Wall clock time and date at job start Sat Apr 11 2020 06:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29927 * 125.38105 * 2 1 4 4 C 1.36064 * 108.48199 * 179.97438 * 3 2 1 5 5 C 1.47422 * 126.45170 * 179.97438 * 4 3 2 6 6 O 1.21609 * 120.00452 * 173.44185 * 5 4 3 7 7 N 1.34782 * 120.00007 * 353.44505 * 5 4 3 8 8 C 1.46505 * 119.99805 * 3.64250 * 7 5 4 9 9 C 1.46494 * 120.00347 * 183.64426 * 7 5 4 10 10 C 1.52999 * 109.47257 * 89.99553 * 9 7 5 11 11 H 1.09004 * 109.46558 * 65.00480 * 10 9 7 12 12 C 1.52999 * 109.47344 * 185.00044 * 10 9 7 13 13 N 1.46498 * 109.47169 * 305.00566 * 10 9 7 14 14 C 1.34781 * 119.99852 * 155.00223 * 13 10 9 15 15 O 1.21281 * 120.00086 * 359.97438 * 14 13 10 16 16 C 1.50702 * 119.99787 * 179.97438 * 14 13 10 17 17 S 1.80999 * 109.46823 * 179.97438 * 16 14 13 18 18 C 1.76205 * 99.99777 * 180.02562 * 17 16 14 19 19 H 1.08002 * 120.00124 * 359.97438 * 18 17 16 20 20 C 1.38794 * 119.99730 * 180.02562 * 18 17 16 21 21 N 1.31638 * 119.99770 * 179.97438 * 20 18 17 22 22 Si 1.86794 * 120.00410 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.47233 * 90.00233 * 22 20 18 24 24 H 1.48498 * 109.47395 * 210.00273 * 22 20 18 25 25 H 1.48496 * 109.47220 * 330.00522 * 22 20 18 26 26 C 1.36091 * 107.10067 * 359.97438 * 4 3 2 27 27 O 1.34051 * 125.37774 * 179.97438 * 2 1 3 28 28 H 1.09005 * 109.46817 * 90.00533 * 1 2 3 29 29 H 1.08999 * 109.46846 * 209.99772 * 1 2 3 30 30 H 1.08991 * 109.47110 * 329.99984 * 1 2 3 31 31 H 1.08999 * 109.47205 * 84.11428 * 8 7 5 32 32 H 1.09000 * 109.47024 * 204.11592 * 8 7 5 33 33 H 1.09001 * 109.47049 * 324.11828 * 8 7 5 34 34 H 1.08996 * 109.47391 * 210.00097 * 9 7 5 35 35 H 1.09000 * 109.46924 * 330.00115 * 9 7 5 36 36 H 1.08997 * 109.47404 * 180.02562 * 12 10 9 37 37 H 1.08997 * 109.47332 * 300.00508 * 12 10 9 38 38 H 1.09000 * 109.46673 * 59.99965 * 12 10 9 39 39 H 0.97000 * 119.99931 * 334.98890 * 13 10 9 40 40 H 1.08997 * 109.47339 * 299.99811 * 16 14 13 41 41 H 1.09000 * 109.47202 * 59.99747 * 16 14 13 42 42 H 0.97004 * 119.99838 * 179.97438 * 21 20 18 43 43 H 1.08000 * 126.52532 * 180.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0593 0.0000 4 6 3.5612 0.6638 0.0006 5 6 4.7439 1.5438 0.0003 6 8 5.8563 1.0675 0.1211 7 7 4.5925 2.8763 -0.1339 8 6 3.2494 3.4579 -0.1993 9 6 5.7707 3.7431 -0.2145 10 6 6.1885 3.9011 -1.6779 11 1 5.4057 4.4271 -2.2244 12 6 7.4897 4.7025 -1.7531 13 7 6.3947 2.5781 -2.2724 14 6 6.2695 2.4108 -3.6039 15 8 5.9858 3.3553 -4.3098 16 6 6.4822 1.0500 -4.2156 17 16 6.2446 1.1501 -6.0071 18 6 6.5439 -0.5290 -6.4497 19 1 6.7887 -1.2531 -5.6867 20 6 6.4661 -0.9207 -7.7789 21 7 6.6902 -2.1750 -8.1096 22 14 6.0433 0.3318 -9.0986 23 1 7.2918 0.9501 -9.6125 24 1 5.3308 -0.3440 -10.2125 25 1 5.1711 1.3853 -8.5201 26 6 3.5660 -0.6971 0.0015 27 8 2.2831 -1.0930 0.0005 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5138 31 1 2.8688 3.6079 0.8111 32 1 3.2932 4.4162 -0.7170 33 1 2.5869 2.7825 -0.7405 34 1 5.5315 4.7212 0.2027 35 1 6.5891 3.2972 0.3508 36 1 7.7871 4.8155 -2.7956 37 1 7.3362 5.6868 -1.3107 38 1 8.2724 4.1765 -1.2065 39 1 6.6215 1.8227 -1.7078 40 1 7.4953 0.7097 -4.0016 41 1 5.7655 0.3457 -3.7931 42 1 6.6354 -2.4489 -9.0386 43 1 4.4361 -1.3368 0.0025 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337136674.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:39 Heat of formation + Delta-G solvation = -40.386668 kcal Electronic energy + Delta-G solvation = -27705.492284 eV Core-core repulsion = 23686.439499 eV Total energy + Delta-G solvation = -4019.052785 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.73512 -40.34383 -38.99972 -36.44545 -35.44540 -34.41563 -32.54731 -32.40982 -31.48607 -28.67197 -28.28608 -27.68967 -26.51784 -25.58156 -23.78696 -22.13608 -21.56333 -20.23656 -19.92193 -18.00535 -17.76118 -17.24451 -16.91119 -16.58821 -16.36619 -16.16331 -15.17454 -14.93605 -14.88814 -14.58228 -14.22708 -14.03368 -13.80063 -13.56141 -13.43005 -13.31706 -13.06594 -12.94610 -12.82351 -12.77301 -12.72293 -12.20165 -12.05789 -11.90330 -11.53571 -11.23887 -11.21280 -10.98682 -10.76197 -10.55720 -10.34393 -9.83220 -9.43664 -9.32438 -9.00063 -8.96221 -8.75186 -8.46040 -6.87755 -6.26171 -3.97179 0.83716 1.67161 2.28088 2.61168 2.84017 3.00030 3.09074 3.34188 3.39588 3.50955 3.52327 3.74327 4.27041 4.35652 4.49421 4.61858 4.78767 4.89513 4.91282 4.97018 4.99160 5.12292 5.12832 5.14957 5.25355 5.29249 5.37518 5.40222 5.42659 5.51270 5.61395 5.64787 5.83546 5.94282 5.96656 6.09269 6.14567 6.28753 6.72162 6.96691 7.19991 7.74433 7.85851 7.97200 8.45090 8.61516 9.20145 10.83187 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009712 B = 0.003597 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2882.453257 B = 7783.213292 C = 9644.356084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.195 3.805 3 N -0.460 5.460 4 C -0.073 4.073 5 C 0.606 3.394 6 O -0.539 6.539 7 N -0.596 5.596 8 C 0.073 3.927 9 C 0.105 3.895 10 C 0.127 3.873 11 H 0.088 0.912 12 C -0.161 4.161 13 N -0.729 5.729 14 C 0.531 3.469 15 O -0.524 6.524 16 C -0.122 4.122 17 S -0.141 6.141 18 C -0.520 4.520 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.881 5.881 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.236 1.236 26 C 0.021 3.979 27 O -0.194 6.194 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.102 0.898 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.104 0.896 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.406 0.594 40 H 0.096 0.904 41 H 0.092 0.908 42 H 0.270 0.730 43 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.577 8.841 23.013 26.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.013 4.013 3 N -0.191 5.191 4 C -0.192 4.192 5 C 0.395 3.605 6 O -0.417 6.417 7 N -0.327 5.327 8 C -0.069 4.069 9 C -0.018 4.018 10 C 0.021 3.979 11 H 0.106 0.894 12 C -0.220 4.220 13 N -0.387 5.387 14 C 0.317 3.683 15 O -0.399 6.399 16 C -0.273 4.273 17 S 0.085 5.915 18 C -0.668 4.668 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.518 5.518 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.200 1.200 25 H -0.160 1.160 26 C -0.053 4.053 27 O -0.080 6.080 28 H 0.115 0.885 29 H 0.109 0.891 30 H 0.121 0.879 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.122 0.878 34 H 0.113 0.887 35 H 0.111 0.889 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.243 0.757 40 H 0.114 0.886 41 H 0.110 0.890 42 H 0.080 0.920 43 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -10.715 10.643 21.783 26.506 hybrid contribution 0.652 -1.827 0.314 1.965 sum -10.063 8.816 22.097 25.831 Atomic orbital electron populations 1.20338 0.80880 1.05286 1.05207 1.26485 0.96796 0.78462 0.99552 1.70912 1.00681 1.29030 1.18482 1.21613 0.92056 0.92930 1.12641 1.16795 0.86284 0.81527 0.75930 1.90777 1.24678 1.74919 1.51329 1.47546 1.08166 1.05729 1.71214 1.22243 0.82570 0.99745 1.02363 1.21957 0.88398 0.95096 0.96306 1.21314 0.98427 0.85127 0.93055 0.89352 1.22127 0.96973 0.99489 1.03451 1.46228 1.73128 1.11478 1.07860 1.20249 0.75848 0.90451 0.81734 1.90670 1.46395 1.42140 1.60694 1.23259 1.05456 0.96533 1.02022 1.84715 1.92594 1.15973 0.98235 1.22336 1.54926 0.92285 0.97233 0.89445 1.24704 0.93484 0.95220 0.97855 1.69948 1.47369 1.15705 1.18790 0.86734 0.80516 0.82543 0.82055 1.19198 1.19970 1.15965 1.25332 0.84923 0.95596 0.99425 1.84409 1.16719 1.37894 1.68947 0.88452 0.89104 0.87913 0.92555 0.91568 0.87797 0.88662 0.88894 0.91297 0.91717 0.92200 0.75671 0.88593 0.88965 0.91992 0.75191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.27 10.51 36.00 0.38 0.11 16 2 C 0.20 1.79 8.30 -13.08 -0.11 1.69 16 3 N -0.46 -5.01 7.85 -7.66 -0.06 -5.07 16 4 C -0.07 -0.88 6.66 -83.02 -0.55 -1.43 16 5 C 0.61 7.78 6.86 -12.52 -0.09 7.69 16 6 O -0.54 -7.72 14.42 5.27 0.08 -7.65 16 7 N -0.60 -6.53 2.77 -182.85 -0.51 -7.03 16 8 C 0.07 0.68 9.62 59.85 0.58 1.25 16 9 C 0.11 1.00 5.12 -4.05 -0.02 0.98 16 10 C 0.13 1.54 2.88 -67.93 -0.20 1.35 16 11 H 0.09 1.20 7.58 -51.93 -0.39 0.81 16 12 C -0.16 -1.74 9.48 37.16 0.35 -1.39 16 13 N -0.73 -11.08 4.48 -53.80 -0.24 -11.32 16 14 C 0.53 10.32 7.81 -10.98 -0.09 10.24 16 15 O -0.52 -11.73 15.52 5.56 0.09 -11.64 16 16 C -0.12 -2.59 6.16 36.01 0.22 -2.37 16 17 S -0.14 -3.73 18.55 -107.50 -1.99 -5.72 16 18 C -0.52 -15.42 10.04 30.94 0.31 -15.11 16 19 H 0.09 2.71 8.03 -52.49 -0.42 2.29 16 20 C 0.10 2.86 5.50 -17.43 -0.10 2.76 16 21 N -0.88 -27.03 13.97 55.49 0.78 -26.25 16 22 Si 0.86 22.19 27.74 -169.99 -4.71 17.48 16 23 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.24 -6.10 6.74 56.52 0.38 -5.72 16 26 C 0.02 0.23 11.95 29.96 0.36 0.58 16 27 O -0.19 -1.97 10.73 6.51 0.07 -1.90 16 28 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.53 8.03 -51.93 -0.42 0.11 16 33 H 0.10 1.13 5.29 -51.93 -0.27 0.85 16 34 H 0.10 0.63 8.07 -51.93 -0.42 0.21 16 35 H 0.09 0.91 7.37 -51.93 -0.38 0.53 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.41 6.03 5.98 -40.82 -0.24 5.79 16 40 H 0.10 1.93 8.14 -51.92 -0.42 1.51 16 41 H 0.09 1.88 8.14 -51.92 -0.42 1.46 16 42 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16 43 H 0.23 1.87 8.06 -52.49 -0.42 1.45 16 LS Contribution 377.89 15.07 5.69 5.69 Total: -1.00 -37.04 377.89 -5.70 -42.74 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -5.94 Total: 4.32 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: 1.05 Total: 6.35 kcal Atomic # 7 Polarization: -49.64 SS G_CDS: -0.03 Total: -49.67 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: 0.23 Total: -21.19 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.71 Total: 17.48 kcal Atomic # 16 Polarization: -3.73 SS G_CDS: -1.99 Total: -5.72 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -37.04 -5.70 -42.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337136674.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.358 kcal (2) G-P(sol) polarization free energy of solvation -37.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds