Wall clock time and date at job start Sat Apr 11 2020 06:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47506 * 2 1 4 4 C 1.53003 * 109.47237 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47152 * 180.02562 * 4 3 2 6 6 C 1.34771 * 120.00140 * 180.02562 * 5 4 3 7 7 O 1.21593 * 119.99754 * 359.97438 * 6 5 4 8 8 N 1.34778 * 120.00459 * 179.97438 * 6 5 4 9 9 N 1.40097 * 119.99290 * 359.97438 * 8 6 5 10 10 S 1.65599 * 119.99808 * 124.72671 * 9 8 6 11 11 O 1.42106 * 106.40430 * 173.53546 * 10 9 8 12 12 O 1.42091 * 106.40386 * 306.45607 * 10 9 8 13 13 C 1.76204 * 107.22013 * 59.99696 * 10 9 8 14 14 C 1.38634 * 119.74624 * 269.73259 * 13 10 9 15 15 C 1.37623 * 120.24307 * 179.71854 * 14 13 10 16 16 C 1.40713 * 119.74838 * 0.57003 * 15 14 13 17 17 C 1.41396 * 120.24849 * 179.68505 * 16 15 14 18 18 H 1.07995 * 119.99843 * 204.40856 * 17 16 15 19 19 C 1.39943 * 119.99669 * 24.39957 * 17 16 15 20 20 N 1.30822 * 120.00103 * 17.85172 * 19 17 16 21 21 Si 1.86803 * 119.99907 * 197.85255 * 19 17 16 22 22 H 1.48497 * 109.47397 * 89.99936 * 21 19 17 23 23 H 1.48495 * 109.47256 * 210.00222 * 21 19 17 24 24 H 1.48503 * 109.46941 * 330.00481 * 21 19 17 25 25 C 1.40718 * 119.50914 * 359.70283 * 16 15 14 26 26 C 1.37620 * 119.74404 * 359.97438 * 25 16 15 27 27 H 1.08999 * 109.47379 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47088 * 299.99928 * 1 2 3 29 29 H 1.09001 * 109.47270 * 59.99329 * 1 2 3 30 30 H 1.09007 * 109.46780 * 240.00213 * 2 1 3 31 31 H 1.09001 * 109.47270 * 120.00671 * 2 1 3 32 32 H 1.09007 * 109.46927 * 60.00303 * 3 2 1 33 33 H 1.09001 * 109.47404 * 300.00589 * 3 2 1 34 34 H 1.08994 * 109.46959 * 60.00485 * 4 3 2 35 35 H 1.08995 * 109.47107 * 300.00224 * 4 3 2 36 36 H 0.97004 * 119.99922 * 359.97438 * 5 4 3 37 37 H 0.96992 * 120.00171 * 179.97438 * 8 6 5 38 38 H 0.96999 * 120.00549 * 304.99801 * 9 8 6 39 39 H 1.07995 * 119.87769 * 359.97438 * 14 13 10 40 40 H 1.07999 * 120.12389 * 180.27342 * 15 14 13 41 41 H 0.97005 * 119.99891 * 179.97438 * 20 19 17 42 42 H 1.08000 * 120.13053 * 179.97438 * 25 16 15 43 43 H 1.08002 * 119.87115 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 7 4.0585 2.8236 0.0000 6 6 5.3835 3.0698 -0.0010 7 8 6.1736 2.1455 -0.0018 8 7 5.8329 4.3404 -0.0009 9 7 4.9225 5.4053 -0.0004 10 16 5.0058 6.5653 1.1784 11 8 4.0661 7.5694 0.8205 12 8 4.9726 5.8775 2.4213 13 6 6.5982 7.3110 1.0648 14 6 7.6551 6.7907 1.7957 15 6 8.9045 7.3615 1.7102 16 6 9.1041 8.4847 0.8863 17 6 10.3817 9.0836 0.7958 18 1 10.4726 10.1215 0.5116 19 6 11.5284 8.3314 1.0746 20 7 11.4694 7.0245 1.0748 21 14 13.1433 9.1935 1.4466 22 1 13.2496 9.4367 2.9077 23 1 14.2741 8.3390 1.0035 24 1 13.1900 10.4902 0.7244 25 6 8.0226 9.0077 0.1535 26 6 6.7835 8.4166 0.2492 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6767 1.9563 -0.8899 34 1 3.9329 0.9287 -0.8909 35 1 3.9337 0.9283 0.8890 36 1 3.4282 3.5609 0.0003 37 1 6.7865 4.5176 -0.0012 38 1 4.2409 5.4610 -0.6883 39 1 7.4984 5.9318 2.4313 40 1 9.7275 6.9519 2.2770 41 1 12.2643 6.5031 1.2678 42 1 8.1644 9.8696 -0.4816 43 1 5.9521 8.8160 -0.3127 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319036729.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:26 Heat of formation + Delta-G solvation = -79.125110 kcal Electronic energy + Delta-G solvation = -27010.262600 eV Core-core repulsion = 22989.529990 eV Total energy + Delta-G solvation = -4020.732610 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.97699 -37.68110 -36.77164 -36.47291 -35.83413 -35.37519 -34.14467 -33.69853 -30.37335 -29.90568 -29.56514 -28.72034 -25.93633 -23.86431 -21.67077 -21.58980 -21.25876 -20.98845 -19.56964 -18.83517 -17.78100 -17.64063 -17.14551 -16.48738 -16.13852 -15.60501 -15.43881 -14.96610 -14.80097 -14.47546 -14.21058 -13.86201 -13.55778 -13.52846 -13.31536 -12.65402 -12.52393 -12.29541 -12.24060 -11.88992 -11.84627 -11.66625 -11.55305 -11.46072 -11.43185 -11.40224 -11.32305 -11.18620 -10.98564 -10.94840 -10.48291 -10.20510 -9.83182 -9.60426 -9.58517 -9.23071 -8.78061 -8.08134 -7.81162 -7.23494 -4.90006 0.78443 2.12381 2.49576 2.82676 2.83664 2.88427 2.88999 3.14487 3.25879 3.60387 4.06160 4.30426 4.40834 4.52479 4.61781 4.75865 5.07617 5.08606 5.21031 5.29372 5.34049 5.46267 5.58294 5.67585 5.75809 5.93485 5.96096 5.96602 6.02365 6.10634 6.39167 6.59641 6.61315 6.78539 6.89141 6.94129 7.01872 7.24186 7.32156 7.53300 7.67834 7.86847 7.97660 8.22351 8.41423 8.54807 8.56584 9.67424 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.019528 B = 0.002503 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.468010 B =11182.975569 C =12194.298989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.135 4.135 4 C 0.135 3.865 5 N -0.742 5.742 6 C 0.717 3.283 7 O -0.580 6.580 8 N -0.509 5.509 9 N -0.923 5.923 10 S 2.687 3.313 11 O -0.968 6.968 12 O -0.967 6.967 13 C -0.791 4.791 14 C -0.019 4.019 15 C -0.180 4.180 16 C 0.138 3.862 17 C -0.427 4.427 18 H 0.090 0.910 19 C 0.070 3.930 20 N -0.759 5.759 21 Si 0.919 3.081 22 H -0.262 1.262 23 H -0.273 1.273 24 H -0.258 1.258 25 C -0.237 4.237 26 C 0.003 3.997 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.397 0.603 37 H 0.437 0.563 38 H 0.412 0.588 39 H 0.105 0.895 40 H 0.124 0.876 41 H 0.291 0.709 42 H 0.101 0.899 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.257 -7.858 -3.457 14.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.173 4.173 4 C 0.010 3.990 5 N -0.399 5.399 6 C 0.416 3.584 7 O -0.455 6.455 8 N -0.269 5.269 9 N -0.773 5.773 10 S 2.786 3.214 11 O -0.958 6.958 12 O -0.956 6.956 13 C -0.889 4.889 14 C -0.039 4.039 15 C -0.200 4.200 16 C 0.134 3.866 17 C -0.454 4.454 18 H 0.108 0.892 19 C -0.153 4.153 20 N -0.381 5.381 21 Si 0.742 3.258 22 H -0.187 1.187 23 H -0.198 1.198 24 H -0.181 1.181 25 C -0.257 4.257 26 C -0.017 4.017 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.232 0.768 37 H 0.283 0.717 38 H 0.248 0.752 39 H 0.123 0.877 40 H 0.142 0.858 41 H 0.103 0.897 42 H 0.119 0.881 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -12.295 -8.719 -2.717 15.316 hybrid contribution 1.234 1.000 -0.579 1.690 sum -11.061 -7.719 -3.296 13.885 Atomic orbital electron populations 1.21767 0.95546 1.01733 1.01947 1.21423 0.96045 0.95840 1.02598 1.21864 0.94234 0.98153 1.03011 1.21270 0.93343 0.81751 1.02587 1.45048 1.05527 1.09210 1.80108 1.15864 0.83080 0.82051 0.77454 1.91005 1.55112 1.40694 1.58706 1.43982 1.04952 0.96719 1.81263 1.56064 1.40061 1.32891 1.48311 1.01774 0.75283 0.71967 0.72338 1.93548 1.62386 1.56073 1.83748 1.93517 1.87669 1.74005 1.40453 1.28893 1.19819 1.16602 1.23584 1.20284 0.92312 0.96792 0.94518 1.21354 0.95631 1.00367 1.02663 1.17889 0.92316 0.89919 0.86469 1.20016 0.90327 0.98561 1.36511 0.89236 1.26180 1.02313 0.94763 0.92051 1.69801 1.32315 1.06499 1.29443 0.86103 0.79101 0.80382 0.80175 1.18702 1.19769 1.18134 1.21051 0.93696 1.04779 1.06208 1.20160 0.96307 0.92143 0.93069 0.92640 0.92610 0.92701 0.91627 0.91533 0.91047 0.91222 0.91452 0.91357 0.76825 0.71684 0.75194 0.87673 0.85840 0.89717 0.88056 0.87642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.16 0.37 -0.52 16 2 C -0.12 -0.78 5.93 -26.74 -0.16 -0.94 16 3 C -0.13 -0.99 5.33 -26.73 -0.14 -1.13 16 4 C 0.13 1.37 5.67 -4.04 -0.02 1.35 16 5 N -0.74 -8.94 5.52 -65.23 -0.36 -9.30 16 6 C 0.72 11.23 8.68 -86.92 -0.75 10.48 16 7 O -0.58 -11.02 17.18 5.28 0.09 -10.93 16 8 N -0.51 -7.65 6.29 27.63 0.17 -7.47 16 9 N -0.92 -12.57 5.86 60.35 0.35 -12.21 16 10 S 2.69 46.94 5.92 -107.50 -0.64 46.31 16 11 O -0.97 -18.12 17.26 -57.17 -0.99 -19.11 16 12 O -0.97 -19.49 17.25 -57.17 -0.99 -20.48 16 13 C -0.79 -16.23 6.00 -39.29 -0.24 -16.46 16 14 C -0.02 -0.41 9.49 -39.66 -0.38 -0.79 16 15 C -0.18 -4.31 8.70 -38.87 -0.34 -4.65 16 16 C 0.14 3.35 5.57 -106.82 -0.60 2.75 16 17 C -0.43 -10.08 9.05 -37.74 -0.34 -10.42 16 18 H 0.09 2.00 7.91 -52.49 -0.42 1.58 16 19 C 0.07 1.56 5.14 -17.34 -0.09 1.47 16 20 N -0.76 -17.46 10.95 55.55 0.61 -16.85 16 21 Si 0.92 16.55 29.60 -169.99 -5.03 11.52 16 22 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 23 H -0.27 -4.82 7.11 56.52 0.40 -4.42 16 24 H -0.26 -4.58 7.11 56.52 0.40 -4.18 16 25 C -0.24 -5.31 9.80 -38.87 -0.38 -5.69 16 26 C 0.00 0.07 9.49 -39.66 -0.38 -0.30 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.41 8.14 -51.92 -0.42 -0.02 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.53 8.14 -51.92 -0.42 0.10 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.40 3.98 7.26 -40.82 -0.30 3.68 16 37 H 0.44 6.83 8.93 -182.61 -1.63 5.19 16 38 H 0.41 4.22 8.57 -176.25 -1.51 2.71 16 39 H 0.11 2.18 7.59 -52.49 -0.40 1.79 16 40 H 0.12 3.02 6.16 -52.49 -0.32 2.70 16 41 H 0.29 6.04 8.30 -40.82 -0.34 5.70 16 42 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 43 H 0.11 1.95 7.60 -52.49 -0.40 1.55 16 LS Contribution 379.57 15.07 5.72 5.72 Total: -1.00 -30.79 379.57 -12.83 -43.62 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: -8.33 Total: 14.04 kcal Atomic # 6 Polarization: -21.40 SS G_CDS: -3.44 Total: -24.84 kcal Atomic # 7 Polarization: -46.62 SS G_CDS: 0.78 Total: -45.84 kcal Atomic # 8 Polarization: -48.64 SS G_CDS: -1.88 Total: -50.52 kcal Atomic # 14 Polarization: 16.55 SS G_CDS: -5.03 Total: 11.52 kcal Atomic # 16 Polarization: 46.94 SS G_CDS: -0.64 Total: 46.31 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.79 -12.83 -43.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319036729.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.506 kcal (2) G-P(sol) polarization free energy of solvation -30.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds