Wall clock time and date at job start Sat Apr 11 2020 06:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47060 * 2 1 4 4 C 1.50692 * 109.47430 * 239.99313 * 2 1 3 5 5 H 1.08007 * 120.00191 * 240.83666 * 4 2 1 6 6 C 1.37877 * 120.00299 * 60.84052 * 4 2 1 7 7 N 1.31515 * 119.99952 * 194.57920 * 6 4 2 8 8 Si 1.86804 * 119.99783 * 14.57181 * 6 4 2 9 9 H 1.48504 * 109.46597 * 84.45671 * 8 6 4 10 10 H 1.48494 * 109.47306 * 204.45674 * 8 6 4 11 11 H 1.48494 * 109.47000 * 324.46067 * 8 6 4 12 12 C 1.53005 * 109.46917 * 119.99188 * 2 1 3 13 13 S 1.81400 * 109.47139 * 300.00386 * 12 2 1 14 14 O 1.42107 * 110.54522 * 68.37387 * 13 12 2 15 15 O 1.42102 * 110.54365 * 291.62352 * 13 12 2 16 16 N 1.65604 * 104.44995 * 179.97438 * 13 12 2 17 17 C 1.46505 * 119.99487 * 64.99978 * 16 13 12 18 18 H 1.08998 * 109.47272 * 335.00157 * 17 16 13 19 19 C 1.50704 * 109.46730 * 94.99956 * 17 16 13 20 20 N 1.34778 * 119.99640 * 179.97438 * 19 17 16 21 21 O 1.21276 * 120.00221 * 359.97438 * 19 17 16 22 22 C 1.50700 * 109.46819 * 214.99610 * 17 16 13 23 23 C 1.38233 * 119.61254 * 155.02253 * 22 17 16 24 24 C 1.38625 * 119.15638 * 179.74951 * 23 22 17 25 25 C 1.38673 * 118.42298 * 0.47096 * 24 23 22 26 26 C 1.38182 * 119.16313 * 359.51095 * 25 24 23 27 27 N 1.31848 * 119.61992 * 335.00299 * 22 17 16 28 28 H 1.09001 * 109.47533 * 310.23881 * 1 2 3 29 29 H 1.09005 * 109.46867 * 70.23993 * 1 2 3 30 30 H 1.09000 * 109.47059 * 190.23293 * 1 2 3 31 31 H 1.08998 * 109.47346 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.46388 * 299.99342 * 3 2 1 33 33 H 1.08998 * 109.47272 * 59.99310 * 3 2 1 34 34 H 0.97001 * 119.99039 * 179.97438 * 7 6 4 35 35 H 1.08999 * 109.47481 * 180.02562 * 12 2 1 36 36 H 1.09001 * 109.47075 * 59.99902 * 12 2 1 37 37 H 0.96997 * 120.00415 * 245.00278 * 16 13 12 38 38 H 0.96998 * 119.99869 * 0.02562 * 20 19 17 39 39 H 0.96997 * 119.99746 * 180.02562 * 20 19 17 40 40 H 1.07995 * 120.42293 * 0.02562 * 23 22 17 41 41 H 1.08002 * 120.79032 * 180.23545 * 24 23 22 42 42 H 1.07997 * 120.42030 * 179.78439 * 25 24 23 43 43 H 1.07998 * 119.61997 * 180.24880 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6422 -1.5965 -1.1311 6 6 1.7137 -0.2296 -2.4826 7 7 1.8972 -0.9851 -3.5433 8 14 1.0213 1.4949 -2.6725 9 1 2.1372 2.4734 -2.7241 10 1 0.2330 1.5763 -3.9283 11 1 0.1435 1.8059 -1.5159 12 6 2.0400 -0.7211 1.2494 13 16 1.4352 0.1342 2.7304 14 8 0.0277 -0.0180 2.8544 15 8 2.0478 1.4104 2.8543 16 7 2.0528 -0.7404 3.9938 17 6 3.5012 -0.7976 4.2062 18 1 4.0144 -0.6160 3.2618 19 6 3.9040 0.2545 5.2072 20 7 5.1978 0.3881 5.5606 21 8 3.0641 0.9808 5.6948 22 6 3.8787 -2.1595 4.7293 23 6 5.1589 -2.6391 4.5246 24 6 5.4975 -3.8909 5.0145 25 6 4.5287 -4.6210 5.6863 26 6 3.2698 -4.0761 5.8530 27 7 2.9843 -2.8796 5.3773 28 1 -0.3634 0.6638 0.7845 29 1 -0.3633 0.3475 -0.9672 30 1 -0.3633 -1.0113 0.1826 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9562 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.6726 -0.6468 -4.4243 35 1 3.1300 -0.7208 1.2497 36 1 1.6766 -1.7488 1.2495 37 1 1.4556 -1.2147 4.5931 38 1 5.8696 -0.1926 5.1703 39 1 5.4570 1.0650 6.2051 40 1 5.8874 -2.0443 3.9938 41 1 6.4912 -4.2898 4.8729 42 1 4.7565 -5.6013 6.0782 43 1 2.5109 -4.6366 6.3786 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364875409.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:42 Heat of formation + Delta-G solvation = -46.855544 kcal Electronic energy + Delta-G solvation = -28875.582076 eV Core-core repulsion = 24856.248780 eV Total energy + Delta-G solvation = -4019.333297 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.94562 -39.32891 -36.72392 -36.60996 -35.43945 -35.29166 -33.92801 -32.75067 -31.95357 -31.45232 -27.47227 -27.28146 -26.36300 -25.01172 -23.93293 -23.14585 -20.88633 -19.97301 -18.85494 -18.07052 -17.80248 -17.49504 -16.75883 -16.45535 -16.23432 -16.06632 -15.43105 -15.36219 -15.11714 -14.74960 -14.51756 -14.32130 -13.82469 -13.53007 -13.40259 -13.14584 -13.02612 -12.84020 -12.41289 -12.33051 -12.08078 -11.57567 -11.51375 -11.45216 -11.06829 -10.97934 -10.85254 -10.65931 -10.28291 -10.15855 -10.07189 -10.03921 -9.87798 -9.84762 -9.58887 -9.21952 -8.99353 -8.73945 -8.47260 -6.19922 -4.17223 0.59950 0.70995 0.87822 2.44997 2.93314 3.18506 3.26167 3.36296 3.39709 3.49951 3.74622 4.19043 4.28312 4.34510 4.47185 4.54265 4.66134 4.68398 4.70083 4.75536 5.07246 5.10112 5.23243 5.32457 5.44455 5.60372 5.69843 5.77352 5.99322 6.19566 6.22925 6.32655 6.45800 6.51451 6.60228 6.72184 6.87728 7.03196 7.13312 7.16460 7.32194 7.58979 7.62487 8.10014 8.38041 8.82191 9.44397 10.92492 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014927 B = 0.003902 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.300725 B = 7173.224187 C = 7882.857620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.055 3.945 3 C -0.182 4.182 4 C -0.507 4.507 5 H 0.078 0.922 6 C 0.078 3.922 7 N -0.889 5.889 8 Si 0.873 3.127 9 H -0.281 1.281 10 H -0.301 1.301 11 H -0.245 1.245 12 C -0.579 4.579 13 S 2.588 3.412 14 O -0.955 6.955 15 O -0.952 6.952 16 N -1.094 6.094 17 C 0.191 3.809 18 H 0.126 0.874 19 C 0.511 3.489 20 N -0.856 5.856 21 O -0.504 6.504 22 C 0.124 3.876 23 C -0.166 4.166 24 C -0.067 4.067 25 C -0.170 4.170 26 C 0.108 3.892 27 N -0.466 5.466 28 H 0.037 0.963 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.266 0.734 35 H 0.121 0.879 36 H 0.129 0.871 37 H 0.427 0.573 38 H 0.398 0.602 39 H 0.404 0.596 40 H 0.142 0.858 41 H 0.140 0.860 42 H 0.138 0.862 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.879 -6.784 18.940 22.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.052 3.948 3 C -0.239 4.239 4 C -0.546 4.546 5 H 0.096 0.904 6 C -0.125 4.125 7 N -0.525 5.525 8 Si 0.704 3.296 9 H -0.208 1.208 10 H -0.229 1.229 11 H -0.171 1.171 12 C -0.711 4.711 13 S 2.685 3.315 14 O -0.945 6.945 15 O -0.942 6.942 16 N -0.850 5.850 17 C 0.077 3.923 18 H 0.144 0.856 19 C 0.291 3.709 20 N -0.422 5.422 21 O -0.376 6.376 22 C -0.016 4.016 23 C -0.186 4.186 24 C -0.093 4.093 25 C -0.190 4.190 26 C -0.049 4.049 27 N -0.175 5.175 28 H 0.056 0.944 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.139 0.861 36 H 0.147 0.853 37 H 0.264 0.736 38 H 0.226 0.774 39 H 0.235 0.765 40 H 0.159 0.841 41 H 0.158 0.842 42 H 0.156 0.844 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 8.854 -5.200 19.079 21.667 hybrid contribution 1.290 -0.325 -0.415 1.394 sum 10.144 -5.526 18.664 21.949 Atomic orbital electron populations 1.22682 0.96946 1.01430 1.01800 1.18230 0.92615 0.91716 0.92233 1.22824 1.02275 0.97855 1.00930 1.20632 1.33948 1.12517 0.87492 0.90421 1.24953 0.94511 0.97283 0.95785 1.69938 1.47932 1.35762 0.98905 0.87453 0.79867 0.85667 0.76577 1.20793 1.22904 1.17119 1.30452 1.11454 1.13393 1.15842 1.05887 0.74853 0.75293 0.75485 1.93577 1.28873 1.86464 1.85622 1.93579 1.77906 1.37553 1.85154 1.55513 1.11085 1.70887 1.47520 1.19373 0.84386 0.89757 0.98810 0.85639 1.20721 0.82820 0.84667 0.82684 1.43817 1.08594 1.40958 1.48815 1.90779 1.50263 1.43753 1.52812 1.20810 0.90442 0.94772 0.95542 1.21904 0.97032 0.97695 1.02011 1.21589 0.99960 0.93435 0.94276 1.22237 0.94777 1.01534 1.00452 1.22828 0.95679 0.90934 0.95474 1.67230 1.35256 1.06714 1.08307 0.94375 0.91410 0.92284 0.91822 0.92977 0.93061 0.92426 0.86077 0.85287 0.73639 0.77352 0.76490 0.84065 0.84196 0.84415 0.82201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.94 6.95 37.16 0.26 -3.68 16 2 C 0.05 1.26 0.52 -155.66 -0.08 1.18 16 3 C -0.18 -4.10 7.22 37.16 0.27 -3.83 16 4 C -0.51 -13.50 8.62 -34.44 -0.30 -13.80 16 5 H 0.08 2.18 7.99 -52.48 -0.42 1.76 16 6 C 0.08 2.17 5.31 -17.82 -0.09 2.08 16 7 N -0.89 -26.25 13.96 55.43 0.77 -25.48 16 8 Si 0.87 21.55 22.79 -169.99 -3.87 17.67 16 9 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 10 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 11 H -0.25 -5.73 4.67 56.52 0.26 -5.46 16 12 C -0.58 -10.65 4.88 37.16 0.18 -10.46 16 13 S 2.59 48.02 4.42 -107.50 -0.47 47.55 16 14 O -0.96 -20.18 15.93 -57.54 -0.92 -21.10 16 15 O -0.95 -19.78 15.40 -57.54 -0.89 -20.67 16 16 N -1.09 -16.51 4.79 -6.88 -0.03 -16.55 16 17 C 0.19 2.35 2.74 -70.23 -0.19 2.15 16 18 H 0.13 1.23 7.12 -51.93 -0.37 0.86 16 19 C 0.51 6.81 7.45 -10.98 -0.08 6.72 16 20 N -0.86 -6.97 8.77 31.22 0.27 -6.70 16 21 O -0.50 -9.15 17.27 5.56 0.10 -9.05 16 22 C 0.12 1.27 5.79 -82.59 -0.48 0.80 16 23 C -0.17 -1.15 8.84 -39.44 -0.35 -1.50 16 24 C -0.07 -0.38 10.18 -39.28 -0.40 -0.78 16 25 C -0.17 -1.04 10.11 -39.44 -0.40 -1.44 16 26 C 0.11 0.88 11.18 -17.55 -0.20 0.69 16 27 N -0.47 -5.16 9.14 -9.47 -0.09 -5.25 16 28 H 0.04 0.83 6.21 -51.93 -0.32 0.51 16 29 H 0.07 1.59 4.32 -51.93 -0.22 1.37 16 30 H 0.06 1.28 8.11 -51.93 -0.42 0.86 16 31 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.05 1.21 2.28 -51.93 -0.12 1.09 16 33 H 0.05 1.10 5.46 -51.93 -0.28 0.82 16 34 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.12 1.89 7.44 -51.92 -0.39 1.50 16 36 H 0.13 2.19 8.14 -51.92 -0.42 1.77 16 37 H 0.43 6.27 7.93 -34.48 -0.27 5.99 16 38 H 0.40 1.86 7.33 -40.82 -0.30 1.56 16 39 H 0.40 2.83 8.93 -40.82 -0.36 2.47 16 40 H 0.14 0.54 7.57 -52.49 -0.40 0.15 16 41 H 0.14 0.42 8.06 -52.49 -0.42 0.00 16 42 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 43 H 0.16 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 350.56 15.07 5.28 5.28 Total: -1.00 -38.90 350.56 -6.97 -45.87 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -5.27 Total: 10.29 kcal Atomic # 6 Polarization: -20.02 SS G_CDS: -1.86 Total: -21.88 kcal Atomic # 7 Polarization: -54.90 SS G_CDS: 0.93 Total: -53.97 kcal Atomic # 8 Polarization: -49.11 SS G_CDS: -1.71 Total: -50.82 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -3.87 Total: 17.67 kcal Atomic # 16 Polarization: 48.02 SS G_CDS: -0.47 Total: 47.55 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -38.90 -6.97 -45.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364875409.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.982 kcal (2) G-P(sol) polarization free energy of solvation -38.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds