Wall clock time and date at job start Sat Apr 11 2020 06:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29939 * 125.37236 * 2 1 4 4 C 1.36071 * 108.47327 * 180.16885 * 3 2 1 5 5 C 1.47421 * 126.44943 * 179.82545 * 4 3 2 6 6 O 1.21607 * 120.00465 * 185.73541 * 5 4 3 7 7 N 1.34780 * 119.99835 * 5.74088 * 5 4 3 8 8 C 1.46500 * 120.00160 * 5.34353 * 7 5 4 9 9 C 1.46500 * 119.99783 * 185.34729 * 7 5 4 10 10 H 1.08993 * 109.47353 * 359.97438 * 9 7 5 11 11 C 1.53005 * 109.46849 * 119.99951 * 9 7 5 12 12 C 1.52999 * 109.46923 * 239.99526 * 9 7 5 13 13 N 1.46502 * 109.47214 * 55.00031 * 12 9 7 14 14 C 1.34775 * 120.00232 * 179.97438 * 13 12 9 15 15 O 1.21278 * 119.99705 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00026 * 180.02562 * 14 13 12 17 17 S 1.80998 * 109.47074 * 180.02562 * 16 14 13 18 18 C 1.76200 * 99.99964 * 179.97438 * 17 16 14 19 19 H 1.07999 * 120.00120 * 359.97438 * 18 17 16 20 20 C 1.38798 * 119.99721 * 179.97438 * 18 17 16 21 21 N 1.31630 * 120.00554 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99735 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47244 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47044 * 119.99914 * 22 20 18 25 25 H 1.48493 * 109.47696 * 239.99872 * 22 20 18 26 26 C 1.36088 * 107.10279 * 359.56634 * 4 3 2 27 27 O 1.34051 * 125.38261 * 179.68564 * 2 1 3 28 28 H 1.09003 * 109.46880 * 180.34783 * 1 2 3 29 29 H 1.08999 * 109.46985 * 300.33612 * 1 2 3 30 30 H 1.08993 * 109.47333 * 60.34365 * 1 2 3 31 31 H 1.09007 * 109.46879 * 275.31843 * 8 7 5 32 32 H 1.08992 * 109.47546 * 155.31647 * 8 7 5 33 33 H 1.09001 * 109.46846 * 35.31358 * 8 7 5 34 34 H 1.08997 * 109.46967 * 299.99546 * 11 9 7 35 35 H 1.08999 * 109.47626 * 60.00062 * 11 9 7 36 36 H 1.09007 * 109.46994 * 179.97438 * 11 9 7 37 37 H 1.08998 * 109.47186 * 175.00197 * 12 9 7 38 38 H 1.09006 * 109.47232 * 295.00089 * 12 9 7 39 39 H 0.96999 * 119.99676 * 0.02562 * 13 12 9 40 40 H 1.09006 * 109.47127 * 300.00212 * 16 14 13 41 41 H 1.08989 * 109.47057 * 60.00200 * 16 14 13 42 42 H 0.96995 * 120.00473 * 180.02562 * 21 20 18 43 43 H 1.07995 * 126.52651 * 180.28754 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2592 1.0595 0.0000 4 6 3.5612 0.6640 -0.0038 5 6 4.7439 1.5440 -0.0088 6 8 5.8569 1.0663 -0.1171 7 7 4.5916 2.8782 0.1069 8 6 3.2637 3.4452 0.3548 9 6 5.7540 3.7614 -0.0154 10 1 6.6471 3.1635 -0.1966 11 6 5.5404 4.7268 -1.1830 12 6 5.9279 4.5577 1.2795 13 7 6.0129 3.6338 2.4133 14 6 6.1692 4.1133 3.6631 15 8 6.2391 5.3097 3.8492 16 6 6.2572 3.1629 4.8293 17 16 6.4628 4.1049 6.3611 18 6 6.5346 2.7841 7.5252 19 1 6.4550 1.7615 7.1872 20 6 6.6933 3.0581 8.8765 21 7 6.7898 4.3045 9.2886 22 14 6.7687 1.6579 10.1107 23 1 6.6370 0.3619 9.3978 24 1 8.0692 1.6985 10.8266 25 1 5.6607 1.8000 11.0890 26 6 3.5660 -0.6969 0.0037 27 8 2.2832 -1.0929 0.0060 28 1 -0.3633 -1.0277 0.0062 29 1 -0.3633 0.5190 0.8869 30 1 -0.3633 0.5084 -0.8930 31 1 2.7383 3.5675 -0.5925 32 1 3.3677 4.4153 0.8405 33 1 2.6970 2.7744 1.0006 34 1 5.4165 4.1596 -2.1054 35 1 4.6473 5.3248 -1.0014 36 1 6.4051 5.3843 -1.2737 37 1 6.8422 5.1484 1.2228 38 1 5.0741 5.2217 1.4151 39 1 5.9574 2.6769 2.2643 40 1 5.3429 2.5721 4.8863 41 1 7.1109 2.4990 4.6933 42 1 6.9011 4.4959 10.2330 43 1 4.4361 -1.3365 0.0076 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334156484.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:34 Heat of formation + Delta-G solvation = -40.429604 kcal Electronic energy + Delta-G solvation = -27105.331910 eV Core-core repulsion = 23086.277263 eV Total energy + Delta-G solvation = -4019.054647 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.83321 -40.37431 -38.95651 -36.82792 -35.43411 -33.96492 -32.71408 -32.41032 -31.73329 -29.36507 -28.30511 -27.12533 -26.01232 -25.39178 -24.74334 -22.24374 -21.28671 -20.28562 -19.68608 -18.10691 -17.82993 -17.34708 -17.13365 -16.60354 -16.29030 -15.96328 -15.32295 -15.08976 -14.78908 -14.64808 -14.29591 -13.98845 -13.97465 -13.64883 -13.49270 -13.31983 -13.07776 -13.03255 -12.88802 -12.67760 -12.61378 -12.43925 -12.13815 -11.74174 -11.58876 -11.24282 -11.05646 -10.99851 -10.90486 -10.74048 -10.38318 -9.78865 -9.43646 -9.38069 -9.06022 -8.93662 -8.84443 -8.20990 -6.47560 -6.20016 -3.90081 0.72864 1.59566 2.17475 2.55931 2.93036 3.07029 3.13944 3.22728 3.29531 3.34839 3.43221 3.75830 4.19180 4.22195 4.38503 4.51856 4.78030 4.81417 4.88980 4.94882 5.00738 5.03786 5.15146 5.18821 5.21849 5.28155 5.35558 5.38117 5.46527 5.55622 5.59084 5.70983 5.76732 5.85691 5.91571 5.94209 6.18082 6.24616 6.64683 6.93649 7.12717 7.61901 7.73043 7.77745 8.37528 8.64638 9.25473 10.87506 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010586 B = 0.002789 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2644.399264 B =10036.358649 C =11767.074061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.195 3.805 3 N -0.457 5.457 4 C -0.070 4.070 5 C 0.600 3.400 6 O -0.536 6.536 7 N -0.593 5.593 8 C 0.084 3.916 9 C 0.123 3.877 10 H 0.110 0.890 11 C -0.156 4.156 12 C 0.112 3.888 13 N -0.734 5.734 14 C 0.533 3.467 15 O -0.519 6.519 16 C -0.153 4.153 17 S -0.059 6.059 18 C -0.534 4.534 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.015 3.985 27 O -0.196 6.196 28 H 0.089 0.911 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.397 0.603 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.268 0.732 43 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.138 -8.241 -25.248 29.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.014 4.014 3 N -0.188 5.188 4 C -0.190 4.190 5 C 0.388 3.612 6 O -0.413 6.413 7 N -0.325 5.325 8 C -0.058 4.058 9 C 0.020 3.980 10 H 0.128 0.872 11 C -0.215 4.215 12 C -0.013 4.013 13 N -0.389 5.389 14 C 0.319 3.681 15 O -0.393 6.393 16 C -0.303 4.303 17 S 0.167 5.833 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.059 4.059 27 O -0.082 6.082 28 H 0.108 0.892 29 H 0.119 0.881 30 H 0.117 0.883 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.107 0.893 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.231 0.769 40 H 0.105 0.895 41 H 0.107 0.893 42 H 0.077 0.923 43 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -11.660 -5.729 -24.839 28.032 hybrid contribution 0.194 -3.376 0.521 3.421 sum -11.466 -9.105 -24.318 28.386 Atomic orbital electron populations 1.20328 0.80849 1.05049 1.05410 1.26487 0.96783 0.78394 0.99720 1.71003 1.00618 1.29175 1.18019 1.21669 0.92120 0.92878 1.12300 1.16850 0.86246 0.81620 0.76487 1.90843 1.24480 1.74890 1.51109 1.47695 1.09700 1.05123 1.69965 1.21988 0.82190 0.99694 1.01928 1.21476 0.89695 0.91943 0.94888 0.87234 1.22047 1.03129 0.99092 0.97197 1.21654 1.02846 0.92411 0.84388 1.45923 1.76758 1.10105 1.06122 1.20279 0.75205 0.89467 0.83167 1.90694 1.48007 1.16011 1.84615 1.23522 1.04829 1.02413 0.99582 1.85354 1.95285 1.10299 0.92324 1.22915 1.57856 0.93836 0.93647 0.90925 1.24991 0.94586 0.96440 0.97593 1.70028 1.46452 1.17856 1.15982 0.86116 0.77906 0.81147 0.80318 1.19633 1.20555 1.20568 1.25294 0.84881 0.95649 1.00038 1.84410 1.16723 1.38015 1.69069 0.89176 0.88083 0.88274 0.92262 0.91265 0.89276 0.91801 0.91702 0.90646 0.90227 0.91133 0.76858 0.89472 0.89266 0.92260 0.75297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.20 10.51 36.01 0.38 0.18 16 2 C 0.19 1.51 8.30 -13.08 -0.11 1.40 16 3 N -0.46 -4.43 8.10 -7.65 -0.06 -4.49 16 4 C -0.07 -0.74 6.60 -83.02 -0.55 -1.29 16 5 C 0.60 7.14 7.36 -12.52 -0.09 7.05 16 6 O -0.54 -7.50 16.24 5.27 0.09 -7.42 16 7 N -0.59 -6.19 2.24 -175.20 -0.39 -6.59 16 8 C 0.08 0.79 8.32 59.85 0.50 1.28 16 9 C 0.12 1.22 2.79 -67.93 -0.19 1.03 16 10 H 0.11 1.21 6.91 -51.93 -0.36 0.85 16 11 C -0.16 -1.16 9.19 37.16 0.34 -0.82 16 12 C 0.11 1.36 4.93 -4.04 -0.02 1.34 16 13 N -0.73 -10.96 5.39 -60.29 -0.32 -11.29 16 14 C 0.53 10.48 7.85 -10.99 -0.09 10.39 16 15 O -0.52 -12.04 15.86 5.56 0.09 -11.95 16 16 C -0.15 -3.26 6.16 36.01 0.22 -3.04 16 17 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 18 C -0.53 -15.54 9.50 30.94 0.29 -15.25 16 19 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 20 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 21 N -0.87 -26.47 13.22 55.49 0.73 -25.73 16 22 Si 0.92 21.73 29.55 -169.99 -5.02 16.71 16 23 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 C 0.02 0.13 11.95 29.96 0.36 0.49 16 27 O -0.20 -1.64 10.73 6.51 0.07 -1.57 16 28 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.10 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.10 0.22 8.14 -51.93 -0.42 -0.21 16 31 H 0.06 0.50 8.13 -51.92 -0.42 0.07 16 32 H 0.07 0.63 6.54 -51.93 -0.34 0.29 16 33 H 0.09 0.92 5.90 -51.93 -0.31 0.62 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.45 7.67 -51.93 -0.40 0.05 16 36 H 0.07 0.49 8.14 -51.92 -0.42 0.06 16 37 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.07 0.87 6.87 -51.93 -0.36 0.51 16 39 H 0.40 5.58 7.87 -40.82 -0.32 5.26 16 40 H 0.09 1.74 8.14 -51.91 -0.42 1.32 16 41 H 0.09 1.80 8.14 -51.92 -0.42 1.38 16 42 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 43 H 0.23 1.40 8.06 -52.49 -0.42 0.97 16 LS Contribution 381.37 15.07 5.75 5.75 Total: -1.00 -37.28 381.37 -6.19 -43.48 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -5.85 Total: 2.19 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: 0.95 Total: 4.79 kcal Atomic # 7 Polarization: -48.05 SS G_CDS: -0.05 Total: -48.10 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: 0.24 Total: -20.94 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -37.28 -6.19 -43.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334156484.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.046 kcal (2) G-P(sol) polarization free energy of solvation -37.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds