Wall clock time and date at job start Sat Apr 11 2020 06:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34225 * 117.00082 * 2 1 4 4 O 1.20829 * 119.99976 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00186 * 180.02562 * 3 2 1 6 6 C 1.52997 * 109.47200 * 180.02562 * 5 3 2 7 7 N 1.46501 * 109.47032 * 179.97438 * 6 5 3 8 8 C 1.36922 * 120.00001 * 274.16573 * 7 6 5 9 9 H 1.08004 * 119.99653 * 127.93397 * 8 7 6 10 10 C 1.38962 * 120.00046 * 307.93491 * 8 7 6 11 11 N 1.31424 * 119.99846 * 2.98081 * 10 8 7 12 12 Si 1.86795 * 120.00195 * 182.98736 * 10 8 7 13 13 H 1.48500 * 109.47710 * 89.99674 * 12 10 8 14 14 H 1.48502 * 109.47321 * 209.99835 * 12 10 8 15 15 H 1.48500 * 109.46987 * 329.99550 * 12 10 8 16 16 C 1.34783 * 120.00024 * 94.16523 * 7 6 5 17 17 O 1.21791 * 119.99764 * 4.03506 * 16 7 6 18 18 C 1.41843 * 119.99922 * 184.03675 * 16 7 6 19 19 S 1.76199 * 126.11546 * 352.78583 * 18 16 7 20 20 C 1.70913 * 90.42611 * 179.97438 * 19 18 16 21 21 N 1.37815 * 124.73511 * 180.02562 * 20 19 18 22 22 C 1.46504 * 119.99889 * 180.02562 * 21 20 19 23 23 C 1.46495 * 120.00279 * 0.02562 * 21 20 19 24 24 N 1.30260 * 110.53078 * 0.02562 * 20 19 18 25 25 C 1.30854 * 117.27230 * 359.97438 * 24 20 19 26 26 C 1.50693 * 122.99851 * 179.97438 * 25 24 20 27 27 H 1.09002 * 109.47254 * 299.99540 * 1 2 3 28 28 H 1.08996 * 109.47508 * 59.99988 * 1 2 3 29 29 H 1.09001 * 109.47386 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47215 * 59.99574 * 5 3 2 31 31 H 1.09001 * 109.47267 * 299.99911 * 5 3 2 32 32 H 1.08995 * 109.47779 * 60.00078 * 6 5 3 33 33 H 1.09004 * 109.47092 * 299.99313 * 6 5 3 34 34 H 0.97003 * 120.00100 * 180.02562 * 11 10 8 35 35 H 1.09003 * 109.47133 * 90.00012 * 22 21 20 36 36 H 1.08997 * 109.47235 * 209.99936 * 22 21 20 37 37 H 1.08997 * 109.47116 * 330.00198 * 22 21 20 38 38 H 1.09003 * 109.46956 * 89.99764 * 23 21 20 39 39 H 1.08999 * 109.47505 * 210.00011 * 23 21 20 40 40 H 1.09001 * 109.47008 * 330.00583 * 23 21 20 41 41 H 1.09001 * 109.47475 * 90.02587 * 26 25 24 42 42 H 1.09002 * 109.47130 * 210.02499 * 26 25 24 43 43 H 1.09004 * 109.47250 * 330.02691 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0000 2.7420 0.0002 7 7 5.4630 2.8187 0.0002 8 6 6.1512 2.7679 1.1829 9 1 6.9573 2.0601 1.3085 10 6 5.8125 3.6269 2.2213 11 7 4.7943 4.4473 2.0898 12 14 6.8044 3.6155 3.8041 13 1 7.9214 4.5879 3.6954 14 1 5.9271 3.9945 4.9408 15 1 7.3531 2.2550 4.0346 16 6 6.1316 2.9392 -1.1639 17 8 5.5178 3.0583 -2.2090 18 6 7.5500 2.9273 -1.1716 19 16 8.5965 2.9436 0.2458 20 6 9.9789 2.9136 -0.7587 21 7 11.2799 2.9099 -0.3041 22 6 12.3898 2.8838 -1.2601 23 6 11.5532 2.9321 1.1350 24 7 9.6313 2.8947 -2.0139 25 6 8.3504 2.9009 -2.2814 26 6 7.8053 2.8817 -3.6862 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 3.9556 0.7809 -0.8907 31 1 3.9564 0.7806 0.8892 32 1 3.6108 3.2356 0.8906 33 1 3.6100 3.2367 -0.8894 34 1 4.5580 5.0472 2.8146 35 1 12.6741 3.9048 -1.5147 36 1 13.2414 2.3701 -0.8142 37 1 12.0796 2.3572 -2.1626 38 1 11.6119 1.9101 1.5094 39 1 12.4998 3.4408 1.3173 40 1 10.7511 3.4618 1.6489 41 1 7.6648 1.8496 -4.0074 42 1 6.8487 3.4036 -3.7119 43 1 8.5081 3.3779 -4.3555 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335816078.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:36 Heat of formation + Delta-G solvation = -62.741504 kcal Electronic energy + Delta-G solvation = -28078.262347 eV Core-core repulsion = 24058.240183 eV Total energy + Delta-G solvation = -4020.022163 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.04773 -39.35018 -38.38245 -36.39372 -36.08693 -34.96138 -32.22606 -31.01456 -30.37117 -28.20929 -27.91877 -27.06630 -25.85363 -25.32692 -23.35717 -21.51672 -20.69260 -19.81801 -18.81536 -17.61050 -17.34436 -16.68277 -16.27862 -16.15346 -15.88708 -15.39995 -15.25503 -14.69921 -14.28690 -14.10825 -13.91874 -13.60134 -13.31378 -12.97062 -12.75524 -12.57765 -12.56375 -12.49942 -12.18434 -12.02646 -11.97235 -11.85641 -11.79592 -11.73609 -11.36997 -11.12208 -10.99271 -10.54853 -10.53462 -10.25494 -10.07747 -10.01457 -9.48117 -9.26849 -8.73152 -8.45609 -8.29141 -7.60305 -6.88205 -6.56803 -4.53402 1.43172 2.07724 2.68017 2.74636 2.98646 3.03105 3.06691 3.08492 3.26618 3.47726 3.86495 4.42188 4.75533 4.83708 4.93546 5.24559 5.25583 5.31221 5.32714 5.34352 5.36355 5.64417 5.65441 5.67293 5.83789 5.88675 5.93377 5.98821 6.29569 6.30283 6.33499 6.48159 6.65777 6.74228 6.89481 6.92518 7.03272 7.14864 7.42509 7.49921 7.84974 8.10360 8.20105 8.65638 8.76906 9.31801 9.77263 10.35948 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012560 B = 0.004095 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.752967 B = 6835.177027 C = 8382.345841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.367 6.367 3 C 0.467 3.533 4 O -0.505 6.505 5 C -0.123 4.123 6 C 0.128 3.872 7 N -0.447 5.447 8 C -0.336 4.336 9 H 0.100 0.900 10 C 0.065 3.935 11 N -0.835 5.835 12 Si 0.901 3.099 13 H -0.265 1.265 14 H -0.275 1.275 15 H -0.259 1.259 16 C 0.566 3.434 17 O -0.590 6.590 18 C -0.309 4.309 19 S 0.219 5.781 20 C 0.226 3.774 21 N -0.590 5.590 22 C 0.104 3.896 23 C 0.096 3.904 24 N -0.569 5.569 25 C 0.165 3.835 26 C -0.081 4.081 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.105 0.895 32 H 0.118 0.882 33 H 0.069 0.931 34 H 0.278 0.722 35 H 0.044 0.956 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.055 0.945 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.101 0.899 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.995 -5.935 1.354 8.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.284 6.284 3 C 0.309 3.691 4 O -0.392 6.392 5 C -0.162 4.162 6 C 0.004 3.996 7 N -0.166 5.166 8 C -0.473 4.473 9 H 0.116 0.884 10 C -0.147 4.147 11 N -0.468 5.468 12 Si 0.725 3.275 13 H -0.190 1.190 14 H -0.200 1.200 15 H -0.182 1.182 16 C 0.357 3.643 17 O -0.477 6.477 18 C -0.435 4.435 19 S 0.480 5.520 20 C -0.137 4.137 21 N -0.310 5.310 22 C -0.042 4.042 23 C -0.048 4.048 24 N -0.294 5.294 25 C 0.025 3.975 26 C -0.140 4.140 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.123 0.877 32 H 0.135 0.865 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.063 0.937 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.074 0.926 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.120 0.880 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.920 -5.386 1.749 8.192 hybrid contribution 0.058 0.083 0.075 0.126 sum 5.978 -5.303 1.824 8.196 Atomic orbital electron populations 1.23160 0.77415 1.02992 1.02322 1.86539 1.22709 1.34476 1.84674 1.24087 0.92404 0.80860 0.71715 1.90651 1.67277 1.36221 1.45050 1.21906 0.85725 1.03445 1.05139 1.21267 0.82032 0.90850 1.05496 1.43116 1.04511 1.64429 1.04592 1.19223 1.15700 1.20618 0.91739 0.88390 1.25723 0.95541 0.93486 0.99965 1.69721 1.23975 1.19488 1.33573 0.86294 0.80358 0.79986 0.80910 1.18970 1.20043 1.18241 1.16079 0.85018 0.78660 0.84516 1.90614 1.68982 1.56048 1.32067 1.24077 0.98814 1.25761 0.94834 1.85299 0.90379 1.69645 1.06685 1.25715 0.93751 0.97465 0.96738 1.45389 1.01076 1.78892 1.05596 1.21539 0.88074 1.01004 0.93537 1.21715 1.02122 1.01816 0.79113 1.65946 1.18112 1.27378 1.17955 1.20276 0.85826 0.95157 0.96272 1.20536 1.01986 1.02475 0.89026 0.92173 0.92196 0.88669 0.88698 0.87660 0.86473 0.91290 0.91074 0.93741 0.92123 0.90622 0.92610 0.90778 0.91123 0.91516 0.88009 0.92276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.56 101.05 1.07 1.50 16 2 O -0.37 -5.90 10.56 -39.24 -0.41 -6.32 16 3 C 0.47 8.81 7.96 36.01 0.29 9.09 16 4 O -0.51 -10.83 15.73 -18.75 -0.29 -11.13 16 5 C -0.12 -2.39 6.12 -27.88 -0.17 -2.56 16 6 C 0.13 2.98 4.41 -4.04 -0.02 2.96 16 7 N -0.45 -10.85 2.46 -117.97 -0.29 -11.14 16 8 C -0.34 -7.85 6.64 -15.01 -0.10 -7.95 16 9 H 0.10 2.20 5.49 -32.87 -0.18 2.02 16 10 C 0.07 1.51 5.38 -17.46 -0.09 1.42 16 11 N -0.84 -20.78 11.18 55.50 0.62 -20.16 16 12 Si 0.90 17.50 29.55 -169.99 -5.02 12.48 16 13 H -0.26 -5.04 7.11 56.52 0.40 -4.63 16 14 H -0.28 -5.38 7.11 56.52 0.40 -4.97 16 15 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 16 C 0.57 14.02 7.43 -14.88 -0.11 13.91 16 17 O -0.59 -15.32 13.65 5.11 0.07 -15.26 16 18 C -0.31 -7.05 6.17 -38.70 -0.24 -7.29 16 19 S 0.22 4.35 16.85 -107.50 -1.81 2.54 16 20 C 0.23 4.24 7.71 -87.98 -0.68 3.56 16 21 N -0.59 -8.81 3.36 -192.01 -0.64 -9.45 16 22 C 0.10 1.27 10.54 59.85 0.63 1.90 16 23 C 0.10 1.09 10.39 59.84 0.62 1.71 16 24 N -0.57 -11.60 9.71 -10.91 -0.11 -11.70 16 25 C 0.16 3.53 6.83 -83.51 -0.57 2.96 16 26 C -0.08 -1.54 9.77 36.00 0.35 -1.19 16 27 H 0.06 0.73 8.13 -51.93 -0.42 0.30 16 28 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 29 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 31 H 0.11 1.93 8.14 -51.93 -0.42 1.51 16 32 H 0.12 2.96 5.64 -51.93 -0.29 2.66 16 33 H 0.07 1.73 7.21 -51.93 -0.37 1.36 16 34 H 0.28 6.52 8.31 -40.82 -0.34 6.18 16 35 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.55 8.07 -51.93 -0.42 0.14 16 37 H 0.08 1.03 7.59 -51.93 -0.39 0.64 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.63 8.07 -51.93 -0.42 0.21 16 40 H 0.07 0.87 7.01 -51.93 -0.36 0.50 16 41 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 42 H 0.10 2.11 5.85 -51.93 -0.30 1.81 16 43 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 370.78 15.07 5.59 5.59 Total: -1.00 -30.50 370.78 -7.02 -37.52 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -5.69 Total: 7.02 kcal Atomic # 6 Polarization: 19.04 SS G_CDS: 0.98 Total: 20.02 kcal Atomic # 7 Polarization: -52.04 SS G_CDS: -0.42 Total: -52.46 kcal Atomic # 8 Polarization: -32.06 SS G_CDS: -0.64 Total: -32.70 kcal Atomic # 14 Polarization: 17.50 SS G_CDS: -5.02 Total: 12.48 kcal Atomic # 16 Polarization: 4.35 SS G_CDS: -1.81 Total: 2.54 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.50 -7.02 -37.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335816078.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.220 kcal (2) G-P(sol) polarization free energy of solvation -30.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds