Wall clock time and date at job start Sat Apr 11 2020 06:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47166 * 2 1 4 4 C 1.52997 * 109.47484 * 119.99910 * 2 1 3 5 5 H 1.09001 * 109.46567 * 56.55447 * 4 2 1 6 6 N 1.46498 * 109.47281 * 176.54790 * 4 2 1 7 7 S 1.65592 * 120.00694 * 265.00378 * 6 4 2 8 8 C 1.81402 * 104.44874 * 64.99740 * 7 6 4 9 9 O 1.42100 * 104.28208 * 181.07250 * 7 6 4 10 10 O 1.42098 * 104.27616 * 308.93158 * 7 6 4 11 11 C 1.50694 * 109.47209 * 296.55577 * 4 2 1 12 12 O 1.21275 * 120.00129 * 253.13944 * 11 4 2 13 13 N 1.34773 * 120.00120 * 73.14252 * 11 4 2 14 14 C 1.39471 * 119.99983 * 183.55130 * 13 11 4 15 15 C 1.38596 * 119.58003 * 175.92327 * 14 13 11 16 16 C 1.40812 * 118.79522 * 179.77797 * 15 14 13 17 17 C 1.41546 * 120.99472 * 180.26035 * 16 15 14 18 18 H 1.08000 * 120.00052 * 207.52716 * 17 16 15 19 19 C 1.40027 * 120.00257 * 27.52260 * 17 16 15 20 20 N 1.30747 * 120.00141 * 10.46124 * 19 17 16 21 21 Si 1.86804 * 120.00260 * 190.46327 * 19 17 16 22 22 H 1.48500 * 109.47127 * 89.99989 * 21 19 17 23 23 H 1.48496 * 109.47160 * 209.99865 * 21 19 17 24 24 H 1.48502 * 109.46938 * 329.99862 * 21 19 17 25 25 C 1.41169 * 118.01012 * 0.48713 * 16 15 14 26 26 C 1.37602 * 119.01145 * 359.75384 * 25 16 15 27 27 N 1.32081 * 121.10662 * 359.97438 * 26 25 16 28 28 H 1.09003 * 109.47240 * 59.52836 * 1 2 3 29 29 H 1.08993 * 109.46888 * 179.52747 * 1 2 3 30 30 H 1.08995 * 109.46832 * 299.52533 * 1 2 3 31 31 H 1.09003 * 109.47167 * 240.00764 * 2 1 3 32 32 H 1.09001 * 109.47377 * 180.02562 * 3 2 1 33 33 H 1.08995 * 109.47075 * 300.00695 * 3 2 1 34 34 H 1.09006 * 109.47130 * 60.00041 * 3 2 1 35 35 H 0.97003 * 119.99377 * 85.00479 * 6 4 2 36 36 H 1.09004 * 109.46793 * 60.00711 * 8 7 6 37 37 H 1.09005 * 109.47252 * 179.97438 * 8 7 6 38 38 H 1.08996 * 109.47754 * 300.00596 * 8 7 6 39 39 H 0.97003 * 120.00174 * 3.55665 * 13 11 4 40 40 H 1.08003 * 120.60140 * 0.02562 * 15 14 13 41 41 H 0.96997 * 120.00217 * 179.97438 * 20 19 17 42 42 H 1.07994 * 120.49548 * 179.77362 * 25 16 15 43 43 H 1.07995 * 119.43976 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.6272 -1.7295 1.2806 6 7 3.5027 -0.7936 1.2083 7 16 4.2485 -2.1440 0.6065 8 6 3.7806 -2.1765 -1.1459 9 8 5.6358 -1.8705 0.7472 10 8 3.6396 -3.2213 1.3050 11 6 1.6087 0.0367 2.4782 12 8 2.4213 0.6743 3.1137 13 7 0.3199 0.0061 2.8710 14 6 -0.0941 0.7664 3.9645 15 6 -1.4362 0.7950 4.3092 16 6 -1.8353 1.5642 5.4190 17 6 -3.1928 1.6223 5.8154 18 1 -3.5679 2.4938 6.3314 19 6 -4.0496 0.5499 5.5386 20 7 -3.5608 -0.5816 5.1024 21 14 -5.8910 0.7359 5.7923 22 1 -6.5152 1.2346 4.5405 23 1 -6.4773 -0.5815 6.1470 24 1 -6.1441 1.7024 6.8909 25 6 -0.8415 2.2797 6.1215 26 6 0.4658 2.1936 5.7010 27 7 0.7998 1.4559 4.6575 28 1 -0.3634 0.5212 -0.8857 29 1 -0.3633 -1.0276 -0.0085 30 1 -0.3633 0.5064 0.8942 31 1 1.8934 -0.5137 -0.8901 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9564 0.8900 35 1 4.0343 -0.0504 1.5338 36 1 4.1320 -1.2666 -1.6326 37 1 4.2335 -3.0435 -1.6269 38 1 2.6958 -2.2385 -1.2313 39 1 -0.3198 -0.5448 2.3933 40 1 -2.1623 0.2342 3.7392 41 1 -4.1543 -1.3246 4.9110 42 1 -1.1034 2.8853 6.9765 43 1 1.2316 2.7377 6.2336 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362085824.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:10 Heat of formation + Delta-G solvation = -68.350938 kcal Electronic energy + Delta-G solvation = -28315.712572 eV Core-core repulsion = 24295.447165 eV Total energy + Delta-G solvation = -4020.265407 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.27406 -38.27517 -37.27205 -36.30773 -36.12214 -34.55588 -33.90237 -32.86933 -30.58546 -29.83159 -28.96656 -27.23543 -26.54067 -26.00263 -22.42248 -22.01284 -20.72619 -19.70074 -19.47654 -18.21380 -17.79616 -17.10479 -16.50368 -16.04889 -15.70089 -15.65575 -15.29551 -14.89381 -14.54434 -14.24977 -14.01681 -13.73787 -13.57628 -13.45449 -13.34723 -12.96494 -12.68510 -12.59939 -12.31000 -12.26824 -12.19615 -12.12547 -12.06715 -11.74045 -11.44350 -11.26310 -11.23239 -11.17961 -11.04994 -10.95071 -10.32073 -10.18056 -9.89711 -9.75718 -9.42511 -9.32749 -8.01343 -7.78726 -7.09790 -6.80403 -4.66564 0.02629 2.41838 2.48154 2.75486 2.99725 3.03000 3.12989 3.35329 3.47315 3.60909 3.82773 3.96884 4.37655 4.46904 4.56568 4.63614 4.70132 4.74203 4.93681 5.02269 5.27291 5.41400 5.48489 5.57657 5.62186 5.70403 5.80262 5.85848 5.95196 6.13140 6.23344 6.51341 6.57576 6.75106 6.87211 6.90217 7.07436 7.32251 7.39950 7.70131 7.87800 8.14263 8.36591 8.63969 8.71050 8.77681 9.61661 10.06542 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.018030 B = 0.002951 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.591940 B = 9485.260609 C = 9934.254094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.110 4.110 3 C -0.150 4.150 4 C 0.130 3.870 5 H 0.113 0.887 6 N -1.098 6.098 7 S 2.615 3.385 8 C -0.677 4.677 9 O -0.956 6.956 10 O -0.954 6.954 11 C 0.506 3.494 12 O -0.469 6.469 13 N -0.654 5.654 14 C 0.333 3.667 15 C -0.236 4.236 16 C 0.144 3.856 17 C -0.456 4.456 18 H 0.081 0.919 19 C 0.076 3.924 20 N -0.795 5.795 21 Si 0.914 3.086 22 H -0.267 1.267 23 H -0.277 1.277 24 H -0.262 1.262 25 C -0.280 4.280 26 C 0.117 3.883 27 N -0.551 5.551 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.427 0.573 36 H 0.131 0.869 37 H 0.128 0.872 38 H 0.130 0.870 39 H 0.409 0.591 40 H 0.130 0.870 41 H 0.282 0.718 42 H 0.102 0.898 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.788 -2.967 -15.430 16.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.131 4.131 3 C -0.208 4.208 4 C 0.018 3.982 5 H 0.131 0.869 6 N -0.858 5.858 7 S 2.706 3.294 8 C -0.826 4.826 9 O -0.947 6.947 10 O -0.944 6.944 11 C 0.288 3.712 12 O -0.338 6.338 13 N -0.302 5.302 14 C 0.109 3.891 15 C -0.262 4.262 16 C 0.135 3.865 17 C -0.487 4.487 18 H 0.099 0.901 19 C -0.142 4.142 20 N -0.421 5.421 21 Si 0.739 3.261 22 H -0.192 1.192 23 H -0.202 1.202 24 H -0.186 1.186 25 C -0.304 4.304 26 C -0.037 4.037 27 N -0.270 5.270 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.265 0.735 36 H 0.150 0.850 37 H 0.147 0.853 38 H 0.149 0.851 39 H 0.246 0.754 40 H 0.148 0.852 41 H 0.093 0.907 42 H 0.121 0.879 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 7.714 -3.551 -14.909 17.158 hybrid contribution -2.285 0.225 -0.293 2.315 sum 5.429 -3.326 -15.202 16.482 Atomic orbital electron populations 1.22166 0.93747 1.02799 1.04093 1.21673 0.97073 0.98020 0.96306 1.21852 1.01417 0.94795 1.02717 1.20883 0.81101 1.01410 0.94806 0.86946 1.55343 1.13297 1.38332 1.78852 1.04735 0.73856 0.73448 0.77365 1.30677 1.12933 1.11678 1.27359 1.93626 1.30869 1.84143 1.86031 1.93636 1.77917 1.53609 1.69230 1.20247 0.82880 0.82576 0.85524 1.90778 1.50523 1.39205 1.53287 1.43645 1.09990 1.45963 1.30584 1.18197 0.89919 0.92823 0.88201 1.21606 0.92600 1.09970 1.02002 1.17576 0.92993 0.87814 0.88097 1.19578 0.93323 1.02681 1.33161 0.90052 1.25935 1.01460 0.94311 0.92491 1.69741 1.37455 1.02043 1.32818 0.86209 0.81454 0.78685 0.79782 1.19245 1.20200 1.18561 1.21951 0.93955 1.10412 1.04080 1.21766 0.94196 0.95221 0.92507 1.67203 1.36124 1.13430 1.10238 0.91425 0.91803 0.90634 0.89943 0.92163 0.92311 0.91633 0.73474 0.85022 0.85296 0.85133 0.75366 0.85211 0.90749 0.87948 0.85875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.53 8.27 37.16 0.31 -1.22 16 2 C -0.11 -0.99 2.89 -90.62 -0.26 -1.26 16 3 C -0.15 -1.56 8.77 37.16 0.33 -1.23 16 4 C 0.13 1.54 2.44 -69.09 -0.17 1.37 16 5 H 0.11 1.14 7.48 -51.93 -0.39 0.75 16 6 N -1.10 -12.34 4.67 -5.89 -0.03 -12.37 16 7 S 2.61 26.31 6.08 -107.50 -0.65 25.65 16 8 C -0.68 -3.47 9.96 101.05 1.01 -2.47 16 9 O -0.96 -12.82 18.08 -57.54 -1.04 -13.86 16 10 O -0.95 -13.22 17.39 -57.54 -1.00 -14.22 16 11 C 0.51 8.71 5.42 -10.99 -0.06 8.65 16 12 O -0.47 -9.89 14.21 5.56 0.08 -9.81 16 13 N -0.65 -11.87 4.04 -11.49 -0.05 -11.92 16 14 C 0.33 7.69 7.42 -154.71 -1.15 6.54 16 15 C -0.24 -5.74 8.59 -38.48 -0.33 -6.07 16 16 C 0.14 3.66 5.59 -106.55 -0.60 3.06 16 17 C -0.46 -11.41 9.13 -37.65 -0.34 -11.76 16 18 H 0.08 1.96 7.87 -52.49 -0.41 1.54 16 19 C 0.08 1.79 5.29 -17.34 -0.09 1.70 16 20 N -0.79 -19.05 10.81 55.55 0.60 -18.45 16 21 Si 0.91 17.54 29.57 -169.99 -5.03 12.51 16 22 H -0.27 -5.04 7.11 56.52 0.40 -4.63 16 23 H -0.28 -5.23 7.11 56.52 0.40 -4.83 16 24 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 25 C -0.28 -6.71 9.90 -38.70 -0.38 -7.09 16 26 C 0.12 2.74 11.15 -17.68 -0.20 2.55 16 27 N -0.55 -13.51 7.84 -12.52 -0.10 -13.61 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.87 5.47 -51.93 -0.28 0.59 16 31 H 0.08 0.48 5.74 -51.93 -0.30 0.19 16 32 H 0.06 0.57 7.57 -51.93 -0.39 0.18 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.90 7.11 -51.93 -0.37 0.53 16 35 H 0.43 5.09 7.88 -34.46 -0.27 4.82 16 36 H 0.13 0.48 8.14 -51.92 -0.42 0.06 16 37 H 0.13 0.48 8.14 -51.92 -0.42 0.05 16 38 H 0.13 0.49 6.84 -51.93 -0.36 0.14 16 39 H 0.41 6.10 6.96 -40.82 -0.28 5.81 16 40 H 0.13 3.11 6.23 -52.48 -0.33 2.79 16 41 H 0.28 6.12 8.29 -40.82 -0.34 5.78 16 42 H 0.10 2.26 8.06 -52.49 -0.42 1.83 16 43 H 0.12 2.53 8.06 -52.49 -0.42 2.10 16 LS Contribution 363.11 15.07 5.47 5.47 Total: -1.00 -35.33 363.11 -9.16 -44.49 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: -5.48 Total: 13.32 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: -1.94 Total: -7.21 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: 0.43 Total: -56.34 kcal Atomic # 8 Polarization: -35.93 SS G_CDS: -1.96 Total: -37.90 kcal Atomic # 14 Polarization: 17.54 SS G_CDS: -5.03 Total: 12.51 kcal Atomic # 16 Polarization: 26.31 SS G_CDS: -0.65 Total: 25.65 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.33 -9.16 -44.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362085824.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.865 kcal (2) G-P(sol) polarization free energy of solvation -35.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds