Wall clock time and date at job start Sat Apr 11 2020 06:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29927 * 125.38105 * 2 1 4 4 C 1.36064 * 108.48199 * 179.97438 * 3 2 1 5 5 C 1.47422 * 126.45170 * 179.97438 * 4 3 2 6 6 O 1.21609 * 120.00452 * 173.44185 * 5 4 3 7 7 N 1.34782 * 120.00007 * 353.44505 * 5 4 3 8 8 C 1.46505 * 119.99805 * 3.64250 * 7 5 4 9 9 C 1.46494 * 120.00347 * 183.64426 * 7 5 4 10 10 C 1.52999 * 109.47257 * 89.99553 * 9 7 5 11 11 H 1.09004 * 109.46558 * 65.00480 * 10 9 7 12 12 C 1.52999 * 109.47344 * 185.00044 * 10 9 7 13 13 N 1.46498 * 109.47169 * 305.00566 * 10 9 7 14 14 C 1.34781 * 119.99852 * 155.00223 * 13 10 9 15 15 O 1.21281 * 120.00086 * 359.97438 * 14 13 10 16 16 C 1.50702 * 119.99787 * 179.97438 * 14 13 10 17 17 S 1.80999 * 109.46823 * 179.97438 * 16 14 13 18 18 C 1.76205 * 99.99777 * 180.02562 * 17 16 14 19 19 H 1.08002 * 120.00124 * 359.97438 * 18 17 16 20 20 C 1.38794 * 119.99730 * 180.02562 * 18 17 16 21 21 N 1.31638 * 119.99770 * 179.97438 * 20 18 17 22 22 Si 1.86794 * 120.00410 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.47233 * 90.00233 * 22 20 18 24 24 H 1.48498 * 109.47395 * 210.00273 * 22 20 18 25 25 H 1.48496 * 109.47220 * 330.00522 * 22 20 18 26 26 C 1.36091 * 107.10067 * 359.97438 * 4 3 2 27 27 O 1.34051 * 125.37774 * 179.97438 * 2 1 3 28 28 H 1.09005 * 109.46817 * 90.00533 * 1 2 3 29 29 H 1.08999 * 109.46846 * 209.99772 * 1 2 3 30 30 H 1.08991 * 109.47110 * 329.99984 * 1 2 3 31 31 H 1.08999 * 109.47205 * 84.11428 * 8 7 5 32 32 H 1.09000 * 109.47024 * 204.11592 * 8 7 5 33 33 H 1.09001 * 109.47049 * 324.11828 * 8 7 5 34 34 H 1.08996 * 109.47391 * 210.00097 * 9 7 5 35 35 H 1.09000 * 109.46924 * 330.00115 * 9 7 5 36 36 H 1.08997 * 109.47404 * 180.02562 * 12 10 9 37 37 H 1.08997 * 109.47332 * 300.00508 * 12 10 9 38 38 H 1.09000 * 109.46673 * 59.99965 * 12 10 9 39 39 H 0.97000 * 119.99931 * 334.98890 * 13 10 9 40 40 H 1.08997 * 109.47339 * 299.99811 * 16 14 13 41 41 H 1.09000 * 109.47202 * 59.99747 * 16 14 13 42 42 H 0.97004 * 119.99838 * 179.97438 * 21 20 18 43 43 H 1.08000 * 126.52532 * 180.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0593 0.0000 4 6 3.5612 0.6638 0.0006 5 6 4.7439 1.5438 0.0003 6 8 5.8563 1.0675 0.1211 7 7 4.5925 2.8763 -0.1339 8 6 3.2494 3.4579 -0.1993 9 6 5.7707 3.7431 -0.2145 10 6 6.1885 3.9011 -1.6779 11 1 5.4057 4.4271 -2.2244 12 6 7.4897 4.7025 -1.7531 13 7 6.3947 2.5781 -2.2724 14 6 6.2695 2.4108 -3.6039 15 8 5.9858 3.3553 -4.3098 16 6 6.4822 1.0500 -4.2156 17 16 6.2446 1.1501 -6.0071 18 6 6.5439 -0.5290 -6.4497 19 1 6.7887 -1.2531 -5.6867 20 6 6.4661 -0.9207 -7.7789 21 7 6.6902 -2.1750 -8.1096 22 14 6.0433 0.3318 -9.0986 23 1 7.2918 0.9501 -9.6125 24 1 5.3308 -0.3440 -10.2125 25 1 5.1711 1.3853 -8.5201 26 6 3.5660 -0.6971 0.0015 27 8 2.2831 -1.0930 0.0005 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5138 31 1 2.8688 3.6079 0.8111 32 1 3.2932 4.4162 -0.7170 33 1 2.5869 2.7825 -0.7405 34 1 5.5315 4.7212 0.2027 35 1 6.5891 3.2972 0.3508 36 1 7.7871 4.8155 -2.7956 37 1 7.3362 5.6868 -1.3107 38 1 8.2724 4.1765 -1.2065 39 1 6.6215 1.8227 -1.7078 40 1 7.4953 0.7097 -4.0016 41 1 5.7655 0.3457 -3.7931 42 1 6.6354 -2.4489 -9.0386 43 1 4.4361 -1.3368 0.0025 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337136674.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:38 Heat of formation + Delta-G solvation = -68.146649 kcal Electronic energy + Delta-G solvation = -27706.696047 eV Core-core repulsion = 23686.439499 eV Total energy + Delta-G solvation = -4020.256548 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.49524 -41.39240 -40.35023 -37.49134 -36.32794 -35.42434 -34.70644 -33.20778 -32.75195 -30.19940 -28.93243 -28.47576 -27.88832 -27.32538 -24.64192 -23.08214 -22.47454 -21.56124 -20.76690 -19.94362 -18.75156 -18.13636 -17.97232 -17.66601 -17.58331 -17.17721 -17.10115 -16.46891 -16.15626 -15.88547 -15.34282 -15.00848 -14.87981 -14.76733 -14.68281 -14.43676 -14.05020 -13.93840 -13.83000 -13.58682 -13.41408 -13.38211 -13.27202 -13.04711 -13.02455 -12.88456 -12.63471 -12.33197 -12.15996 -11.89053 -11.63546 -11.20692 -11.20020 -11.03085 -10.60770 -10.24697 -10.11187 -9.67640 -9.04508 -8.54483 -6.26474 0.01226 0.90528 0.93379 1.29389 1.43356 1.50097 1.52125 1.57310 1.82155 2.12383 2.20929 2.25732 2.67609 2.82277 2.83438 3.51498 3.68063 3.77285 3.84505 4.04046 4.10443 4.18481 4.34846 4.40633 4.41532 4.43172 4.48806 4.60513 4.66713 4.70272 4.74229 4.77003 4.81576 4.98261 5.09242 5.20303 5.31028 5.43356 5.54977 5.67479 6.07548 6.10718 6.38749 6.43013 6.89879 6.90613 7.13315 8.58321 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009712 B = 0.003597 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2882.453257 B = 7783.213292 C = 9644.356084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.196 3.804 3 N -0.474 5.474 4 C -0.098 4.098 5 C 0.598 3.402 6 O -0.563 6.563 7 N -0.596 5.596 8 C 0.074 3.926 9 C 0.110 3.890 10 C 0.123 3.877 11 H 0.077 0.923 12 C -0.155 4.155 13 N -0.712 5.712 14 C 0.536 3.464 15 O -0.556 6.556 16 C -0.112 4.112 17 S -0.162 6.162 18 C -0.534 4.534 19 H 0.058 0.942 20 C 0.048 3.952 21 N -0.916 5.916 22 Si 0.916 3.084 23 H -0.261 1.261 24 H -0.255 1.255 25 H -0.237 1.237 26 C 0.016 3.984 27 O -0.200 6.200 28 H 0.106 0.894 29 H 0.110 0.890 30 H 0.118 0.882 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.135 0.865 35 H 0.094 0.906 36 H 0.038 0.962 37 H 0.098 0.902 38 H 0.067 0.933 39 H 0.409 0.591 40 H 0.105 0.895 41 H 0.098 0.902 42 H 0.278 0.722 43 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.625 10.563 24.164 28.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.013 4.013 3 N -0.205 5.205 4 C -0.217 4.217 5 C 0.386 3.614 6 O -0.444 6.444 7 N -0.325 5.325 8 C -0.068 4.068 9 C -0.012 4.012 10 C 0.017 3.983 11 H 0.095 0.905 12 C -0.214 4.214 13 N -0.368 5.368 14 C 0.321 3.679 15 O -0.435 6.435 16 C -0.263 4.263 17 S 0.064 5.936 18 C -0.682 4.682 19 H 0.076 0.924 20 C -0.158 4.158 21 N -0.554 5.554 22 Si 0.737 3.263 23 H -0.185 1.185 24 H -0.180 1.180 25 H -0.161 1.161 26 C -0.058 4.058 27 O -0.086 6.086 28 H 0.124 0.876 29 H 0.129 0.871 30 H 0.136 0.864 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.106 0.894 34 H 0.153 0.847 35 H 0.112 0.888 36 H 0.058 0.942 37 H 0.117 0.883 38 H 0.086 0.914 39 H 0.248 0.752 40 H 0.124 0.876 41 H 0.117 0.883 42 H 0.088 0.912 43 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -11.769 12.382 22.978 28.633 hybrid contribution 0.947 -2.392 0.117 2.575 sum -10.822 9.990 23.096 27.392 Atomic orbital electron populations 1.20621 0.77750 1.07011 1.06216 1.27494 0.98308 0.77818 0.97678 1.70922 1.00312 1.29694 1.19582 1.21733 0.92533 0.93468 1.13935 1.17030 0.86231 0.82272 0.75847 1.90747 1.25449 1.75478 1.52680 1.47694 1.09230 1.05365 1.70240 1.22290 0.81508 0.99800 1.03166 1.22075 0.88095 0.96827 0.94249 1.21615 0.99057 0.83245 0.94336 0.90486 1.22074 0.96166 1.01192 1.01955 1.46178 1.71190 1.13181 1.06234 1.19866 0.76026 0.89033 0.82997 1.90657 1.48460 1.42646 1.61701 1.23248 1.06276 0.98454 0.98358 1.84551 1.92752 1.13447 1.02824 1.22460 1.55050 0.93599 0.97049 0.92409 1.25569 0.93192 0.97079 0.99928 1.70023 1.48106 1.17400 1.19864 0.85854 0.80602 0.80164 0.79661 1.18522 1.17951 1.16111 1.25685 0.85596 0.95624 0.98930 1.84430 1.16672 1.38417 1.69076 0.87588 0.87145 0.86385 0.91227 0.90010 0.89377 0.84702 0.88801 0.94239 0.88333 0.91379 0.75246 0.87635 0.88332 0.91249 0.73777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.42 10.51 71.24 0.75 0.33 16 2 C 0.20 3.40 8.30 88.39 0.73 4.14 16 3 N -0.47 -10.01 7.85 -293.05 -2.30 -12.31 16 4 C -0.10 -2.34 6.66 40.41 0.27 -2.07 16 5 C 0.60 14.96 6.86 86.66 0.59 15.56 16 6 O -0.56 -15.93 14.42 -4.06 -0.06 -15.99 16 7 N -0.60 -12.06 2.77 -850.67 -2.36 -14.42 16 8 C 0.07 1.24 9.62 127.77 1.23 2.47 16 9 C 0.11 1.80 5.12 86.38 0.44 2.24 16 10 C 0.12 2.75 2.88 44.99 0.13 2.88 16 11 H 0.08 1.96 7.58 -2.39 -0.02 1.95 16 12 C -0.16 -3.02 9.48 71.98 0.68 -2.33 16 13 N -0.71 -21.02 4.48 -442.53 -1.98 -23.01 16 14 C 0.54 20.66 7.81 87.66 0.68 21.35 16 15 O -0.56 -24.84 15.52 -3.03 -0.05 -24.89 16 16 C -0.11 -4.79 6.16 71.24 0.44 -4.35 16 17 S -0.16 -8.60 18.55 -56.49 -1.05 -9.64 16 18 C -0.53 -32.29 10.04 67.95 0.68 -31.61 16 19 H 0.06 3.72 8.03 -2.91 -0.02 3.69 16 20 C 0.05 2.87 5.50 84.85 0.47 3.34 16 21 N -0.92 -56.76 13.97 21.65 0.30 -56.45 16 22 Si 0.92 45.72 27.74 68.60 1.90 47.62 16 23 H -0.26 -12.67 7.11 99.48 0.71 -11.96 16 24 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 25 H -0.24 -11.83 6.74 99.48 0.67 -11.16 16 26 C 0.02 0.34 11.95 67.32 0.80 1.14 16 27 O -0.20 -3.96 10.73 0.38 0.00 -3.96 16 28 H 0.11 0.63 8.14 -2.38 -0.02 0.61 16 29 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.08 1.09 8.03 -2.39 -0.02 1.08 16 33 H 0.09 1.82 5.29 -2.39 -0.01 1.81 16 34 H 0.14 1.20 8.07 -2.39 -0.02 1.18 16 35 H 0.09 1.60 7.37 -2.39 -0.02 1.58 16 36 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.07 1.21 8.14 -2.39 -0.02 1.20 16 39 H 0.41 11.86 5.98 -92.71 -0.55 11.31 16 40 H 0.11 4.28 8.14 -2.40 -0.02 4.26 16 41 H 0.10 4.06 8.14 -2.40 -0.02 4.04 16 42 H 0.28 15.84 8.31 -92.71 -0.77 15.07 16 43 H 0.25 4.05 8.06 -2.91 -0.02 4.02 16 Total: -1.00 -81.20 377.89 2.77 -78.43 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: 0.45 Total: 21.55 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: 7.91 Total: 13.07 kcal Atomic # 7 Polarization: -99.85 SS G_CDS: -6.34 Total: -106.19 kcal Atomic # 8 Polarization: -44.74 SS G_CDS: -0.10 Total: -44.84 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 1.90 Total: 47.62 kcal Atomic # 16 Polarization: -8.60 SS G_CDS: -1.05 Total: -9.64 kcal Total: -81.20 2.77 -78.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337136674.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.285 kcal (2) G-P(sol) polarization free energy of solvation -81.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds