4.2763 5.6959 5.7293 38 1 3.0568 4.4049 5.6084 39 1 5.2703 3.6907 4.0064 40 1 6.2394 1.4420 5.1316 41 1 7.4594 2.7324 5.2527 42 1 9.3196 -0.6672 9.6907 43 1 2.9980 4.1862 -1.3368 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001298759618.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:23 Heat of formation + Delta-G solvation = -93.147228 kcal Electronic energy + Delta-G solvation = -26293.119163 eV Core-core repulsion = 22271.778508 eV Total energy + Delta-G solvation = -4021.340655 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.50238 -41.13354 -40.38049 -37.55131 -36.11131 -34.93903 -34.79127 -34.58260 -32.35586 -30.87540 -30.41168 -27.74653 -26.90038 -25.69877 -25.17067 -22.78088 -21.91499 -21.74151 -21.53361 -19.89835 -19.33525 -17.96135 -17.85148 -17.67340 -17.63858 -16.97847 -16.87757 -16.47335 -16.02186 -15.89620 -15.72597 -15.46079 -15.02821 -14.85779 -14.56817 -14.46662 -14.19932 -13.88185 -13.71430 -13.59839 -13.27834 -13.17588 -13.00815 -12.86873 -12.64515 -12.62367 -12.38533 -12.11961 -12.05873 -11.91979 -11.74794 -11.40622 -11.13308 -11.01988 -10.38213 -10.29546 -10.19533 -10.02694 -8.67010 -8.34877 -6.13042 0.02381 0.89224 1.25518 1.43624 1.45674 1.53510 1.55918 1.57733 1.92614 2.14505 2.24596 2.28266 2.79988 2.99099 3.30771 3.48759 3.66442 3.74153 3.92649 4.02124 4.19634 4.19943 4.24397 4.26808 4.36185 4.48580 4.53544 4.56721 4.63671 4.67675 4.73662 4.90822 4.98373 5.03369 5.03870 5.19853 5.30965 5.33235 5.37421 5.41106 6.19196 6.20077 6.38906 6.51507 6.97226 7.06253 7.17025 8.74091 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009529 B = 0.002518 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2937.547001 B =11115.578316 C =13093.310723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.030 4.030 3 C 0.202 3.798 4 N -0.483 5.483 5 C -0.103 4.103 6 C 0.607 3.393 7 O -0.561 6.561 8 N -0.703 5.703 9 C 0.140 3.860 10 H 0.095 0.905 11 C -0.155 4.155 12 C 0.115 3.885 13 N -0.715 5.715 14 C 0.537 3.463 15 O -0.560 6.560 16 C -0.131 4.131 17 S -0.145 6.145 18 C -0.549 4.549 19 H 0.081 0.919 20 C 0.014 3.986 21 N -0.911 5.911 22 Si 0.998 3.002 23 H -0.263 1.263 24 H -0.278 1.278 25 H -0.261 1.261 26 C 0.026 3.974 27 O -0.195 6.195 28 H 0.093 0.907 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.118 0.882 32 H 0.113 0.887 33 H 0.414 0.586 34 H 0.058 0.942 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.410 0.590 40 H 0.107 0.893 41 H 0.106 0.894 42 H 0.272 0.728 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.708 5.328 -24.258 30.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.068 4.068 3 C -0.007 4.007 4 N -0.213 5.213 5 C -0.222 4.222 6 C 0.394 3.606 7 O -0.440 6.440 8 N -0.355 5.355 9 C 0.036 3.964 10 H 0.113 0.887 11 C -0.214 4.214 12 C -0.009 4.009 13 N -0.369 5.369 14 C 0.323 3.677 15 O -0.437 6.437 16 C -0.283 4.283 17 S 0.082 5.918 18 C -0.697 4.697 19 H 0.099 0.901 20 C -0.191 4.191 21 N -0.547 5.547 22 Si 0.819 3.181 23 H -0.188 1.188 24 H -0.203 1.203 25 H -0.186 1.186 26 C -0.048 4.048 27 O -0.081 6.081 28 H 0.112 0.888 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.136 0.864 32 H 0.131 0.869 33 H 0.250 0.750 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.093 0.907 39 H 0.246 0.754 40 H 0.125 0.875 41 H 0.124 0.876 42 H 0.081 0.919 43 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -18.134 6.262 -21.918 29.128 hybrid contribution 1.347 -0.964 -1.948 2.557 sum -16.788 5.297 -23.866 29.656 Atomic orbital electron populations 1.21773 0.92196 1.04248 1.02275 1.20395 0.97427 0.82035 1.06930 1.27100 0.98047 0.97804 0.77758 1.70759 1.16764 1.02779 1.30954 1.21777 1.12088 0.94558 0.93794 1.16835 0.76704 0.84960 0.82127 1.90815 1.49178 1.28198 1.75829 1.45912 1.66601 1.17906 1.05045 1.21260 0.99049 0.87743 0.88342 0.88726 1.22069 0.97002 0.99490 1.02822 1.21757 0.90283 0.92324 0.96499 1.45742 1.39250 1.42733 1.09162 1.19978 0.82157 0.80992 0.84577 1.90700 1.63154 1.64913 1.24973 1.23374 1.00197 1.00815 1.03886 1.85517 1.47499 1.51687 1.07066 1.23168 1.23185 1.27092 0.96207 0.90089 1.26117 0.99722 0.98769 0.94450 1.70173 1.41719 1.40917 1.01880 0.85014 0.77435 0.77682 0.77936 1.18790 1.20292 1.18594 1.25806 0.96715 0.86909 0.95386 1.84439 1.63285 1.22386 1.38005 0.88843 0.93043 0.92108 0.86411 0.86872 0.74963 0.92262 0.91320 0.89431 0.89445 0.90651 0.75364 0.87469 0.87575 0.91939 0.72830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.89 71.98 0.71 -0.32 16 2 C -0.03 -0.25 6.56 29.85 0.20 -0.06 16 3 C 0.20 3.14 7.56 88.39 0.67 3.81 16 4 N -0.48 -9.53 11.06 -293.02 -3.24 -12.77 16 5 C -0.10 -2.03 6.99 40.41 0.28 -1.75 16 6 C 0.61 12.99 7.78 86.66 0.67 13.66 16 7 O -0.56 -14.33 16.55 -4.05 -0.07 -14.40 16 8 N -0.70 -12.99 4.51 -445.80 -2.01 -15.00 16 9 C 0.14 2.42 2.73 44.99 0.12 2.54 16 10 H 0.09 1.77 7.58 -2.39 -0.02 1.76 16 11 C -0.16 -2.26 9.48 71.98 0.68 -1.57 16 12 C 0.12 2.40 5.23 86.38 0.45 2.85 16 13 N -0.71 -18.11 5.39 -463.05 -2.49 -20.61 16 14 C 0.54 19.66 7.85 87.66 0.69 20.34 16 15 O -0.56 -25.35 15.86 -3.05 -0.05 -25.40 16 16 C -0.13 -5.27 6.16 71.24 0.44 -4.83 16 17 S -0.14 -8.05 20.57 -56.49 -1.16 -9.21 16 18 C -0.55 -31.47 9.50 67.95 0.65 -30.82 16 19 H 0.08 4.32 7.80 -2.91 -0.02 4.30 16 20 C 0.01 0.82 5.49 84.86 0.47 1.28 16 21 N -0.91 -55.95 13.22 21.65 0.29 -55.66 16 22 Si 1.00 43.58 29.55 68.60 2.03 45.61 16 23 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 24 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 25 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 26 C 0.03 0.39 11.95 67.32 0.80 1.20 16 27 O -0.20 -2.93 10.73 0.35 0.00 -2.93 16 28 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 30 H 0.06 0.42 8.14 -2.38 -0.02 0.40 16 31 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.11 0.92 8.14 -2.39 -0.02 0.91 16 33 H 0.41 7.60 8.33 -92.71 -0.77 6.83 16 34 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.41 8.78 8.14 -92.71 -0.75 8.03 16 40 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 41 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 42 H 0.27 15.50 8.31 -92.70 -0.77 14.73 16 43 H 0.26 2.18 8.06 -2.91 -0.02 2.16 16 Total: -1.00 -80.63 391.87 -0.35 -80.98 By element: Atomic # 1 Polarization: 23.53 SS G_CDS: -0.47 Total: 23.05 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: 6.83 Total: 6.34 kcal Atomic # 7 Polarization: -96.58 SS G_CDS: -7.46 Total: -104.04 kcal Atomic # 8 Polarization: -42.62 SS G_CDS: -0.11 Total: -42.73 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 16 Polarization: -8.05 SS G_CDS: -1.16 Total: -9.21 kcal Total: -80.63 -0.35 -80.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001298759618.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.169 kcal (2) G-P(sol) polarization free energy of solvation -80.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds