Wall clock time and date at job start Sat Apr 11 2020 06:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34225 * 117.00082 * 2 1 4 4 O 1.20829 * 119.99976 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00186 * 180.02562 * 3 2 1 6 6 C 1.52997 * 109.47200 * 180.02562 * 5 3 2 7 7 N 1.46501 * 109.47032 * 179.97438 * 6 5 3 8 8 C 1.36922 * 120.00001 * 274.16573 * 7 6 5 9 9 H 1.08004 * 119.99653 * 127.93397 * 8 7 6 10 10 C 1.38962 * 120.00046 * 307.93491 * 8 7 6 11 11 N 1.31424 * 119.99846 * 2.98081 * 10 8 7 12 12 Si 1.86795 * 120.00195 * 182.98736 * 10 8 7 13 13 H 1.48500 * 109.47710 * 89.99674 * 12 10 8 14 14 H 1.48502 * 109.47321 * 209.99835 * 12 10 8 15 15 H 1.48500 * 109.46987 * 329.99550 * 12 10 8 16 16 C 1.34783 * 120.00024 * 94.16523 * 7 6 5 17 17 O 1.21791 * 119.99764 * 4.03506 * 16 7 6 18 18 C 1.41843 * 119.99922 * 184.03675 * 16 7 6 19 19 S 1.76199 * 126.11546 * 352.78583 * 18 16 7 20 20 C 1.70913 * 90.42611 * 179.97438 * 19 18 16 21 21 N 1.37815 * 124.73511 * 180.02562 * 20 19 18 22 22 C 1.46504 * 119.99889 * 180.02562 * 21 20 19 23 23 C 1.46495 * 120.00279 * 0.02562 * 21 20 19 24 24 N 1.30260 * 110.53078 * 0.02562 * 20 19 18 25 25 C 1.30854 * 117.27230 * 359.97438 * 24 20 19 26 26 C 1.50693 * 122.99851 * 179.97438 * 25 24 20 27 27 H 1.09002 * 109.47254 * 299.99540 * 1 2 3 28 28 H 1.08996 * 109.47508 * 59.99988 * 1 2 3 29 29 H 1.09001 * 109.47386 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47215 * 59.99574 * 5 3 2 31 31 H 1.09001 * 109.47267 * 299.99911 * 5 3 2 32 32 H 1.08995 * 109.47779 * 60.00078 * 6 5 3 33 33 H 1.09004 * 109.47092 * 299.99313 * 6 5 3 34 34 H 0.97003 * 120.00100 * 180.02562 * 11 10 8 35 35 H 1.09003 * 109.47133 * 90.00012 * 22 21 20 36 36 H 1.08997 * 109.47235 * 209.99936 * 22 21 20 37 37 H 1.08997 * 109.47116 * 330.00198 * 22 21 20 38 38 H 1.09003 * 109.46956 * 89.99764 * 23 21 20 39 39 H 1.08999 * 109.47505 * 210.00011 * 23 21 20 40 40 H 1.09001 * 109.47008 * 330.00583 * 23 21 20 41 41 H 1.09001 * 109.47475 * 90.02587 * 26 25 24 42 42 H 1.09002 * 109.47130 * 210.02499 * 26 25 24 43 43 H 1.09004 * 109.47250 * 330.02691 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0000 2.7420 0.0002 7 7 5.4630 2.8187 0.0002 8 6 6.1512 2.7679 1.1829 9 1 6.9573 2.0601 1.3085 10 6 5.8125 3.6269 2.2213 11 7 4.7943 4.4473 2.0898 12 14 6.8044 3.6155 3.8041 13 1 7.9214 4.5879 3.6954 14 1 5.9271 3.9945 4.9408 15 1 7.3531 2.2550 4.0346 16 6 6.1316 2.9392 -1.1639 17 8 5.5178 3.0583 -2.2090 18 6 7.5500 2.9273 -1.1716 19 16 8.5965 2.9436 0.2458 20 6 9.9789 2.9136 -0.7587 21 7 11.2799 2.9099 -0.3041 22 6 12.3898 2.8838 -1.2601 23 6 11.5532 2.9321 1.1350 24 7 9.6313 2.8947 -2.0139 25 6 8.3504 2.9009 -2.2814 26 6 7.8053 2.8817 -3.6862 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 3.9556 0.7809 -0.8907 31 1 3.9564 0.7806 0.8892 32 1 3.6108 3.2356 0.8906 33 1 3.6100 3.2367 -0.8894 34 1 4.5580 5.0472 2.8146 35 1 12.6741 3.9048 -1.5147 36 1 13.2414 2.3701 -0.8142 37 1 12.0796 2.3572 -2.1626 38 1 11.6119 1.9101 1.5094 39 1 12.4998 3.4408 1.3173 40 1 10.7511 3.4618 1.6489 41 1 7.6648 1.8496 -4.0074 42 1 6.8487 3.4036 -3.7119 43 1 8.5081 3.3779 -4.3555 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335816078.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:36 Heat of formation + Delta-G solvation = -80.878363 kcal Electronic energy + Delta-G solvation = -28079.048820 eV Core-core repulsion = 24058.240183 eV Total energy + Delta-G solvation = -4020.808637 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.55308 -40.98210 -40.02860 -37.75293 -37.48502 -36.75703 -33.97955 -32.72715 -31.88656 -29.36658 -29.18238 -28.43718 -27.20862 -26.97342 -25.00986 -22.84973 -22.26459 -21.49230 -20.50843 -19.10809 -18.85601 -18.27625 -17.78397 -17.60057 -17.38649 -16.96901 -16.57066 -16.24135 -15.77072 -15.66597 -15.37775 -15.02591 -14.79567 -14.56701 -14.21651 -14.16332 -13.75225 -13.67404 -13.60063 -13.44580 -13.33889 -13.15555 -13.09711 -12.97894 -12.93230 -12.72937 -12.60865 -12.08682 -11.91750 -11.82314 -11.76002 -11.57792 -11.19888 -10.66888 -10.49630 -10.14792 -9.84730 -9.41620 -8.41629 -8.24143 -6.35813 -0.17127 0.55603 1.15731 1.17115 1.45045 1.47230 1.58073 1.69037 1.87877 2.04198 2.25556 2.64587 3.01472 3.10870 3.66555 3.87601 4.16330 4.23913 4.28837 4.32807 4.33238 4.39166 4.41998 4.48356 4.63142 4.66525 4.72201 4.75767 4.82281 4.82759 4.90324 4.96916 5.05396 5.12016 5.24702 5.31616 5.48372 5.54167 5.89084 6.05933 6.13549 6.30269 6.72575 6.98238 7.09825 7.49387 7.95593 8.62440 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012560 B = 0.004095 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.752967 B = 6835.177027 C = 8382.345841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.363 6.363 3 C 0.474 3.526 4 O -0.537 6.537 5 C -0.112 4.112 6 C 0.134 3.866 7 N -0.455 5.455 8 C -0.347 4.347 9 H 0.109 0.891 10 C 0.026 3.974 11 N -0.877 5.877 12 Si 0.953 3.047 13 H -0.256 1.256 14 H -0.278 1.278 15 H -0.237 1.237 16 C 0.554 3.446 17 O -0.619 6.619 18 C -0.360 4.360 19 S 0.230 5.770 20 C 0.238 3.762 21 N -0.582 5.582 22 C 0.098 3.902 23 C 0.083 3.917 24 N -0.583 5.583 25 C 0.172 3.828 26 C -0.076 4.076 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.138 0.862 30 H 0.100 0.900 31 H 0.118 0.882 32 H 0.097 0.903 33 H 0.038 0.962 34 H 0.278 0.722 35 H 0.053 0.947 36 H 0.101 0.899 37 H 0.059 0.941 38 H 0.075 0.925 39 H 0.111 0.889 40 H 0.061 0.939 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.954 -7.450 2.584 11.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.279 6.279 3 C 0.318 3.682 4 O -0.427 6.427 5 C -0.151 4.151 6 C 0.010 3.990 7 N -0.174 5.174 8 C -0.482 4.482 9 H 0.126 0.874 10 C -0.182 4.182 11 N -0.511 5.511 12 Si 0.774 3.226 13 H -0.180 1.180 14 H -0.204 1.204 15 H -0.160 1.160 16 C 0.347 3.653 17 O -0.509 6.509 18 C -0.486 4.486 19 S 0.490 5.510 20 C -0.126 4.126 21 N -0.300 5.300 22 C -0.046 4.046 23 C -0.059 4.059 24 N -0.310 5.310 25 C 0.030 3.970 26 C -0.135 4.135 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.156 0.844 30 H 0.118 0.882 31 H 0.136 0.864 32 H 0.115 0.885 33 H 0.056 0.944 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.119 0.881 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.130 0.870 40 H 0.080 0.920 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.907 -6.940 3.022 11.689 hybrid contribution -0.677 0.514 -0.373 0.928 sum 8.230 -6.425 2.648 10.772 Atomic orbital electron populations 1.23572 0.74828 1.05830 1.02428 1.86506 1.25115 1.32406 1.83881 1.23826 0.92080 0.81246 0.71009 1.90641 1.67841 1.37480 1.46719 1.21657 0.86712 1.00780 1.05964 1.21020 0.82136 0.93027 1.02842 1.43284 1.04637 1.64396 1.05034 1.19503 1.16265 1.21005 0.91410 0.87445 1.26521 0.96046 0.92741 1.02867 1.69861 1.25829 1.20769 1.34653 0.85492 0.79130 0.81208 0.76816 1.17998 1.20356 1.15992 1.16419 0.86097 0.78459 0.84295 1.90572 1.69910 1.57552 1.32838 1.23994 0.98340 1.29420 0.96830 1.84830 0.90049 1.70571 1.05593 1.25801 0.95189 0.95678 0.95919 1.45947 1.00021 1.76226 1.07770 1.21764 0.88061 1.01922 0.92841 1.22094 1.03626 1.03517 0.76683 1.66056 1.17268 1.29166 1.18510 1.20647 0.86278 0.93232 0.96839 1.20493 1.01278 1.03160 0.88594 0.92093 0.92194 0.84436 0.88153 0.86357 0.88479 0.94369 0.91192 0.92883 0.88103 0.92200 0.90630 0.87046 0.92043 0.90281 0.90170 0.90220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.56 113.37 1.20 1.80 16 2 O -0.36 -11.42 10.56 -51.36 -0.54 -11.96 16 3 C 0.47 18.32 7.96 71.24 0.57 18.88 16 4 O -0.54 -23.96 15.73 21.95 0.35 -23.62 16 5 C -0.11 -4.52 6.12 29.85 0.18 -4.34 16 6 C 0.13 6.64 4.41 86.38 0.38 7.02 16 7 N -0.45 -23.02 2.46 -645.32 -1.59 -24.61 16 8 C -0.35 -16.50 6.64 84.07 0.56 -15.94 16 9 H 0.11 4.82 5.49 -15.38 -0.08 4.73 16 10 C 0.03 1.23 5.38 84.93 0.46 1.69 16 11 N -0.88 -45.39 11.18 21.67 0.24 -45.15 16 12 Si 0.95 35.11 29.55 68.60 2.03 37.14 16 13 H -0.26 -8.98 7.11 99.48 0.71 -8.27 16 14 H -0.28 -10.32 7.11 99.48 0.71 -9.62 16 15 H -0.24 -7.86 7.11 99.48 0.71 -7.15 16 16 C 0.55 28.71 7.43 85.13 0.63 29.34 16 17 O -0.62 -34.03 13.65 -4.64 -0.06 -34.10 16 18 C -0.36 -16.75 6.17 22.84 0.14 -16.61 16 19 S 0.23 8.95 16.85 -56.49 -0.95 7.99 16 20 C 0.24 8.47 7.71 179.43 1.38 9.86 16 21 N -0.58 -15.26 3.36 -761.39 -2.56 -17.82 16 22 C 0.10 2.00 10.54 127.77 1.35 3.35 16 23 C 0.08 1.51 10.39 127.77 1.33 2.84 16 24 N -0.58 -23.07 9.71 -188.44 -1.83 -24.90 16 25 C 0.17 7.37 6.83 42.38 0.29 7.66 16 26 C -0.08 -2.92 9.77 71.23 0.70 -2.23 16 27 H 0.06 1.41 8.13 -2.39 -0.02 1.39 16 28 H 0.06 1.40 8.13 -2.39 -0.02 1.38 16 29 H 0.14 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.10 3.91 8.14 -2.39 -0.02 3.89 16 31 H 0.12 4.41 8.14 -2.39 -0.02 4.39 16 32 H 0.10 5.22 5.64 -2.39 -0.01 5.20 16 33 H 0.04 2.07 7.21 -2.39 -0.02 2.05 16 34 H 0.28 13.55 8.31 -92.71 -0.77 12.78 16 35 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.10 1.30 8.07 -2.39 -0.02 1.28 16 37 H 0.06 1.45 7.59 -2.39 -0.02 1.43 16 38 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.11 1.28 8.07 -2.39 -0.02 1.26 16 40 H 0.06 1.29 7.01 -2.39 -0.02 1.27 16 41 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 42 H 0.08 3.45 5.85 -2.39 -0.01 3.44 16 43 H 0.08 2.65 8.14 -2.38 -0.02 2.63 16 Total: -1.00 -69.87 370.78 5.21 -64.66 By element: Atomic # 1 Polarization: 28.04 SS G_CDS: 0.97 Total: 29.02 kcal Atomic # 6 Polarization: 34.18 SS G_CDS: 9.16 Total: 43.33 kcal Atomic # 7 Polarization: -106.74 SS G_CDS: -5.73 Total: -112.47 kcal Atomic # 8 Polarization: -69.41 SS G_CDS: -0.26 Total: -69.67 kcal Atomic # 14 Polarization: 35.11 SS G_CDS: 2.03 Total: 37.14 kcal Atomic # 16 Polarization: 8.95 SS G_CDS: -0.95 Total: 7.99 kcal Total: -69.87 5.21 -64.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335816078.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.220 kcal (2) G-P(sol) polarization free energy of solvation -69.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds