Wall clock time and date at job start Sat Apr 11 2020 06:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47104 * 2 1 4 4 C 1.50697 * 109.46841 * 240.00375 * 2 1 3 5 5 H 1.07999 * 119.99817 * 238.33709 * 4 2 1 6 6 C 1.37875 * 120.00234 * 58.34358 * 4 2 1 7 7 N 1.31511 * 120.00225 * 2.54509 * 6 4 2 8 8 Si 1.86808 * 120.00037 * 182.54750 * 6 4 2 9 9 H 1.48504 * 109.46688 * 94.99390 * 8 6 4 10 10 H 1.48496 * 109.47196 * 214.98952 * 8 6 4 11 11 H 1.48499 * 109.46914 * 334.99520 * 8 6 4 12 12 C 1.52993 * 109.47404 * 119.99940 * 2 1 3 13 13 N 1.46496 * 109.47375 * 300.00220 * 12 2 1 14 14 C 1.34780 * 120.00197 * 179.97438 * 13 12 2 15 15 O 1.21579 * 120.00045 * 0.02562 * 14 13 12 16 16 N 1.34767 * 120.00047 * 179.97438 * 14 13 12 17 17 C 1.39397 * 120.00032 * 185.03534 * 16 14 13 18 18 C 1.39044 * 119.69651 * 174.59612 * 17 16 14 19 19 C 1.38356 * 119.10118 * 180.02562 * 18 17 16 20 20 C 1.38842 * 118.49346 * 359.97438 * 19 18 17 21 21 S 1.76203 * 120.34199 * 180.02562 * 20 19 18 22 22 C 1.81393 * 104.44865 * 89.99986 * 21 20 19 23 23 O 1.42101 * 104.27743 * 206.07409 * 21 20 19 24 24 O 1.42106 * 104.27482 * 333.92875 * 21 20 19 25 25 C 1.38059 * 119.31693 * 0.02562 * 20 19 18 26 26 N 1.31944 * 120.84723 * 0.02562 * 25 20 19 27 27 H 1.08999 * 109.46923 * 295.03673 * 1 2 3 28 28 H 1.09003 * 109.47447 * 55.03659 * 1 2 3 29 29 H 1.09000 * 109.46858 * 175.03984 * 1 2 3 30 30 H 1.08998 * 109.47168 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.47319 * 300.00369 * 3 2 1 32 32 H 1.09000 * 109.47153 * 59.99942 * 3 2 1 33 33 H 0.96997 * 120.00146 * 179.97438 * 7 6 4 34 34 H 1.08998 * 109.47139 * 179.97438 * 12 2 1 35 35 H 1.09004 * 109.47072 * 60.00314 * 12 2 1 36 36 H 0.96995 * 120.00060 * 359.97438 * 13 12 2 37 37 H 0.97006 * 120.00369 * 5.04126 * 16 14 13 38 38 H 1.07998 * 120.45244 * 0.27559 * 18 17 16 39 39 H 1.08002 * 120.74835 * 180.02562 * 19 18 17 40 40 H 1.09001 * 109.47462 * 60.00208 * 22 21 20 41 41 H 1.09008 * 109.47109 * 179.97438 * 22 21 20 42 42 H 1.09003 * 109.47192 * 299.99862 * 22 21 20 43 43 H 1.07997 * 119.57781 * 179.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7103 -1.2305 5 1 2.6751 -1.5725 -1.1317 6 6 1.6712 -0.2595 -2.4824 7 7 0.9297 0.8198 -2.6042 8 14 2.2353 -1.1818 -4.0059 9 1 1.1751 -2.1309 -4.4307 10 1 2.5007 -0.2140 -5.1005 11 1 3.4782 -1.9336 -3.6975 12 6 2.0400 -0.7212 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8770 -0.4914 3.6695 15 8 2.5760 -1.4799 3.7810 16 7 1.4282 0.1441 4.7699 17 6 1.8489 -0.2682 6.0332 18 6 1.4728 0.4602 7.1563 19 6 1.8977 0.0402 8.4042 20 6 2.6872 -1.0990 8.4862 21 16 3.2549 -1.6777 10.0507 22 6 1.9574 -2.8152 10.6105 23 8 4.4468 -2.3903 9.7493 24 8 3.2833 -0.5139 10.8656 25 6 3.0228 -1.7737 7.3294 26 7 2.6036 -1.3489 6.1527 27 1 -0.3633 0.4349 0.9311 28 1 -0.3634 0.5889 -0.8422 29 1 -0.3633 -1.0238 -0.0889 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9564 0.8900 33 1 0.6760 1.1372 -3.4849 34 1 3.1300 -0.7216 1.2489 35 1 1.6768 -1.7489 1.2492 36 1 0.9944 0.7581 2.3564 37 1 0.8123 0.8885 4.6828 38 1 0.8539 1.3396 7.0563 39 1 1.6209 0.5857 9.2943 40 1 1.8504 -3.6268 9.8909 41 1 2.2291 -3.2259 11.5830 42 1 1.0134 -2.2767 10.6940 43 1 3.6370 -2.6600 7.3884 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001366263821.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:58 Heat of formation + Delta-G solvation = -44.255823 kcal Electronic energy + Delta-G solvation = -26906.171656 eV Core-core repulsion = 22886.951092 eV Total energy + Delta-G solvation = -4019.220564 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.01614 -39.36253 -37.41416 -36.65561 -36.24864 -34.94906 -33.44339 -32.77160 -31.17544 -30.29619 -29.79830 -25.83978 -25.79635 -25.16561 -24.28211 -23.59227 -20.91333 -19.46501 -18.95041 -18.77489 -18.18774 -17.72479 -16.59892 -16.52720 -15.88068 -15.63815 -15.56129 -15.04535 -14.74248 -14.53411 -14.22818 -14.07354 -13.73942 -13.62366 -13.51447 -13.31950 -12.97928 -12.93299 -12.40203 -12.27867 -12.25533 -11.66121 -11.52971 -11.28274 -11.26364 -11.13860 -10.88582 -10.71324 -10.43831 -10.35811 -10.25575 -10.20099 -9.69521 -9.43264 -9.22953 -8.86574 -8.84346 -8.49462 -8.35093 -6.06994 -4.16363 -0.28677 0.44358 0.94929 2.39461 2.57708 3.08437 3.25754 3.33413 3.37795 3.51610 3.73027 3.74936 3.99092 4.32197 4.35296 4.38866 4.41560 4.51567 4.68371 4.86977 5.20544 5.20594 5.27505 5.37345 5.44744 5.89814 6.05495 6.26980 6.39492 6.43896 6.61837 6.73244 6.74085 6.91885 6.92790 6.95609 7.29210 7.49401 7.63665 7.67436 7.93876 8.04485 8.19329 8.33523 8.75268 8.84778 9.49614 10.94981 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.033432 B = 0.001946 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.319503 B =14382.861634 C =14822.420184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.056 3.944 3 C -0.130 4.130 4 C -0.506 4.506 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.149 3.851 13 N -0.725 5.725 14 C 0.682 3.318 15 O -0.529 6.529 16 N -0.669 5.669 17 C 0.439 3.561 18 C -0.236 4.236 19 C 0.048 3.952 20 C -0.765 4.765 21 S 2.514 3.486 22 C -0.651 4.651 23 O -0.937 6.937 24 O -0.941 6.941 25 C 0.237 3.763 26 N -0.483 5.483 27 H 0.004 0.996 28 H 0.083 0.917 29 H 0.029 0.971 30 H 0.027 0.973 31 H 0.085 0.915 32 H 0.005 0.995 33 H 0.260 0.740 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.395 0.605 37 H 0.415 0.585 38 H 0.146 0.854 39 H 0.154 0.846 40 H 0.133 0.867 41 H 0.131 0.869 42 H 0.131 0.869 43 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.737 -0.596 25.041 25.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.055 3.945 3 C -0.188 4.188 4 C -0.545 4.545 5 H 0.077 0.923 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.027 3.973 13 N -0.380 5.380 14 C 0.381 3.619 15 O -0.400 6.400 16 N -0.315 5.315 17 C 0.205 3.795 18 C -0.261 4.261 19 C 0.022 3.978 20 C -0.856 4.856 21 S 2.692 3.308 22 C -0.801 4.801 23 O -0.934 6.934 24 O -0.938 6.938 25 C 0.075 3.925 26 N -0.198 5.198 27 H 0.023 0.977 28 H 0.102 0.898 29 H 0.048 0.952 30 H 0.046 0.954 31 H 0.104 0.896 32 H 0.024 0.976 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.230 0.770 37 H 0.252 0.748 38 H 0.163 0.837 39 H 0.172 0.828 40 H 0.151 0.849 41 H 0.149 0.851 42 H 0.149 0.851 43 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -2.197 -1.599 24.375 24.526 hybrid contribution -1.379 0.682 -0.818 1.742 sum -3.576 -0.917 23.556 23.844 Atomic orbital electron populations 1.21819 0.97693 1.00062 0.99090 1.18380 0.92831 0.92800 0.90487 1.21838 0.98693 0.98287 0.99968 1.20967 1.30355 1.13384 0.89768 0.92313 1.24880 0.94889 0.94849 0.98892 1.69811 1.37068 1.22302 1.23275 0.86540 0.79097 0.79601 0.82549 1.20754 1.21269 1.19816 1.21685 0.98160 0.95553 0.81923 1.45622 1.55251 1.32898 1.04274 1.16216 0.81600 0.83610 0.80446 1.91043 1.39411 1.24882 1.84619 1.43171 1.48560 1.36340 1.03431 1.18591 0.87652 0.88624 0.84596 1.21505 1.08563 1.04030 0.92023 1.21022 0.87893 0.90816 0.98083 1.31259 1.20930 1.11343 1.22092 1.04794 0.76120 0.75717 0.74170 1.30246 1.19492 1.17473 1.12889 1.93597 1.41309 1.74727 1.83752 1.93573 1.86576 1.46209 1.67480 1.22599 0.89124 0.95647 0.85170 1.67948 1.12581 1.12954 1.26308 0.97655 0.89805 0.95173 0.95353 0.89596 0.97649 0.93003 0.92564 0.92555 0.77029 0.74808 0.83672 0.82842 0.84867 0.85068 0.85074 0.80789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.79 8.05 37.16 0.30 -2.49 16 2 C 0.06 1.25 0.50 -155.67 -0.08 1.17 16 3 C -0.13 -2.83 8.09 37.16 0.30 -2.53 16 4 C -0.51 -12.98 8.01 -34.44 -0.28 -13.26 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.71 5.14 -17.82 -0.09 1.62 16 7 N -0.89 -23.16 9.42 55.43 0.52 -22.63 16 8 Si 0.89 20.50 29.54 -169.99 -5.02 15.47 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 12 C 0.15 3.07 4.50 -4.05 -0.02 3.05 16 13 N -0.73 -12.20 4.92 -65.23 -0.32 -12.53 16 14 C 0.68 11.67 8.52 -86.92 -0.74 10.93 16 15 O -0.53 -11.25 14.61 5.30 0.08 -11.17 16 16 N -0.67 -8.36 5.39 -15.81 -0.09 -8.44 16 17 C 0.44 5.63 7.42 -154.71 -1.15 4.48 16 18 C -0.24 -2.10 9.94 -39.24 -0.39 -2.49 16 19 C 0.05 0.39 9.59 -39.31 -0.38 0.01 16 20 C -0.77 -6.89 5.67 -39.42 -0.22 -7.11 16 21 S 2.51 17.91 5.81 -107.50 -0.62 17.29 16 22 C -0.65 -1.95 10.79 101.05 1.09 -0.85 16 23 O -0.94 -10.02 17.14 -57.54 -0.99 -11.01 16 24 O -0.94 -9.29 17.20 -57.54 -0.99 -10.28 16 25 C 0.24 2.78 10.63 -17.57 -0.19 2.59 16 26 N -0.48 -7.33 7.89 -12.37 -0.10 -7.43 16 27 H 0.00 0.08 6.74 -51.93 -0.35 -0.27 16 28 H 0.08 2.01 6.19 -51.93 -0.32 1.69 16 29 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.09 2.08 6.11 -51.93 -0.32 1.76 16 32 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 33 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.39 5.74 6.17 -40.82 -0.25 5.49 16 37 H 0.42 3.42 8.72 -40.82 -0.36 3.07 16 38 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 39 H 0.15 0.80 7.66 -52.49 -0.40 0.40 16 40 H 0.13 0.28 8.14 -51.92 -0.42 -0.14 16 41 H 0.13 0.21 8.14 -51.92 -0.42 -0.22 16 42 H 0.13 0.19 8.14 -51.92 -0.42 -0.23 16 43 H 0.18 1.72 7.57 -52.49 -0.40 1.33 16 LS Contribution 367.22 15.07 5.53 5.53 Total: -1.00 -36.29 367.22 -9.51 -45.80 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -5.68 Total: 4.27 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -1.84 Total: -4.88 kcal Atomic # 7 Polarization: -51.05 SS G_CDS: 0.02 Total: -51.03 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -1.90 Total: -32.46 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 16 Polarization: 17.91 SS G_CDS: -0.62 Total: 17.29 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -36.29 -9.51 -45.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001366263821.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.541 kcal (2) G-P(sol) polarization free energy of solvation -36.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds