Wall clock time and date at job start Sat Apr 11 2020 06:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47223 * 2 1 4 4 C 1.50702 * 109.47220 * 239.99838 * 2 1 3 5 5 H 1.08000 * 119.99528 * 240.00535 * 4 2 1 6 6 C 1.37875 * 119.99940 * 60.00062 * 4 2 1 7 7 N 1.31515 * 119.99966 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99859 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46859 * 60.00209 * 8 6 4 10 10 H 1.48498 * 109.46816 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47167 * 299.99825 * 8 6 4 12 12 C 1.52998 * 109.46698 * 119.99923 * 2 1 3 13 13 N 1.46502 * 109.47521 * 299.99593 * 12 2 1 14 14 C 1.34771 * 120.00228 * 180.02562 * 13 12 2 15 15 O 1.21583 * 120.00195 * 359.97438 * 14 13 12 16 16 N 1.34782 * 120.00056 * 180.02562 * 14 13 12 17 17 C 1.39945 * 119.99970 * 185.31431 * 16 14 13 18 18 C 1.38885 * 120.07048 * 33.27031 * 17 16 14 19 19 C 1.38092 * 119.93133 * 179.97438 * 18 17 16 20 20 C 1.38305 * 120.06440 * 0.26859 * 19 18 17 21 21 C 1.38260 * 120.14268 * 359.44817 * 20 19 18 22 22 S 1.76199 * 119.96577 * 180.27503 * 21 20 19 23 23 N 1.65600 * 107.22029 * 270.27946 * 22 21 20 24 24 O 1.42103 * 106.40133 * 23.81565 * 22 21 20 25 25 O 1.42102 * 106.40377 * 156.73984 * 22 21 20 26 26 C 1.38131 * 120.06991 * 0.55564 * 21 20 19 27 27 H 1.08998 * 109.47067 * 300.00278 * 1 2 3 28 28 H 1.09003 * 109.46943 * 60.00028 * 1 2 3 29 29 H 1.08997 * 109.47113 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47112 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.47137 * 299.99853 * 3 2 1 32 32 H 1.08998 * 109.47326 * 59.99880 * 3 2 1 33 33 H 0.97001 * 119.99827 * 180.02562 * 7 6 4 34 34 H 1.09003 * 109.46899 * 179.97438 * 12 2 1 35 35 H 1.08997 * 109.47451 * 60.00069 * 12 2 1 36 36 H 0.96998 * 119.99548 * 0.02562 * 13 12 2 37 37 H 0.97001 * 119.99851 * 5.31179 * 16 14 13 38 38 H 1.08002 * 120.03274 * 359.97438 * 18 17 16 39 39 H 1.07997 * 119.96890 * 179.97438 * 19 18 17 40 40 H 1.08005 * 119.92798 * 179.72811 * 20 19 18 41 41 H 0.97003 * 120.00094 * 0.02562 * 23 22 21 42 42 H 0.97003 * 120.00403 * 180.02562 * 23 22 21 43 43 H 1.07998 * 120.03947 * 179.73768 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3214 -1.1205 -4.0079 9 1 1.8258 -2.5203 -4.0076 10 1 1.8270 -0.4200 -5.2204 11 1 3.8064 -1.1211 -4.0081 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0306 2.4455 14 6 1.8776 -0.4908 3.6695 15 8 2.5765 -1.4794 3.7812 16 7 1.4279 0.1444 4.7700 17 6 1.8555 -0.2651 6.0381 18 6 3.1396 -0.7652 6.2116 19 6 3.5587 -1.1680 7.4642 20 6 2.6994 -1.0789 8.5442 21 6 1.4225 -0.5761 8.3759 22 16 0.3341 -0.4579 9.7564 23 7 -0.4985 -1.8865 9.8480 24 8 1.1578 -0.3988 10.9129 25 8 -0.6207 0.5427 9.4302 26 6 0.9972 -0.1716 7.1255 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 0.7090 1.1613 -3.4844 34 1 3.1299 -0.7217 1.2491 35 1 1.6766 -1.7489 1.2493 36 1 0.9937 0.7579 2.3564 37 1 0.8079 0.8853 4.6831 38 1 3.8095 -0.8390 5.3677 39 1 4.5569 -1.5573 7.5997 40 1 3.0280 -1.3986 9.5221 41 1 -0.3297 -2.5886 9.2003 42 1 -1.1550 -2.0213 10.5493 43 1 -0.0017 0.2171 6.9937 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001465575150.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:59 Heat of formation + Delta-G solvation = -77.623289 kcal Electronic energy + Delta-G solvation = -26999.264120 eV Core-core repulsion = 22978.596634 eV Total energy + Delta-G solvation = -4020.667486 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.69869 -38.92260 -37.42375 -36.63467 -36.11124 -34.78655 -33.53750 -33.47515 -31.56482 -31.09180 -29.59264 -25.81118 -25.73764 -25.01923 -23.80904 -22.80837 -21.10941 -19.78326 -19.04337 -18.63396 -18.50746 -17.70877 -17.00256 -16.53842 -16.19302 -15.89017 -15.58260 -15.38603 -14.92606 -14.64487 -14.62162 -14.05717 -13.82655 -13.42254 -12.97720 -12.95417 -12.61471 -12.43974 -12.38332 -12.30981 -12.28135 -11.98391 -11.51357 -11.27755 -11.22038 -10.93764 -10.84665 -10.78742 -10.68006 -10.45530 -10.29053 -10.05833 -9.72504 -9.55445 -9.42455 -8.88562 -8.72019 -8.44951 -8.25612 -6.08583 -4.19093 0.07069 0.53365 0.97266 2.66029 2.77505 3.05171 3.25808 3.30560 3.31356 3.33980 3.55738 4.21477 4.29195 4.39644 4.59164 4.72814 4.91017 5.11940 5.18382 5.22312 5.38776 5.62304 5.65972 5.90577 6.05067 6.08029 6.18695 6.22554 6.39814 6.64157 6.64307 6.69193 6.73255 6.76612 6.88148 6.93108 7.03717 7.27423 7.47366 7.62828 7.92959 8.01603 8.13938 8.31037 8.65958 8.81446 9.47095 10.92860 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.029599 B = 0.002024 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.740701 B =13828.388947 C =14234.251293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.057 3.943 3 C -0.131 4.131 4 C -0.508 4.508 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.895 3.105 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 C 0.148 3.852 13 N -0.723 5.723 14 C 0.696 3.304 15 O -0.582 6.582 16 N -0.693 5.693 17 C 0.163 3.837 18 C -0.062 4.062 19 C -0.119 4.119 20 C -0.044 4.044 21 C -0.656 4.656 22 S 2.705 3.295 23 N -1.251 6.251 24 O -0.965 6.965 25 O -0.965 6.965 26 C -0.057 4.057 27 H 0.005 0.995 28 H 0.086 0.914 29 H 0.027 0.973 30 H 0.027 0.973 31 H 0.086 0.914 32 H 0.005 0.995 33 H 0.261 0.739 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.397 0.603 37 H 0.409 0.591 38 H 0.148 0.852 39 H 0.137 0.863 40 H 0.142 0.858 41 H 0.418 0.582 42 H 0.419 0.581 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.713 -2.142 22.123 22.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.056 3.944 3 C -0.189 4.189 4 C -0.546 4.546 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.723 3.277 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.026 3.974 13 N -0.377 5.377 14 C 0.397 3.603 15 O -0.460 6.460 16 N -0.341 5.341 17 C 0.066 3.934 18 C -0.083 4.083 19 C -0.138 4.138 20 C -0.064 4.064 21 C -0.745 4.745 22 S 2.794 3.206 23 N -0.926 5.926 24 O -0.954 6.954 25 O -0.954 6.954 26 C -0.079 4.079 27 H 0.024 0.976 28 H 0.105 0.895 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.105 0.895 32 H 0.024 0.976 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.232 0.768 37 H 0.245 0.755 38 H 0.166 0.834 39 H 0.155 0.845 40 H 0.159 0.841 41 H 0.245 0.755 42 H 0.250 0.750 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -1.146 -2.001 22.470 22.588 hybrid contribution -0.144 -0.420 -1.657 1.715 sum -1.290 -2.422 20.813 20.993 Atomic orbital electron populations 1.21840 0.97719 0.99238 1.00101 1.18367 0.92837 0.92794 0.90404 1.21839 0.98643 0.98304 1.00104 1.20915 1.31728 1.12196 0.89793 0.92425 1.24878 0.94803 0.94906 0.98892 1.69787 1.36502 1.22666 1.23444 0.86612 0.79240 0.79782 0.82097 1.20254 1.21306 1.20259 1.21706 0.98102 0.95568 0.82067 1.45587 1.54949 1.32779 1.04349 1.16060 0.80853 0.82822 0.80609 1.90905 1.42581 1.26860 1.85634 1.42780 1.50611 1.37369 1.03387 1.17537 0.92855 0.98919 0.84106 1.21681 0.94111 0.94202 0.98269 1.21217 1.00385 1.00292 0.91924 1.20898 0.91491 0.94223 0.99776 1.30226 1.11849 1.17023 1.15364 1.01404 0.73374 0.72498 0.73276 1.53050 1.58933 1.36099 1.44472 1.93602 1.68940 1.85707 1.47188 1.93606 1.60964 1.56552 1.84265 1.20606 0.99124 0.97646 0.90520 0.97584 0.89518 0.95367 0.95371 0.89520 0.97578 0.92872 0.92575 0.92594 0.76761 0.75534 0.83418 0.84536 0.84054 0.75478 0.75041 0.83769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.82 8.08 37.16 0.30 -2.52 16 2 C 0.06 1.25 0.50 -155.66 -0.08 1.17 16 3 C -0.13 -2.82 8.08 37.16 0.30 -2.52 16 4 C -0.51 -12.83 8.01 -34.44 -0.28 -13.11 16 5 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 6 C 0.07 1.71 5.15 -17.82 -0.09 1.61 16 7 N -0.89 -22.97 9.35 55.43 0.52 -22.45 16 8 Si 0.89 20.23 29.54 -169.99 -5.02 15.21 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 12 C 0.15 2.95 4.50 -4.04 -0.02 2.94 16 13 N -0.72 -11.80 4.96 -65.22 -0.32 -12.12 16 14 C 0.70 11.14 8.30 -86.92 -0.72 10.42 16 15 O -0.58 -11.17 14.03 5.29 0.07 -11.09 16 16 N -0.69 -8.43 5.35 -14.22 -0.08 -8.51 16 17 C 0.16 1.96 6.28 -83.69 -0.53 1.44 16 18 C -0.06 -0.76 8.66 -39.40 -0.34 -1.10 16 19 C -0.12 -1.16 10.04 -39.61 -0.40 -1.56 16 20 C -0.04 -0.39 9.52 -39.55 -0.38 -0.77 16 21 C -0.66 -6.08 5.94 -39.61 -0.24 -6.32 16 22 S 2.71 22.90 6.28 -107.50 -0.67 22.23 16 23 N -1.25 -6.04 9.55 60.35 0.58 -5.47 16 24 O -0.97 -10.83 17.29 -57.17 -0.99 -11.82 16 25 O -0.96 -11.17 17.28 -57.17 -0.99 -12.16 16 26 C -0.06 -0.58 9.44 -39.40 -0.37 -0.95 16 27 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 28 H 0.09 2.08 6.07 -51.93 -0.32 1.77 16 29 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.09 2.09 6.07 -51.93 -0.32 1.77 16 32 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 33 H 0.26 6.58 8.31 -40.82 -0.34 6.24 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.40 5.74 6.18 -40.82 -0.25 5.49 16 37 H 0.41 3.73 8.83 -40.82 -0.36 3.37 16 38 H 0.15 2.04 6.41 -52.49 -0.34 1.70 16 39 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 40 H 0.14 1.00 7.62 -52.48 -0.40 0.60 16 41 H 0.42 1.30 8.92 -34.47 -0.31 0.99 16 42 H 0.42 1.31 8.96 -34.48 -0.31 1.00 16 43 H 0.14 1.24 7.61 -52.49 -0.40 0.84 16 LS Contribution 364.52 15.07 5.49 5.49 Total: -1.00 -33.39 364.52 -9.61 -43.00 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -5.36 Total: 8.95 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: -2.83 Total: -11.26 kcal Atomic # 7 Polarization: -49.24 SS G_CDS: 0.69 Total: -48.55 kcal Atomic # 8 Polarization: -33.17 SS G_CDS: -1.90 Total: -35.07 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Atomic # 16 Polarization: 22.90 SS G_CDS: -0.67 Total: 22.23 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.39 -9.61 -43.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001465575150.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.623 kcal (2) G-P(sol) polarization free energy of solvation -33.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds