Wall clock time and date at job start Sat Apr 11 2020 06:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47285 * 2 1 4 4 H 1.09001 * 109.47225 * 305.73699 * 3 2 1 5 5 C 1.50702 * 109.47140 * 185.73738 * 3 2 1 6 6 H 1.08002 * 119.99930 * 245.43235 * 5 3 2 7 7 C 1.37875 * 119.99974 * 65.43680 * 5 3 2 8 8 N 1.31515 * 120.00222 * 355.21695 * 7 5 3 9 9 Si 1.86806 * 119.99904 * 175.21461 * 7 5 3 10 10 H 1.48500 * 109.46712 * 95.00080 * 9 7 5 11 11 H 1.48495 * 109.47076 * 215.00150 * 9 7 5 12 12 H 1.48499 * 109.46857 * 335.00173 * 9 7 5 13 13 N 1.46501 * 109.46905 * 65.73694 * 3 2 1 14 14 C 1.34776 * 120.00191 * 275.27478 * 13 3 2 15 15 O 1.21633 * 119.99869 * 354.67053 * 14 13 3 16 16 C 1.47160 * 120.00082 * 174.67257 * 14 13 3 17 17 C 1.38029 * 127.03711 * 269.76522 * 16 14 13 18 18 C 1.39146 * 106.08628 * 179.90328 * 17 16 14 19 19 N 1.31312 * 107.35970 * 0.08465 * 18 17 16 20 20 N 1.28426 * 111.03484 * 359.67727 * 19 18 17 21 21 C 1.46492 * 125.20337 * 180.28092 * 20 19 18 22 22 C 1.50579 * 127.33239 * 180.16522 * 18 17 16 23 23 C 1.52802 * 110.65867 * 340.65274 * 22 18 17 24 24 S 1.81730 * 109.19970 * 53.28418 * 23 22 18 25 25 O 1.42106 * 108.71251 * 47.46771 * 24 23 22 26 26 O 1.42095 * 108.71558 * 178.85505 * 24 23 22 27 27 C 1.50637 * 126.74674 * 359.75690 * 17 16 14 28 28 H 1.09004 * 109.46776 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46746 * 299.99681 * 1 2 3 30 30 H 1.08993 * 109.46843 * 59.99924 * 1 2 3 31 31 H 1.09001 * 109.47205 * 240.00113 * 2 1 3 32 32 H 1.09000 * 109.47457 * 120.00288 * 2 1 3 33 33 H 0.96998 * 119.99812 * 179.97438 * 8 7 5 34 34 H 0.97006 * 120.00006 * 95.00625 * 13 3 2 35 35 H 1.08996 * 109.47430 * 275.15576 * 21 20 19 36 36 H 1.09004 * 109.47352 * 35.16209 * 21 20 19 37 37 H 1.09004 * 109.47062 * 155.15827 * 21 20 19 38 38 H 1.08997 * 109.24103 * 100.96062 * 22 18 17 39 39 H 1.09003 * 109.24037 * 220.34940 * 22 18 17 40 40 H 1.08997 * 109.51460 * 173.20894 * 23 22 18 41 41 H 1.08999 * 109.51310 * 293.36695 * 23 22 18 42 42 H 1.08995 * 109.68476 * 281.88695 * 27 17 16 43 43 H 1.09005 * 109.67940 * 42.44383 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5953 1.9851 -0.8342 5 6 3.5403 1.4448 -0.1420 6 1 4.1587 1.8059 0.6664 7 6 4.1235 0.9860 -1.3041 8 7 3.3777 0.4594 -2.2507 9 14 5.9730 1.1123 -1.5340 10 1 6.6107 -0.1660 -1.1283 11 1 6.2768 1.3859 -2.9616 12 1 6.5017 2.2175 -0.6948 13 7 1.6677 2.0920 1.2592 14 6 0.4499 2.6536 1.3935 15 8 -0.3036 2.7072 0.4401 16 6 0.0317 3.2019 2.6935 17 6 -0.6296 2.5333 3.7040 18 6 -0.8049 3.4587 4.7282 19 7 -0.2765 4.5919 4.3271 20 7 0.2239 4.4761 3.1500 21 6 0.8948 5.5466 2.4085 22 6 -1.4704 3.2319 6.0598 23 6 -2.3660 1.9948 6.0110 24 16 -1.3987 0.5801 5.4062 25 8 -0.1658 0.5359 6.1115 26 8 -2.2336 -0.5696 5.3903 27 6 -1.0725 1.0936 3.6926 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.7879 0.1370 -3.0684 34 1 2.2962 2.1146 1.9978 35 1 0.1509 6.1487 1.8868 36 1 1.4502 6.1769 3.1031 37 1 1.5826 5.1108 1.6838 38 1 -0.7061 3.0921 6.8242 39 1 -2.0748 4.1031 6.3123 40 1 -2.7422 1.7780 7.0108 41 1 -3.2034 2.1778 5.3378 42 1 -1.9819 0.9939 3.1001 43 1 -0.2859 0.4709 3.2663 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362487397.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:13 Heat of formation + Delta-G solvation = -29.366405 kcal Electronic energy + Delta-G solvation = -28834.304936 eV Core-core repulsion = 24815.730026 eV Total energy + Delta-G solvation = -4018.574911 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.77713 -39.03993 -37.22134 -36.15393 -35.73493 -35.25485 -32.91148 -32.49359 -31.97352 -31.07309 -28.67661 -27.11744 -26.78768 -24.00466 -23.62195 -22.43037 -20.70988 -20.09481 -19.53023 -18.72917 -17.97765 -16.95678 -16.73456 -16.38242 -16.12762 -15.94905 -15.52313 -15.20624 -14.76632 -14.66746 -14.38800 -13.85797 -13.66752 -13.56429 -13.24679 -13.08569 -12.83562 -12.72599 -12.65826 -12.24389 -12.21483 -12.15333 -11.98785 -11.69662 -11.36691 -11.20751 -11.09807 -11.01806 -10.92661 -10.45999 -10.41575 -10.34780 -9.84007 -9.52279 -9.20080 -9.05253 -8.89805 -8.68850 -8.09385 -6.24732 -4.34291 -0.16628 1.58749 2.13380 2.27336 2.46623 3.01575 3.17810 3.25626 3.27113 3.48350 3.67915 3.72631 4.16038 4.26431 4.29356 4.41681 4.72531 4.76885 4.88534 4.94568 4.98327 5.07874 5.11128 5.20722 5.29659 5.42135 5.46986 5.60884 5.69144 6.23845 6.24462 6.27642 6.47071 6.56945 6.85901 7.01149 7.10677 7.20993 7.43330 7.56180 7.70900 7.86852 7.98959 8.36938 8.57615 8.80495 9.33109 10.81350 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014270 B = 0.003699 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.666921 B = 7567.478550 C = 8431.198930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.128 4.128 3 C 0.268 3.732 4 H 0.056 0.944 5 C -0.539 4.539 6 H 0.062 0.938 7 C 0.070 3.930 8 N -0.879 5.879 9 Si 0.901 3.099 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.273 1.273 13 N -0.689 5.689 14 C 0.572 3.428 15 O -0.525 6.525 16 C 0.017 3.983 17 C -0.162 4.162 18 C 0.017 3.983 19 N -0.273 5.273 20 N -0.266 5.266 21 C 0.085 3.915 22 C -0.016 4.016 23 C -0.601 4.601 24 S 2.425 3.575 25 O -0.926 6.926 26 O -0.938 6.938 27 C -0.524 4.524 28 H 0.029 0.971 29 H 0.036 0.964 30 H 0.051 0.949 31 H 0.098 0.902 32 H 0.035 0.965 33 H 0.266 0.734 34 H 0.393 0.607 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.142 0.858 41 H 0.137 0.863 42 H 0.145 0.855 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.948 6.605 14.186 18.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.167 4.167 3 C 0.167 3.833 4 H 0.074 0.926 5 C -0.577 4.577 6 H 0.080 0.920 7 C -0.134 4.134 8 N -0.516 5.516 9 Si 0.729 3.271 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.337 5.337 14 C 0.352 3.648 15 O -0.401 6.401 16 C -0.114 4.114 17 C -0.174 4.174 18 C -0.141 4.141 19 N -0.105 5.105 20 N -0.052 5.052 21 C -0.055 4.055 22 C -0.055 4.055 23 C -0.730 4.730 24 S 2.607 3.393 25 O -0.923 6.923 26 O -0.935 6.935 27 C -0.653 4.653 28 H 0.049 0.951 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.117 0.883 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.226 0.774 35 H 0.107 0.893 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.161 0.839 41 H 0.156 0.844 42 H 0.163 0.837 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -8.920 6.990 13.938 17.964 hybrid contribution 0.850 -0.004 -0.709 1.107 sum -8.070 6.986 13.229 16.999 Atomic orbital electron populations 1.21903 0.98425 0.98738 1.01131 1.21966 0.92597 0.99607 1.02489 1.18968 0.94869 0.89313 0.80107 0.92597 1.21155 0.90303 1.44398 1.01830 0.91953 1.24871 0.98664 0.94385 0.95526 1.69908 1.35505 1.38848 1.07339 0.86434 0.84584 0.78509 0.77601 1.20509 1.20968 1.19797 1.46650 1.13010 1.54943 1.19106 1.16958 0.83432 0.79722 0.84693 1.90843 1.52921 1.58206 1.38158 1.21800 1.05549 0.86528 0.97489 1.18943 1.08978 0.94291 0.95148 1.21602 1.04787 0.90212 0.97463 1.73128 1.14866 1.24605 0.97871 1.45553 1.40179 1.08784 1.10706 1.22293 0.98060 0.88574 0.96537 1.19292 0.97507 0.97043 0.91706 1.30080 1.13250 1.16071 1.13630 1.07865 0.76481 0.76803 0.78198 1.93603 1.42400 1.86302 1.70014 1.93609 1.68987 1.44734 1.86187 1.28700 1.11656 0.99907 1.25029 0.95139 0.94464 0.92946 0.88331 0.94581 0.92404 0.77395 0.89287 0.88143 0.88044 0.87970 0.88043 0.83940 0.84442 0.83749 0.83682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.59 37.16 0.32 -2.67 16 2 C -0.13 -2.90 5.49 -26.73 -0.15 -3.05 16 3 C 0.27 6.27 2.18 -69.08 -0.15 6.12 16 4 H 0.06 1.51 7.51 -51.93 -0.39 1.12 16 5 C -0.54 -13.36 8.67 -34.44 -0.30 -13.66 16 6 H 0.06 1.49 7.72 -52.49 -0.41 1.08 16 7 C 0.07 1.78 5.35 -17.82 -0.10 1.68 16 8 N -0.88 -23.49 11.52 55.43 0.64 -22.86 16 9 Si 0.90 19.78 29.54 -169.99 -5.02 14.76 16 10 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 12 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 13 N -0.69 -13.32 5.03 -56.09 -0.28 -13.60 16 14 C 0.57 10.68 5.22 -12.64 -0.07 10.61 16 15 O -0.53 -11.50 14.65 5.25 0.08 -11.42 16 16 C 0.02 0.27 6.72 -82.15 -0.55 -0.28 16 17 C -0.16 -2.28 5.96 -104.39 -0.62 -2.90 16 18 C 0.02 0.22 6.91 -82.54 -0.57 -0.35 16 19 N -0.27 -3.73 11.91 33.57 0.40 -3.33 16 20 N -0.27 -3.70 3.75 -63.96 -0.24 -3.94 16 21 C 0.09 0.89 11.22 59.84 0.67 1.56 16 22 C -0.02 -0.14 5.87 -28.04 -0.16 -0.30 16 23 C -0.60 -4.23 6.33 37.06 0.23 -3.99 16 24 S 2.43 25.99 5.34 -107.50 -0.57 25.42 16 25 O -0.93 -12.89 17.83 -57.81 -1.03 -13.92 16 26 O -0.94 -12.58 18.11 -57.81 -1.05 -13.63 16 27 C -0.52 -6.33 6.50 35.98 0.23 -6.10 16 28 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.04 0.72 5.64 -51.93 -0.29 0.43 16 30 H 0.05 1.16 7.95 -51.93 -0.41 0.74 16 31 H 0.10 2.49 6.22 -51.93 -0.32 2.17 16 32 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 34 H 0.39 6.84 8.51 -40.82 -0.35 6.50 16 35 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.10 1.11 7.66 -51.93 -0.40 0.71 16 38 H 0.10 0.81 8.12 -51.93 -0.42 0.39 16 39 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.14 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.14 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.14 1.49 8.14 -51.93 -0.42 1.07 16 43 H 0.15 1.84 8.06 -51.93 -0.42 1.42 16 LS Contribution 364.86 15.07 5.50 5.50 Total: -1.00 -34.59 364.86 -8.71 -43.30 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -5.93 Total: 7.04 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: -1.21 Total: -13.33 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: 0.52 Total: -43.73 kcal Atomic # 8 Polarization: -36.97 SS G_CDS: -2.00 Total: -38.97 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Atomic # 16 Polarization: 25.99 SS G_CDS: -0.57 Total: 25.42 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.59 -8.71 -43.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362487397.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.938 kcal (2) G-P(sol) polarization free energy of solvation -34.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds