Wall clock time and date at job start Sat Apr 11 2020 06:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47189 * 2 1 4 4 C 1.52997 * 109.46885 * 240.00127 * 2 1 3 5 5 N 1.46501 * 109.47075 * 119.99880 * 2 1 3 6 6 S 1.65604 * 119.99617 * 67.83963 * 5 2 1 7 7 O 1.42093 * 104.27928 * 313.34861 * 6 5 2 8 8 O 1.42106 * 104.27425 * 185.49335 * 6 5 2 9 9 C 1.81402 * 104.45022 * 69.42295 * 6 5 2 10 10 C 1.50695 * 109.46859 * 172.75471 * 9 6 5 11 11 O 1.21282 * 120.00322 * 359.97438 * 10 9 6 12 12 N 1.34778 * 120.00165 * 179.97438 * 10 9 6 13 13 C 1.39264 * 120.00452 * 185.52284 * 12 10 9 14 14 C 1.39676 * 119.57393 * 12.51475 * 13 12 10 15 15 C 1.38651 * 119.49707 * 180.02562 * 14 13 12 16 16 C 1.38348 * 118.66583 * 359.74091 * 15 14 13 17 17 C 1.40574 * 119.13511 * 0.49905 * 16 15 14 18 18 C 1.41334 * 119.79248 * 179.76911 * 17 16 15 19 19 H 1.08007 * 119.99766 * 8.46542 * 18 17 16 20 20 C 1.40024 * 120.00144 * 188.46706 * 18 17 16 21 21 N 1.30747 * 119.99762 * 190.03311 * 20 18 17 22 22 Si 1.86800 * 119.99995 * 10.02579 * 20 18 17 23 23 H 1.48504 * 109.47094 * 270.00283 * 22 20 18 24 24 H 1.48496 * 109.47107 * 30.00560 * 22 20 18 25 25 H 1.48501 * 109.46760 * 150.00628 * 22 20 18 26 26 N 1.31904 * 119.57656 * 192.52696 * 13 12 10 27 27 H 1.09002 * 109.46684 * 294.12579 * 1 2 3 28 28 H 1.09001 * 109.46942 * 54.11887 * 1 2 3 29 29 H 1.08997 * 109.47241 * 174.12114 * 1 2 3 30 30 H 1.09001 * 109.47294 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.47192 * 300.00208 * 3 2 1 32 32 H 1.08998 * 109.47319 * 59.99719 * 3 2 1 33 33 H 1.09003 * 109.47204 * 316.00645 * 4 2 1 34 34 H 1.08999 * 109.47645 * 76.00366 * 4 2 1 35 35 H 1.09005 * 109.47175 * 196.00545 * 4 2 1 36 36 H 0.96996 * 119.99854 * 247.83825 * 5 2 1 37 37 H 1.09001 * 109.47140 * 52.75980 * 9 6 5 38 38 H 1.08993 * 109.47046 * 292.75660 * 9 6 5 39 39 H 0.97005 * 119.99812 * 5.52897 * 12 10 9 40 40 H 1.08003 * 120.25289 * 359.97438 * 14 13 12 41 41 H 1.07995 * 120.66394 * 180.02562 * 15 14 13 42 42 H 1.08005 * 120.43142 * 180.24786 * 16 15 14 43 43 H 0.96999 * 120.00219 * 354.90799 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0184 -0.6906 1.1962 6 16 1.7843 -2.3214 1.3643 7 8 0.4195 -2.5168 1.0206 8 8 2.2591 -2.6106 2.6720 9 6 2.8683 -3.0654 0.1145 10 6 2.8789 -4.5626 0.2860 11 8 2.2205 -5.0770 1.1651 12 7 3.6201 -5.3300 -0.5375 13 6 3.5416 -6.7180 -0.4545 14 6 2.5156 -7.3072 0.2879 15 6 2.4393 -8.6892 0.3699 16 6 3.3863 -9.4468 -0.2959 17 6 4.3975 -8.7943 -1.0224 18 6 5.3748 -9.5547 -1.7037 19 1 5.2680 -10.6267 -1.7807 20 6 6.4815 -8.9182 -2.2789 21 7 7.2794 -9.5842 -3.0721 22 14 6.8177 -7.1175 -1.9130 23 1 6.1227 -6.2705 -2.9155 24 1 6.3184 -6.7868 -0.5542 25 1 8.2794 -6.8637 -1.9787 26 7 4.4373 -7.4591 -1.0776 27 1 -0.3633 0.4201 0.9379 28 1 -0.3633 0.6023 -0.8327 29 1 -0.3633 -1.0222 -0.1053 30 1 3.1301 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.4640 -1.6339 -1.4025 34 1 1.9268 -0.0704 -2.1163 35 1 3.0925 -0.9733 -1.1191 36 1 2.4788 -0.1926 1.8897 37 1 3.8803 -2.6788 0.2347 38 1 2.5000 -2.8163 -0.8806 39 1 4.2083 -4.9156 -1.1881 40 1 1.7878 -6.6911 0.7948 41 1 1.6538 -9.1647 0.9383 42 1 3.3515 -10.5255 -0.2546 43 1 7.1484 -10.5362 -3.2040 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434327708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:34 Heat of formation + Delta-G solvation = -94.499486 kcal Electronic energy + Delta-G solvation = -28090.231610 eV Core-core repulsion = 24068.832317 eV Total energy + Delta-G solvation = -4021.399293 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.94575 -40.03538 -39.10922 -38.02169 -37.06488 -36.46335 -35.47970 -33.02517 -32.66846 -31.91042 -30.78023 -28.20094 -28.05883 -27.25462 -24.32471 -23.66792 -21.96237 -21.45807 -20.44168 -20.25672 -19.24298 -18.87472 -18.02404 -17.72090 -17.27570 -16.97957 -16.77744 -16.34760 -15.97443 -15.66292 -15.57004 -15.14486 -14.97095 -14.64876 -14.62107 -14.28629 -14.13982 -13.95713 -13.74191 -13.35134 -13.23051 -13.16879 -12.98210 -12.83584 -12.80389 -12.53905 -12.39866 -12.35659 -12.22626 -11.94880 -11.88325 -11.68939 -11.50014 -11.12649 -10.97669 -10.55234 -10.46303 -9.72463 -9.36474 -9.26287 -6.83117 -0.95792 0.34731 0.71137 1.28626 1.45922 1.52913 1.71453 1.82323 2.02898 2.42145 2.62291 2.73911 3.03733 3.17424 3.52780 3.74591 3.80614 4.00070 4.02666 4.06394 4.09324 4.33745 4.39243 4.57612 4.65785 4.72062 4.74029 4.78386 4.91283 5.03347 5.07834 5.19622 5.26217 5.33113 5.36278 5.37729 5.46744 5.58978 5.68639 5.73866 5.87778 6.13806 6.14768 6.36556 6.59209 6.74717 7.43696 7.92869 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.018794 B = 0.003133 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.443696 B = 8934.016795 C = 9856.738139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.166 3.834 3 C -0.147 4.147 4 C -0.214 4.214 5 N -1.096 6.096 6 S 2.649 3.351 7 O -0.969 6.969 8 O -0.986 6.986 9 C -0.674 4.674 10 C 0.540 3.460 11 O -0.547 6.547 12 N -0.633 5.633 13 C 0.366 3.634 14 C -0.323 4.323 15 C -0.031 4.031 16 C -0.289 4.289 17 C 0.256 3.744 18 C -0.507 4.507 19 H 0.067 0.933 20 C 0.015 3.985 21 N -0.828 5.828 22 Si 1.173 2.827 23 H -0.269 1.269 24 H -0.275 1.275 25 H -0.326 1.326 26 N -0.599 5.599 27 H 0.055 0.945 28 H 0.084 0.916 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.428 0.572 37 H 0.211 0.789 38 H 0.208 0.792 39 H 0.427 0.573 40 H 0.159 0.841 41 H 0.142 0.858 42 H 0.115 0.885 43 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.737 25.788 1.733 26.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.078 3.922 3 C -0.205 4.205 4 C -0.272 4.272 5 N -0.859 5.859 6 S 2.739 3.261 7 O -0.958 6.958 8 O -0.976 6.976 9 C -0.801 4.801 10 C 0.327 3.673 11 O -0.425 6.425 12 N -0.278 5.278 13 C 0.135 3.865 14 C -0.347 4.347 15 C -0.055 4.055 16 C -0.311 4.311 17 C 0.131 3.869 18 C -0.540 4.540 19 H 0.085 0.915 20 C -0.202 4.202 21 N -0.451 5.451 22 Si 1.002 2.998 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.258 1.258 26 N -0.324 5.324 27 H 0.074 0.926 28 H 0.103 0.897 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.105 0.895 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.126 0.874 35 H 0.114 0.886 36 H 0.266 0.734 37 H 0.228 0.772 38 H 0.224 0.776 39 H 0.266 0.734 40 H 0.176 0.824 41 H 0.160 0.840 42 H 0.133 0.867 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.233 26.431 1.893 27.468 hybrid contribution -0.631 -2.409 0.186 2.497 sum -7.865 24.022 2.080 25.362 Atomic orbital electron populations 1.22703 0.94845 1.04147 1.03015 1.20406 0.93719 0.94909 0.83129 1.22074 1.02554 0.92075 1.03833 1.23094 1.03213 1.02166 0.98680 1.55627 1.74294 1.24996 1.31014 1.03677 0.74861 0.73468 0.74098 1.93536 1.31774 1.85528 1.84995 1.93552 1.83029 1.84297 1.36677 1.31799 1.24016 0.98894 1.25434 1.20020 0.78494 0.88580 0.80206 1.90680 1.43730 1.74479 1.33616 1.43065 1.43667 1.03573 1.37519 1.18419 0.90767 0.83787 0.93564 1.22317 1.04368 0.96122 1.11848 1.21354 0.96350 0.93311 0.94513 1.21809 1.01512 0.99858 1.07964 1.18390 0.92330 0.86710 0.89440 1.20688 1.05977 0.95537 1.31779 0.91455 1.28613 0.91002 1.11842 0.88731 1.70641 1.37326 1.11543 1.25605 0.81836 0.71001 0.68534 0.78430 1.19529 1.20287 1.25842 1.66312 1.27650 1.07246 1.31236 0.92619 0.89678 0.91348 0.90381 0.89517 0.91754 0.92004 0.87423 0.88563 0.73420 0.77170 0.77562 0.73427 0.82441 0.84020 0.86700 0.90841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.49 8.13 71.98 0.59 -1.91 16 2 C 0.17 1.50 1.13 3.60 0.00 1.51 16 3 C -0.15 -0.62 8.53 71.98 0.61 0.00 16 4 C -0.21 -1.27 6.79 71.98 0.49 -0.78 16 5 N -1.10 -13.13 5.46 -152.21 -0.83 -13.97 16 6 S 2.65 58.32 4.39 -56.49 -0.25 58.08 16 7 O -0.97 -27.35 14.95 -127.65 -1.91 -29.26 16 8 O -0.99 -30.53 17.80 -124.51 -2.22 -32.75 16 9 C -0.67 -10.99 4.99 71.23 0.36 -10.63 16 10 C 0.54 16.20 7.73 87.66 0.68 16.88 16 11 O -0.55 -21.04 12.21 -0.01 0.00 -21.04 16 12 N -0.63 -20.91 5.41 -308.36 -1.67 -22.58 16 13 C 0.37 16.06 7.57 133.25 1.01 17.07 16 14 C -0.32 -14.23 8.94 22.72 0.20 -14.03 16 15 C -0.03 -1.33 10.15 22.39 0.23 -1.10 16 16 C -0.29 -13.71 9.83 22.87 0.22 -13.48 16 17 C 0.26 13.39 6.32 40.19 0.25 13.65 16 18 C -0.51 -27.96 9.55 23.47 0.22 -27.74 16 19 H 0.07 3.79 8.06 -2.91 -0.02 3.77 16 20 C 0.01 0.79 5.52 85.29 0.47 1.26 16 21 N -0.83 -45.21 13.65 21.84 0.30 -44.91 16 22 Si 1.17 53.12 26.11 68.60 1.79 54.91 16 23 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 24 H -0.28 -12.58 6.11 99.48 0.61 -11.98 16 25 H -0.33 -14.46 7.11 99.48 0.71 -13.75 16 26 N -0.60 -29.20 4.56 -186.36 -0.85 -30.05 16 27 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.07 1.29 5.65 -2.39 -0.01 1.27 16 30 H 0.08 0.16 8.14 -2.39 -0.02 0.14 16 31 H 0.09 0.17 8.14 -2.38 -0.02 0.15 16 32 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 33 H 0.06 0.48 6.17 -2.39 -0.01 0.47 16 34 H 0.11 0.26 8.04 -2.39 -0.02 0.24 16 35 H 0.10 0.17 6.87 -2.38 -0.02 0.15 16 36 H 0.43 3.54 8.58 -96.74 -0.83 2.71 16 37 H 0.21 1.44 8.13 -2.39 -0.02 1.42 16 38 H 0.21 1.89 4.79 -2.39 -0.01 1.88 16 39 H 0.43 11.08 8.83 -92.70 -0.82 10.27 16 40 H 0.16 6.84 4.92 -30.80 -0.15 6.69 16 41 H 0.14 5.01 8.06 -2.91 -0.02 4.99 16 42 H 0.11 5.11 8.06 -2.91 -0.02 5.09 16 43 H 0.28 14.93 8.73 -92.71 -0.81 14.12 16 Total: -1.00 -80.73 355.61 -1.15 -81.88 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: -0.85 Total: 18.99 kcal Atomic # 6 Polarization: -24.65 SS G_CDS: 5.34 Total: -19.31 kcal Atomic # 7 Polarization: -108.45 SS G_CDS: -3.05 Total: -111.50 kcal Atomic # 8 Polarization: -78.92 SS G_CDS: -4.13 Total: -83.05 kcal Atomic # 14 Polarization: 53.12 SS G_CDS: 1.79 Total: 54.91 kcal Atomic # 16 Polarization: 58.32 SS G_CDS: -0.25 Total: 58.08 kcal Total: -80.73 -1.15 -81.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434327708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.623 kcal (2) G-P(sol) polarization free energy of solvation -80.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds