Wall clock time and date at job start Sat Apr 11 2020 06:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47391 * 2 1 4 4 C 1.50701 * 109.47006 * 239.99870 * 2 1 3 5 5 H 1.08007 * 119.99763 * 237.69367 * 4 2 1 6 6 C 1.37872 * 120.00117 * 57.69915 * 4 2 1 7 7 N 1.31515 * 119.99919 * 6.57562 * 6 4 2 8 8 Si 1.86799 * 120.00024 * 186.58238 * 6 4 2 9 9 H 1.48503 * 109.47291 * 84.99245 * 8 6 4 10 10 H 1.48499 * 109.47062 * 204.99568 * 8 6 4 11 11 H 1.48507 * 109.46955 * 324.99277 * 8 6 4 12 12 C 1.53007 * 109.46751 * 119.99962 * 2 1 3 13 13 S 1.81400 * 109.47060 * 299.99667 * 12 2 1 14 14 O 1.42101 * 110.54156 * 68.38166 * 13 12 2 15 15 O 1.42094 * 110.54249 * 291.62520 * 13 12 2 16 16 N 1.65601 * 104.44608 * 179.97438 * 13 12 2 17 17 C 1.47132 * 121.30352 * 270.02469 * 16 13 12 18 18 C 1.52874 * 108.04005 * 115.96282 * 17 16 13 19 19 C 1.50296 * 110.71187 * 47.06711 * 18 17 16 20 20 C 1.39894 * 118.56635 * 160.20744 * 19 18 17 21 21 O 1.35517 * 120.40031 * 359.51079 * 20 19 18 22 22 N 1.32630 * 119.19238 * 179.53899 * 20 19 18 23 23 C 1.31803 * 120.58762 * 359.90116 * 22 20 19 24 24 N 1.31600 * 121.67276 * 0.27088 * 23 22 20 25 25 C 1.33009 * 121.18780 * 0.05531 * 24 23 22 26 26 C 1.46769 * 121.27945 * 90.00236 * 16 13 12 27 27 H 1.08998 * 109.47359 * 306.67191 * 1 2 3 28 28 H 1.09001 * 109.46937 * 66.66694 * 1 2 3 29 29 H 1.09003 * 109.47527 * 186.67006 * 1 2 3 30 30 H 1.09000 * 109.47299 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47183 * 300.00175 * 3 2 1 32 32 H 1.09001 * 109.47096 * 59.99840 * 3 2 1 33 33 H 0.97004 * 119.99720 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.46572 * 179.97438 * 12 2 1 35 35 H 1.09005 * 109.47151 * 60.00326 * 12 2 1 36 36 H 1.09002 * 109.70096 * 356.33785 * 17 16 13 37 37 H 1.09000 * 109.75691 * 235.61752 * 17 16 13 38 38 H 1.08998 * 109.22356 * 286.75776 * 18 17 16 39 39 H 1.08998 * 109.22189 * 167.36808 * 18 17 16 40 40 H 0.96697 * 113.99720 * 90.00735 * 21 20 19 41 41 H 1.07999 * 119.16322 * 180.25979 * 23 22 20 42 42 H 1.09002 * 109.45764 * 104.40997 * 26 16 13 43 43 H 1.08995 * 109.46211 * 344.44902 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6836 -1.5664 -1.1317 6 6 1.6605 -0.2678 -2.4821 7 7 0.9755 0.8478 -2.6085 8 14 2.1296 -1.2526 -3.9986 9 1 1.1191 -2.3158 -4.2305 10 1 2.1799 -0.3515 -5.1779 11 1 3.4630 -1.8733 -3.7927 12 6 2.0399 -0.7213 1.2493 13 16 1.4353 0.1339 2.7304 14 8 0.0279 -0.0183 2.8544 15 8 2.0480 1.4100 2.8544 16 7 2.0528 -0.7408 3.9936 17 6 1.3114 -1.8703 4.5761 18 6 2.1214 -3.1439 4.3334 19 6 3.5647 -2.9330 4.6956 20 6 4.3629 -4.0547 4.9442 21 8 3.8367 -5.3012 4.8681 22 7 5.6406 -3.8833 5.2558 23 6 6.1564 -2.6726 5.3295 24 7 5.4312 -1.5977 5.1046 25 6 4.1414 -1.6898 4.7932 26 6 3.3615 -0.4196 4.5753 27 1 -0.3634 0.6137 0.8242 28 1 -0.3633 0.4070 -0.9436 29 1 -0.3634 -1.0207 0.1194 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 0.7137 1.1590 -3.4891 34 1 3.1299 -0.7217 1.2491 35 1 1.6766 -1.7490 1.2493 36 1 0.3365 -1.9565 4.0962 37 1 1.1830 -1.7137 5.6471 38 1 2.0519 -3.4183 3.2808 39 1 1.7129 -3.9505 4.9422 40 1 3.8976 -5.7008 3.9896 41 1 7.2006 -2.5599 5.5810 42 1 3.2200 0.0878 5.5296 43 1 3.9109 0.2318 3.8958 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364869087.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:39 Heat of formation + Delta-G solvation = -55.570852 kcal Electronic energy + Delta-G solvation = -29016.826105 eV Core-core repulsion = 24997.114885 eV Total energy + Delta-G solvation = -4019.711221 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.69564 -38.11251 -37.65168 -36.75146 -36.35458 -35.43543 -33.48094 -32.64870 -31.73325 -30.48331 -26.89456 -26.25956 -25.79180 -25.28733 -24.98103 -23.34349 -21.60808 -19.53164 -19.18517 -18.72047 -18.08377 -17.35147 -16.93130 -16.10888 -15.98535 -15.64541 -15.28903 -14.91567 -14.73828 -14.72420 -14.43293 -14.00826 -13.56235 -13.28659 -13.16739 -12.98127 -12.67209 -12.59187 -12.42737 -12.21073 -12.04906 -11.57238 -11.44323 -11.23359 -11.09625 -11.02218 -10.80066 -10.74666 -10.59552 -10.46780 -10.38447 -10.17419 -9.86559 -9.73363 -9.56585 -9.44430 -9.11716 -8.75844 -8.43948 -6.10048 -4.21866 0.52115 0.61143 0.67300 2.81453 2.99618 3.21493 3.29047 3.30007 3.38932 3.69228 4.00675 4.22200 4.31406 4.34222 4.41706 4.51949 4.71196 4.87156 4.90224 5.05123 5.14778 5.24109 5.32602 5.45209 5.53748 5.55856 5.62952 5.70195 5.88712 5.97831 6.28387 6.34662 6.60835 6.62543 6.71077 6.83076 6.96581 7.00229 7.23955 7.41463 7.61462 7.75707 7.91109 8.02937 8.26809 8.76171 9.43627 10.91066 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013211 B = 0.003938 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.976655 B = 7108.189218 C = 8028.829759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.082 3.918 3 C -0.164 4.164 4 C -0.503 4.503 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.881 5.881 8 Si 0.895 3.105 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.276 1.276 12 C -0.580 4.580 13 S 2.593 3.407 14 O -0.955 6.955 15 O -0.955 6.955 16 N -1.012 6.012 17 C 0.118 3.882 18 C -0.093 4.093 19 C -0.182 4.182 20 C 0.361 3.639 21 O -0.474 6.474 22 N -0.542 5.542 23 C 0.317 3.683 24 N -0.519 5.519 25 C 0.179 3.821 26 C 0.175 3.825 27 H 0.026 0.974 28 H 0.094 0.906 29 H 0.035 0.965 30 H 0.036 0.964 31 H 0.098 0.902 32 H 0.026 0.974 33 H 0.263 0.737 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.109 0.891 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.409 0.591 41 H 0.203 0.797 42 H 0.100 0.900 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.676 -8.285 14.559 17.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.080 3.920 3 C -0.222 4.222 4 C -0.543 4.543 5 H 0.076 0.924 6 C -0.136 4.136 7 N -0.519 5.519 8 Si 0.722 3.278 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.201 1.201 12 C -0.714 4.714 13 S 2.693 3.307 14 O -0.945 6.945 15 O -0.946 6.946 16 N -0.846 5.846 17 C -0.008 4.008 18 C -0.132 4.132 19 C -0.188 4.188 20 C 0.172 3.828 21 O -0.282 6.282 22 N -0.266 5.266 23 C 0.028 3.972 24 N -0.235 5.235 25 C 0.035 3.965 26 C 0.048 3.952 27 H 0.045 0.955 28 H 0.113 0.887 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.117 0.883 32 H 0.045 0.955 33 H 0.074 0.926 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.127 0.873 37 H 0.097 0.903 38 H 0.108 0.892 39 H 0.117 0.883 40 H 0.269 0.731 41 H 0.220 0.780 42 H 0.118 0.882 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 4.792 -7.227 15.355 17.634 hybrid contribution 0.137 -1.556 -1.757 2.351 sum 4.928 -8.783 13.598 16.921 Atomic orbital electron populations 1.22209 0.96881 0.99640 1.03075 1.17948 0.92771 0.92330 0.88982 1.22314 0.99767 0.97695 1.02422 1.20897 1.30171 1.13820 0.89365 0.92401 1.24926 0.95030 0.94796 0.98871 1.69806 1.38375 1.20095 1.23624 0.86570 0.78838 0.79991 0.82355 1.20505 1.21116 1.20069 1.30591 1.11209 1.12730 1.16845 1.05870 0.74751 0.75015 0.75099 1.93549 1.28931 1.86441 1.85600 1.93555 1.78067 1.37420 1.85527 1.58303 1.27800 1.47597 1.50916 1.21440 0.95347 0.83672 1.00300 1.20738 0.89560 0.99651 1.03290 1.21121 0.99589 0.93432 1.04663 1.19437 0.87111 0.85414 0.90820 1.84664 1.79006 1.26898 1.37610 1.67941 1.13415 1.28568 1.16721 1.24745 1.00279 0.81246 0.90901 1.68299 1.06151 1.34764 1.14310 1.21552 0.90067 0.94754 0.90169 1.19956 0.81916 0.91481 1.01856 0.95523 0.88690 0.94567 0.94474 0.88327 0.95498 0.92638 0.86567 0.86455 0.87331 0.90329 0.89238 0.88333 0.73079 0.78027 0.88184 0.86406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.78 7.58 37.16 0.28 -3.50 16 2 C 0.08 1.91 0.52 -155.66 -0.08 1.83 16 3 C -0.16 -3.94 7.79 37.15 0.29 -3.65 16 4 C -0.50 -12.81 8.01 -34.44 -0.28 -13.08 16 5 H 0.06 1.44 7.75 -52.48 -0.41 1.03 16 6 C 0.07 1.71 5.09 -17.82 -0.09 1.62 16 7 N -0.88 -23.49 9.39 55.43 0.52 -22.97 16 8 Si 0.89 20.16 29.54 -169.99 -5.02 15.14 16 9 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 10 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 12 C -0.58 -10.72 5.12 37.16 0.19 -10.53 16 13 S 2.59 45.25 4.47 -107.50 -0.48 44.77 16 14 O -0.95 -18.49 14.44 -57.54 -0.83 -19.33 16 15 O -0.96 -18.96 14.55 -57.54 -0.84 -19.79 16 16 N -1.01 -13.22 3.19 -115.09 -0.37 -13.59 16 17 C 0.12 1.23 6.41 -3.76 -0.02 1.21 16 18 C -0.09 -0.84 5.58 -28.14 -0.16 -1.00 16 19 C -0.18 -1.98 5.77 -104.51 -0.60 -2.58 16 20 C 0.36 3.92 7.79 -16.59 -0.13 3.79 16 21 O -0.47 -4.11 12.70 -18.24 -0.23 -4.34 16 22 N -0.54 -6.25 10.47 -14.58 -0.15 -6.40 16 23 C 0.32 3.30 12.29 -92.31 -1.13 2.16 16 24 N -0.52 -6.15 10.32 -11.01 -0.11 -6.26 16 25 C 0.18 2.13 6.70 -82.42 -0.55 1.57 16 26 C 0.17 2.10 6.30 -5.08 -0.03 2.07 16 27 H 0.03 0.59 5.96 -51.93 -0.31 0.28 16 28 H 0.09 2.43 5.99 -51.93 -0.31 2.12 16 29 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.10 2.56 6.01 -51.93 -0.31 2.25 16 32 H 0.03 0.61 5.46 -51.93 -0.28 0.32 16 33 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 34 H 0.12 2.00 8.14 -51.92 -0.42 1.58 16 35 H 0.12 1.92 8.14 -51.92 -0.42 1.50 16 36 H 0.11 1.13 6.98 -51.93 -0.36 0.77 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.10 0.73 7.76 -51.93 -0.40 0.33 16 40 H 0.41 1.71 9.06 45.56 0.41 2.12 16 41 H 0.20 1.36 8.06 -52.49 -0.42 0.94 16 42 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 43 H 0.12 1.47 7.40 -51.93 -0.38 1.08 16 LS Contribution 351.08 15.07 5.29 5.29 Total: -1.00 -33.05 351.08 -9.42 -42.47 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -4.88 Total: 5.11 kcal Atomic # 6 Polarization: -17.78 SS G_CDS: -2.32 Total: -20.09 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: -0.11 Total: -49.22 kcal Atomic # 8 Polarization: -41.56 SS G_CDS: -1.90 Total: -43.46 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Atomic # 16 Polarization: 45.25 SS G_CDS: -0.48 Total: 44.77 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.05 -9.42 -42.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364869087.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.103 kcal (2) G-P(sol) polarization free energy of solvation -33.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds