Wall clock time and date at job start Sat Apr 11 2020 06:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29939 * 125.37236 * 2 1 4 4 C 1.36071 * 108.47327 * 180.16885 * 3 2 1 5 5 C 1.47421 * 126.44943 * 179.82545 * 4 3 2 6 6 O 1.21607 * 120.00465 * 185.73541 * 5 4 3 7 7 N 1.34780 * 119.99835 * 5.74088 * 5 4 3 8 8 C 1.46500 * 120.00160 * 5.34353 * 7 5 4 9 9 C 1.46500 * 119.99783 * 185.34729 * 7 5 4 10 10 H 1.08993 * 109.47353 * 359.97438 * 9 7 5 11 11 C 1.53005 * 109.46849 * 119.99951 * 9 7 5 12 12 C 1.52999 * 109.46923 * 239.99526 * 9 7 5 13 13 N 1.46502 * 109.47214 * 55.00031 * 12 9 7 14 14 C 1.34775 * 120.00232 * 179.97438 * 13 12 9 15 15 O 1.21278 * 119.99705 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00026 * 180.02562 * 14 13 12 17 17 S 1.80998 * 109.47074 * 180.02562 * 16 14 13 18 18 C 1.76200 * 99.99964 * 179.97438 * 17 16 14 19 19 H 1.07999 * 120.00120 * 359.97438 * 18 17 16 20 20 C 1.38798 * 119.99721 * 179.97438 * 18 17 16 21 21 N 1.31630 * 120.00554 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99735 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47244 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47044 * 119.99914 * 22 20 18 25 25 H 1.48493 * 109.47696 * 239.99872 * 22 20 18 26 26 C 1.36088 * 107.10279 * 359.56634 * 4 3 2 27 27 O 1.34051 * 125.38261 * 179.68564 * 2 1 3 28 28 H 1.09003 * 109.46880 * 180.34783 * 1 2 3 29 29 H 1.08999 * 109.46985 * 300.33612 * 1 2 3 30 30 H 1.08993 * 109.47333 * 60.34365 * 1 2 3 31 31 H 1.09007 * 109.46879 * 275.31843 * 8 7 5 32 32 H 1.08992 * 109.47546 * 155.31647 * 8 7 5 33 33 H 1.09001 * 109.46846 * 35.31358 * 8 7 5 34 34 H 1.08997 * 109.46967 * 299.99546 * 11 9 7 35 35 H 1.08999 * 109.47626 * 60.00062 * 11 9 7 36 36 H 1.09007 * 109.46994 * 179.97438 * 11 9 7 37 37 H 1.08998 * 109.47186 * 175.00197 * 12 9 7 38 38 H 1.09006 * 109.47232 * 295.00089 * 12 9 7 39 39 H 0.96999 * 119.99676 * 0.02562 * 13 12 9 40 40 H 1.09006 * 109.47127 * 300.00212 * 16 14 13 41 41 H 1.08989 * 109.47057 * 60.00200 * 16 14 13 42 42 H 0.96995 * 120.00473 * 180.02562 * 21 20 18 43 43 H 1.07995 * 126.52651 * 180.28754 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2592 1.0595 0.0000 4 6 3.5612 0.6640 -0.0038 5 6 4.7439 1.5440 -0.0088 6 8 5.8569 1.0663 -0.1171 7 7 4.5916 2.8782 0.1069 8 6 3.2637 3.4452 0.3548 9 6 5.7540 3.7614 -0.0154 10 1 6.6471 3.1635 -0.1966 11 6 5.5404 4.7268 -1.1830 12 6 5.9279 4.5577 1.2795 13 7 6.0129 3.6338 2.4133 14 6 6.1692 4.1133 3.6631 15 8 6.2391 5.3097 3.8492 16 6 6.2572 3.1629 4.8293 17 16 6.4628 4.1049 6.3611 18 6 6.5346 2.7841 7.5252 19 1 6.4550 1.7615 7.1872 20 6 6.6933 3.0581 8.8765 21 7 6.7898 4.3045 9.2886 22 14 6.7687 1.6579 10.1107 23 1 6.6370 0.3619 9.3978 24 1 8.0692 1.6985 10.8266 25 1 5.6607 1.8000 11.0890 26 6 3.5660 -0.6969 0.0037 27 8 2.2832 -1.0929 0.0060 28 1 -0.3633 -1.0277 0.0062 29 1 -0.3633 0.5190 0.8869 30 1 -0.3633 0.5084 -0.8930 31 1 2.7383 3.5675 -0.5925 32 1 3.3677 4.4153 0.8405 33 1 2.6970 2.7744 1.0006 34 1 5.4165 4.1596 -2.1054 35 1 4.6473 5.3248 -1.0014 36 1 6.4051 5.3843 -1.2737 37 1 6.8422 5.1484 1.2228 38 1 5.0741 5.2217 1.4151 39 1 5.9574 2.6769 2.2643 40 1 5.3429 2.5721 4.8863 41 1 7.1109 2.4990 4.6933 42 1 6.9011 4.4959 10.2330 43 1 4.4361 -1.3365 0.0076 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334156484.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:33 Heat of formation + Delta-G solvation = -68.431385 kcal Electronic energy + Delta-G solvation = -27106.546158 eV Core-core repulsion = 23086.277263 eV Total energy + Delta-G solvation = -4020.268895 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.47178 -41.34893 -40.39052 -37.82911 -36.15117 -35.17751 -34.60826 -33.33719 -32.59584 -30.90034 -28.82403 -27.90285 -27.76867 -26.86976 -25.56374 -22.91101 -22.02347 -21.78386 -20.54327 -19.81659 -18.87720 -18.06980 -17.89846 -17.85077 -17.59003 -17.03210 -16.90399 -16.51689 -16.29015 -15.88092 -15.36048 -14.99804 -14.78421 -14.76268 -14.53551 -14.27257 -14.07857 -13.94561 -13.88503 -13.50526 -13.44393 -13.25613 -13.18926 -13.09550 -12.93018 -12.90652 -12.60189 -12.28099 -12.06208 -11.73885 -11.66857 -11.22511 -11.17852 -11.04013 -10.32483 -10.19672 -10.12735 -9.74489 -8.69592 -8.37085 -6.15483 0.03083 0.92981 1.23284 1.39839 1.43741 1.53753 1.55727 1.58068 1.79818 2.11357 2.22587 2.25749 2.83644 2.96913 3.28001 3.46015 3.64927 3.78821 3.88296 3.99691 4.15753 4.21388 4.21873 4.41516 4.42972 4.52462 4.54469 4.63642 4.69093 4.71390 4.73785 4.77378 4.80172 4.95516 5.07275 5.21155 5.24859 5.33522 5.39508 5.48370 6.11749 6.17635 6.34342 6.45515 6.90663 7.04120 7.13065 8.72465 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010586 B = 0.002789 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2644.399264 B =10036.358649 C =11767.074061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.197 3.803 3 N -0.476 5.476 4 C -0.098 4.098 5 C 0.597 3.403 6 O -0.565 6.565 7 N -0.592 5.592 8 C 0.090 3.910 9 C 0.130 3.870 10 H 0.100 0.900 11 C -0.149 4.149 12 C 0.111 3.889 13 N -0.713 5.713 14 C 0.537 3.463 15 O -0.558 6.558 16 C -0.131 4.131 17 S -0.140 6.140 18 C -0.549 4.549 19 H 0.079 0.921 20 C 0.015 3.985 21 N -0.910 5.910 22 Si 0.999 3.001 23 H -0.259 1.259 24 H -0.273 1.273 25 H -0.271 1.271 26 C 0.022 3.978 27 O -0.198 6.198 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.114 0.886 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.405 0.595 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.272 0.728 43 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.287 -10.016 -26.224 31.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.012 4.012 3 N -0.207 5.207 4 C -0.217 4.217 5 C 0.385 3.615 6 O -0.445 6.445 7 N -0.323 5.323 8 C -0.052 4.052 9 C 0.027 3.973 10 H 0.118 0.882 11 C -0.207 4.207 12 C -0.014 4.014 13 N -0.366 5.366 14 C 0.322 3.678 15 O -0.436 6.436 16 C -0.283 4.283 17 S 0.087 5.913 18 C -0.697 4.697 19 H 0.097 0.903 20 C -0.190 4.190 21 N -0.546 5.546 22 Si 0.821 3.179 23 H -0.183 1.183 24 H -0.198 1.198 25 H -0.196 1.196 26 C -0.053 4.053 27 O -0.085 6.085 28 H 0.126 0.874 29 H 0.127 0.873 30 H 0.132 0.868 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.106 0.894 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.240 0.760 40 H 0.121 0.879 41 H 0.121 0.879 42 H 0.081 0.919 43 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -12.830 -7.505 -25.866 29.832 hybrid contribution 0.486 -2.839 0.694 2.963 sum -12.344 -10.344 -25.171 29.883 Atomic orbital electron populations 1.20591 0.77923 1.06602 1.06421 1.27390 0.98161 0.77771 0.97881 1.70973 1.00381 1.30072 1.19274 1.21651 0.92255 0.93478 1.14304 1.17076 0.86330 0.82040 0.76033 1.90817 1.25551 1.75420 1.52666 1.47782 1.10173 1.04922 1.69405 1.21976 0.81588 0.99295 1.02357 1.21440 0.89383 0.91959 0.94488 0.88166 1.22009 1.04160 0.98669 0.95881 1.21874 1.03144 0.92260 0.84073 1.45742 1.74588 1.10947 1.05330 1.19958 0.75279 0.88454 0.84072 1.90683 1.50340 1.17351 1.85265 1.23365 1.06124 1.01964 0.96816 1.85474 1.95681 1.13464 0.96696 1.23226 1.58220 0.93939 0.94303 0.90256 1.26122 0.93660 0.99447 0.99785 1.70176 1.47277 1.20419 1.16726 0.84899 0.78241 0.77545 0.77216 1.18295 1.19782 1.19644 1.25698 0.85580 0.95410 0.98588 1.84443 1.16642 1.38309 1.69068 0.87370 0.87319 0.86777 0.91146 0.91035 0.90188 0.91485 0.90849 0.89354 0.90014 0.90798 0.76027 0.87923 0.87864 0.91876 0.73402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.26 10.51 71.24 0.75 0.49 16 2 C 0.20 2.75 8.30 88.39 0.73 3.48 16 3 N -0.48 -8.71 8.10 -293.03 -2.37 -11.08 16 4 C -0.10 -2.01 6.60 40.41 0.27 -1.75 16 5 C 0.60 13.86 7.36 86.66 0.64 14.49 16 6 O -0.56 -15.65 16.24 -4.05 -0.07 -15.71 16 7 N -0.59 -11.78 2.24 -826.47 -1.85 -13.63 16 8 C 0.09 1.57 8.32 127.77 1.06 2.63 16 9 C 0.13 2.43 2.79 44.99 0.13 2.56 16 10 H 0.10 2.13 6.91 -2.39 -0.02 2.11 16 11 C -0.15 -1.93 9.19 71.98 0.66 -1.27 16 12 C 0.11 2.57 4.93 86.38 0.43 3.00 16 13 N -0.71 -20.71 5.39 -463.06 -2.49 -23.20 16 14 C 0.54 21.02 7.85 87.66 0.69 21.71 16 15 O -0.56 -26.26 15.86 -3.02 -0.05 -26.31 16 16 C -0.13 -5.59 6.16 71.24 0.44 -5.15 16 17 S -0.14 -7.98 20.57 -56.49 -1.16 -9.14 16 18 C -0.55 -32.12 9.50 67.95 0.65 -31.48 16 19 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 20 C 0.01 0.85 5.49 84.86 0.47 1.32 16 21 N -0.91 -56.31 13.22 21.65 0.29 -56.02 16 22 Si 1.00 44.24 29.55 68.60 2.03 46.27 16 23 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 24 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 25 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 26 C 0.02 0.35 11.95 67.32 0.80 1.16 16 27 O -0.20 -3.03 10.73 0.38 0.00 -3.03 16 28 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 29 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.11 0.20 8.14 -2.39 -0.02 0.19 16 31 H 0.07 1.08 8.13 -2.38 -0.02 1.06 16 32 H 0.07 1.20 6.54 -2.39 -0.02 1.19 16 33 H 0.08 1.59 5.90 -2.39 -0.01 1.58 16 34 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.07 0.85 7.67 -2.39 -0.02 0.83 16 36 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 37 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.07 1.73 6.87 -2.38 -0.02 1.71 16 39 H 0.40 10.93 7.87 -92.71 -0.73 10.20 16 40 H 0.10 4.03 8.14 -2.39 -0.02 4.01 16 41 H 0.10 4.09 8.14 -2.40 -0.02 4.07 16 42 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 43 H 0.25 2.75 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -82.04 381.37 2.34 -79.69 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: 0.32 Total: 20.99 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: 7.71 Total: 11.18 kcal Atomic # 7 Polarization: -97.50 SS G_CDS: -6.44 Total: -103.94 kcal Atomic # 8 Polarization: -44.94 SS G_CDS: -0.11 Total: -45.05 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 16 Polarization: -7.98 SS G_CDS: -1.16 Total: -9.14 kcal Total: -82.04 2.34 -79.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334156484.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.261 kcal (2) G-P(sol) polarization free energy of solvation -82.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds