Wall clock time and date at job start Sat Apr 11 2020 06:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52992 * 109.47189 * 2 1 4 4 C 1.53005 * 109.46965 * 119.99865 * 2 1 3 5 5 N 1.46496 * 109.46807 * 180.02562 * 4 2 1 6 6 C 1.34777 * 120.00099 * 179.97438 * 5 4 2 7 7 O 1.21577 * 119.99827 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00422 * 179.97438 * 6 5 4 9 9 C 1.39239 * 120.00405 * 185.80033 * 8 6 5 10 10 C 1.39693 * 119.57304 * 18.80792 * 9 8 6 11 11 C 1.38641 * 119.49495 * 180.02562 * 10 9 8 12 12 C 1.38361 * 118.67060 * 359.73341 * 11 10 9 13 13 C 1.40572 * 119.12979 * 0.53335 * 12 11 10 14 14 C 1.41328 * 119.78467 * 179.72881 * 13 12 11 15 15 H 1.08003 * 120.00133 * 6.98045 * 14 13 12 16 16 C 1.40024 * 120.00038 * 186.97700 * 14 13 12 17 17 N 1.30746 * 120.00260 * 181.93444 * 16 14 13 18 18 Si 1.86806 * 119.99911 * 1.93817 * 16 14 13 19 19 H 1.48496 * 109.47403 * 179.97438 * 18 16 14 20 20 H 1.48504 * 109.46951 * 299.99645 * 18 16 14 21 21 H 1.48492 * 109.47090 * 59.99491 * 18 16 14 22 22 N 1.31900 * 119.57825 * 198.83121 * 9 8 6 23 23 S 1.81399 * 109.47161 * 239.99963 * 2 1 3 24 24 C 1.81395 * 101.92019 * 59.99784 * 23 2 1 25 25 O 1.42093 * 108.57719 * 174.48891 * 23 2 1 26 26 O 1.42103 * 108.57548 * 305.51230 * 23 2 1 27 27 H 1.09005 * 109.47044 * 299.99667 * 1 2 3 28 28 H 1.08992 * 109.47191 * 60.00566 * 1 2 3 29 29 H 1.09002 * 109.46893 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47511 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.46988 * 300.00474 * 3 2 1 32 32 H 1.09002 * 109.47217 * 59.99848 * 3 2 1 33 33 H 1.08996 * 109.46984 * 60.00256 * 4 2 1 34 34 H 1.09002 * 109.47139 * 299.99967 * 4 2 1 35 35 H 0.97001 * 120.00437 * 359.97438 * 5 4 2 36 36 H 0.97001 * 119.99346 * 5.81122 * 8 6 5 37 37 H 1.08001 * 120.25043 * 0.02562 * 10 9 8 38 38 H 1.08001 * 120.66587 * 180.02562 * 11 10 9 39 39 H 1.08001 * 120.43474 * 180.26074 * 12 11 10 40 40 H 0.96992 * 119.99851 * 354.83157 * 17 16 14 41 41 H 1.08993 * 109.47227 * 60.00288 * 24 23 2 42 42 H 1.09007 * 109.46931 * 180.02562 * 24 23 2 43 43 H 1.08996 * 109.47498 * 299.99885 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5050 -0.7207 1.2496 6 6 4.1789 -1.3037 2.2607 7 8 3.5711 -1.8305 3.1724 8 7 5.5267 -1.3037 2.2608 9 6 6.2229 -2.0085 3.2392 10 6 5.5717 -3.0115 3.9612 11 6 6.2664 -3.7118 4.9354 12 6 7.5948 -3.3965 5.1596 13 6 8.1921 -2.3729 4.4037 14 6 9.5465 -2.0355 4.6252 15 1 10.1506 -2.6349 5.2903 16 6 10.1054 -0.9241 3.9824 17 7 11.3682 -0.6340 4.1577 18 14 9.0467 0.1442 2.8745 19 1 9.8693 1.2486 2.3187 20 1 8.5061 -0.6788 1.7629 21 1 7.9230 0.7124 3.6616 22 7 7.4887 -1.7203 3.4726 23 16 2.1347 -0.8551 -1.4811 24 6 1.4229 0.1514 -2.8117 25 8 3.5496 -0.7331 -1.5284 26 8 1.5479 -2.1485 -1.5284 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 -1.7489 1.2493 34 1 1.6767 -0.2074 2.1393 35 1 3.9900 -0.3007 0.5221 36 1 6.0116 -0.8125 1.5792 37 1 4.5350 -3.2395 3.7621 38 1 5.7817 -4.4912 5.5046 39 1 8.1641 -3.9269 5.9086 40 1 11.8993 -1.1426 4.7902 41 1 1.7894 1.1746 -2.7291 42 1 1.7152 -0.2628 -3.7767 43 1 0.3361 0.1470 -2.7291 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365262119.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:39 Heat of formation + Delta-G solvation = -93.169042 kcal Electronic energy + Delta-G solvation = -28083.650222 eV Core-core repulsion = 24062.308622 eV Total energy + Delta-G solvation = -4021.341601 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.93543 -40.23957 -38.33153 -38.09727 -37.09606 -36.27311 -35.44265 -34.61469 -33.00292 -31.36304 -30.33317 -28.37307 -27.59967 -27.03439 -24.02685 -23.57528 -22.77822 -21.90245 -20.56143 -19.73808 -19.38922 -18.78539 -17.78039 -17.32081 -17.14285 -16.89697 -16.84473 -16.46592 -16.26638 -15.87913 -15.47001 -15.13790 -14.82342 -14.74377 -14.52447 -14.25616 -14.13972 -13.94640 -13.80674 -13.75028 -13.57393 -13.19722 -13.08916 -13.01283 -12.86584 -12.71281 -12.39423 -12.27425 -12.25559 -11.95102 -11.80502 -11.63805 -11.20550 -11.11991 -11.03369 -10.44235 -10.35986 -9.76270 -9.27667 -9.19412 -6.82300 -1.04221 0.55883 0.73558 1.26593 1.55653 1.67349 1.72273 1.90848 2.03034 2.44236 2.59663 2.67353 2.81627 3.05463 3.25201 3.53556 3.55420 3.82315 4.04799 4.08805 4.20367 4.35311 4.37388 4.52590 4.63610 4.66745 4.68545 4.68965 4.75699 4.76506 4.81046 4.97993 5.13829 5.26136 5.30086 5.31837 5.35884 5.42464 5.60194 5.74713 5.88478 6.01125 6.39594 6.56263 6.72434 7.24845 7.48887 7.94973 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.017747 B = 0.003130 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.352820 B = 8944.067949 C = 9750.259036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.532 4.532 3 C -0.150 4.150 4 C 0.146 3.854 5 N -0.742 5.742 6 C 0.711 3.289 7 O -0.589 6.589 8 N -0.666 5.666 9 C 0.393 3.607 10 C -0.308 4.308 11 C -0.025 4.025 12 C -0.292 4.292 13 C 0.258 3.742 14 C -0.506 4.506 15 H 0.071 0.929 16 C 0.016 3.984 17 N -0.829 5.829 18 Si 1.187 2.813 19 H -0.327 1.327 20 H -0.277 1.277 21 H -0.301 1.301 22 N -0.614 5.614 23 S 2.392 3.608 24 C -0.634 4.634 25 O -0.977 6.977 26 O -0.981 6.981 27 H 0.096 0.904 28 H 0.112 0.888 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.113 0.887 32 H 0.093 0.907 33 H 0.074 0.926 34 H 0.101 0.899 35 H 0.415 0.585 36 H 0.415 0.585 37 H 0.149 0.851 38 H 0.146 0.854 39 H 0.118 0.882 40 H 0.282 0.718 41 H 0.163 0.837 42 H 0.139 0.861 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.921 8.212 -15.625 31.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.624 4.624 3 C -0.208 4.208 4 C 0.022 3.978 5 N -0.404 5.404 6 C 0.411 3.589 7 O -0.467 6.467 8 N -0.314 5.314 9 C 0.162 3.838 10 C -0.332 4.332 11 C -0.049 4.049 12 C -0.314 4.314 13 C 0.133 3.867 14 C -0.539 4.539 15 H 0.089 0.911 16 C -0.201 4.201 17 N -0.452 5.452 18 Si 1.020 2.980 19 H -0.260 1.260 20 H -0.205 1.205 21 H -0.230 1.230 22 N -0.340 5.340 23 S 2.580 3.420 24 C -0.787 4.787 25 O -0.973 6.973 26 O -0.978 6.978 27 H 0.115 0.885 28 H 0.130 0.870 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.131 0.869 32 H 0.112 0.888 33 H 0.092 0.908 34 H 0.120 0.880 35 H 0.255 0.745 36 H 0.251 0.749 37 H 0.166 0.834 38 H 0.163 0.837 39 H 0.136 0.864 40 H 0.092 0.908 41 H 0.181 0.819 42 H 0.158 0.842 43 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -25.407 8.815 -16.303 31.449 hybrid contribution 0.503 -1.426 1.550 2.166 sum -24.904 7.389 -14.752 29.874 Atomic orbital electron populations 1.21927 0.85845 1.05012 1.07297 1.29901 1.09112 1.09427 1.13947 1.22024 1.01977 0.89522 1.07255 1.21275 0.77002 1.01315 0.98202 1.45480 1.07974 1.61799 1.25167 1.15749 0.80658 0.79508 0.82965 1.90811 1.67943 1.50541 1.37436 1.42326 1.05456 1.52852 1.30799 1.18104 0.88165 0.89105 0.88474 1.21874 1.03170 1.02765 1.05426 1.21333 0.92891 0.96310 0.94384 1.21770 0.96779 1.05624 1.07200 1.18471 0.92666 0.88920 0.86624 1.20709 0.95095 1.12135 1.25973 0.91052 1.28477 0.96677 0.97344 0.97588 1.70658 1.07112 1.39276 1.28184 0.81406 0.69891 0.71311 0.75361 1.26004 1.20487 1.22951 1.65855 1.08040 1.34737 1.25382 1.08597 0.75752 0.77448 0.80209 1.30131 1.15768 1.16647 1.16202 1.93502 1.29801 1.87662 1.86359 1.93549 1.79594 1.38077 1.86551 0.88468 0.86963 0.90816 0.91648 0.86871 0.88808 0.90768 0.88045 0.74452 0.74874 0.83357 0.83653 0.86419 0.90761 0.81887 0.84213 0.81884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.50 8.22 71.98 0.59 0.09 16 2 C -0.53 -5.15 0.62 -10.79 -0.01 -5.16 16 3 C -0.15 -0.79 8.05 71.98 0.58 -0.21 16 4 C 0.15 2.78 4.56 86.38 0.39 3.17 16 5 N -0.74 -19.24 4.86 -478.55 -2.33 -21.57 16 6 C 0.71 25.61 8.40 179.05 1.50 27.12 16 7 O -0.59 -24.19 13.14 -3.96 -0.05 -24.24 16 8 N -0.67 -26.66 5.42 -322.12 -1.75 -28.41 16 9 C 0.39 18.86 7.51 133.27 1.00 19.86 16 10 C -0.31 -14.19 8.83 22.72 0.20 -13.99 16 11 C -0.03 -1.09 10.15 22.40 0.23 -0.87 16 12 C -0.29 -14.19 9.83 22.87 0.22 -13.96 16 13 C 0.26 14.13 6.39 40.19 0.26 14.38 16 14 C -0.51 -29.05 9.58 23.46 0.22 -28.82 16 15 H 0.07 4.12 8.05 -2.91 -0.02 4.10 16 16 C 0.02 0.90 5.52 85.29 0.47 1.37 16 17 N -0.83 -47.09 13.65 21.84 0.30 -46.79 16 18 Si 1.19 59.04 25.53 68.60 1.75 60.79 16 19 H -0.33 -15.69 7.11 99.48 0.71 -14.98 16 20 H -0.28 -13.32 6.70 99.48 0.67 -12.66 16 21 H -0.30 -15.12 7.10 99.48 0.71 -14.42 16 22 N -0.61 -32.35 4.58 -186.37 -0.85 -33.20 16 23 S 2.39 33.89 4.28 -56.49 -0.24 33.65 16 24 C -0.63 -1.17 9.72 113.37 1.10 -0.07 16 25 O -0.98 -21.39 15.63 -127.37 -1.99 -23.38 16 26 O -0.98 -22.70 17.91 -127.37 -2.28 -24.98 16 27 H 0.10 0.20 8.14 -2.38 -0.02 0.18 16 28 H 0.11 -0.44 6.55 -2.39 -0.02 -0.46 16 29 H 0.07 0.44 8.06 -2.39 -0.02 0.42 16 30 H 0.06 0.55 6.78 -2.39 -0.02 0.54 16 31 H 0.11 -0.31 6.56 -2.39 -0.02 -0.32 16 32 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.42 9.53 5.17 -92.71 -0.48 9.05 16 36 H 0.41 14.89 8.84 -92.71 -0.82 14.07 16 37 H 0.15 6.70 5.33 -3.17 -0.02 6.68 16 38 H 0.15 5.15 8.06 -2.91 -0.02 5.13 16 39 H 0.12 5.32 8.06 -2.91 -0.02 5.30 16 40 H 0.28 15.44 8.72 -92.71 -0.81 14.63 16 41 H 0.16 -0.60 6.87 -2.39 -0.02 -0.62 16 42 H 0.14 0.24 8.14 -2.39 -0.02 0.22 16 43 H 0.16 -0.65 6.87 -2.39 -0.02 -0.67 16 Total: -1.00 -84.26 357.93 -0.98 -85.24 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: -0.31 Total: 19.98 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: 6.77 Total: 2.91 kcal Atomic # 7 Polarization: -125.34 SS G_CDS: -4.63 Total: -129.96 kcal Atomic # 8 Polarization: -68.28 SS G_CDS: -4.32 Total: -72.60 kcal Atomic # 14 Polarization: 59.04 SS G_CDS: 1.75 Total: 60.79 kcal Atomic # 16 Polarization: 33.89 SS G_CDS: -0.24 Total: 33.65 kcal Total: -84.26 -0.98 -85.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365262119.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.927 kcal (2) G-P(sol) polarization free energy of solvation -84.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds