Wall clock time and date at job start Sat Apr 11 2020 06:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47223 * 2 1 4 4 C 1.50702 * 109.47220 * 239.99838 * 2 1 3 5 5 H 1.08000 * 119.99528 * 240.00535 * 4 2 1 6 6 C 1.37875 * 119.99940 * 60.00062 * 4 2 1 7 7 N 1.31515 * 119.99966 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99859 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46859 * 60.00209 * 8 6 4 10 10 H 1.48498 * 109.46816 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47167 * 299.99825 * 8 6 4 12 12 C 1.52998 * 109.46698 * 119.99923 * 2 1 3 13 13 N 1.46502 * 109.47521 * 299.99593 * 12 2 1 14 14 C 1.34771 * 120.00228 * 180.02562 * 13 12 2 15 15 O 1.21583 * 120.00195 * 359.97438 * 14 13 12 16 16 N 1.34782 * 120.00056 * 180.02562 * 14 13 12 17 17 C 1.39945 * 119.99970 * 185.31431 * 16 14 13 18 18 C 1.38885 * 120.07048 * 33.27031 * 17 16 14 19 19 C 1.38092 * 119.93133 * 179.97438 * 18 17 16 20 20 C 1.38305 * 120.06440 * 0.26859 * 19 18 17 21 21 C 1.38260 * 120.14268 * 359.44817 * 20 19 18 22 22 S 1.76199 * 119.96577 * 180.27503 * 21 20 19 23 23 N 1.65600 * 107.22029 * 270.27946 * 22 21 20 24 24 O 1.42103 * 106.40133 * 23.81565 * 22 21 20 25 25 O 1.42102 * 106.40377 * 156.73984 * 22 21 20 26 26 C 1.38131 * 120.06991 * 0.55564 * 21 20 19 27 27 H 1.08998 * 109.47067 * 300.00278 * 1 2 3 28 28 H 1.09003 * 109.46943 * 60.00028 * 1 2 3 29 29 H 1.08997 * 109.47113 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47112 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.47137 * 299.99853 * 3 2 1 32 32 H 1.08998 * 109.47326 * 59.99880 * 3 2 1 33 33 H 0.97001 * 119.99827 * 180.02562 * 7 6 4 34 34 H 1.09003 * 109.46899 * 179.97438 * 12 2 1 35 35 H 1.08997 * 109.47451 * 60.00069 * 12 2 1 36 36 H 0.96998 * 119.99548 * 0.02562 * 13 12 2 37 37 H 0.97001 * 119.99851 * 5.31179 * 16 14 13 38 38 H 1.08002 * 120.03274 * 359.97438 * 18 17 16 39 39 H 1.07997 * 119.96890 * 179.97438 * 19 18 17 40 40 H 1.08005 * 119.92798 * 179.72811 * 20 19 18 41 41 H 0.97003 * 120.00094 * 0.02562 * 23 22 21 42 42 H 0.97003 * 120.00403 * 180.02562 * 23 22 21 43 43 H 1.07998 * 120.03947 * 179.73768 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3214 -1.1205 -4.0079 9 1 1.8258 -2.5203 -4.0076 10 1 1.8270 -0.4200 -5.2204 11 1 3.8064 -1.1211 -4.0081 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0306 2.4455 14 6 1.8776 -0.4908 3.6695 15 8 2.5765 -1.4794 3.7812 16 7 1.4279 0.1444 4.7700 17 6 1.8555 -0.2651 6.0381 18 6 3.1396 -0.7652 6.2116 19 6 3.5587 -1.1680 7.4642 20 6 2.6994 -1.0789 8.5442 21 6 1.4225 -0.5761 8.3759 22 16 0.3341 -0.4579 9.7564 23 7 -0.4985 -1.8865 9.8480 24 8 1.1578 -0.3988 10.9129 25 8 -0.6207 0.5427 9.4302 26 6 0.9972 -0.1716 7.1255 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 0.7090 1.1613 -3.4844 34 1 3.1299 -0.7217 1.2491 35 1 1.6766 -1.7489 1.2493 36 1 0.9937 0.7579 2.3564 37 1 0.8079 0.8853 4.6831 38 1 3.8095 -0.8390 5.3677 39 1 4.5569 -1.5573 7.5997 40 1 3.0280 -1.3986 9.5221 41 1 -0.3297 -2.5886 9.2003 42 1 -1.1550 -2.0213 10.5493 43 1 -0.0017 0.2171 6.9937 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001465575150.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:58 Heat of formation + Delta-G solvation = -103.886082 kcal Electronic energy + Delta-G solvation = -27000.402960 eV Core-core repulsion = 22978.596634 eV Total energy + Delta-G solvation = -4021.806326 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.80358 -39.96674 -38.24847 -38.19901 -36.91172 -35.88922 -35.07785 -34.01416 -32.81373 -32.34919 -30.59997 -27.56349 -27.46356 -26.70912 -24.68330 -23.73827 -22.26949 -20.70096 -20.45460 -19.76362 -19.52025 -18.32733 -17.83153 -17.71420 -17.42460 -17.04597 -16.65289 -16.55848 -16.31028 -15.88329 -15.70744 -15.26479 -14.86220 -14.73018 -14.67884 -14.13748 -14.00870 -13.46678 -13.21680 -13.20600 -13.17125 -13.11844 -13.09533 -12.76880 -12.68443 -12.62740 -12.26680 -12.14363 -12.07216 -11.68277 -11.48834 -11.36913 -11.32119 -11.16393 -10.71679 -10.40101 -10.38384 -10.06793 -9.25702 -8.02414 -6.17981 -0.62423 -0.27301 0.15363 1.44462 1.45581 1.50425 1.55620 1.91607 2.19591 2.44583 2.46027 2.78269 3.17040 3.21652 3.52043 3.81708 4.02738 4.04805 4.27072 4.40026 4.42278 4.52052 4.64482 4.70769 4.89705 4.97411 5.05476 5.05786 5.12115 5.19821 5.24301 5.29665 5.30398 5.36027 5.55762 5.67267 5.67482 5.81895 5.90269 6.15356 6.21644 6.35438 6.43169 6.86332 6.93982 7.41724 7.49911 8.96248 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.029599 B = 0.002024 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.740701 B =13828.388947 C =14234.251293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.052 3.948 3 C -0.122 4.122 4 C -0.528 4.528 5 H 0.046 0.954 6 C 0.028 3.972 7 N -0.899 5.899 8 Si 0.944 3.056 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.277 1.277 12 C 0.167 3.833 13 N -0.718 5.718 14 C 0.699 3.301 15 O -0.616 6.616 16 N -0.677 5.677 17 C 0.140 3.860 18 C -0.082 4.082 19 C -0.118 4.118 20 C -0.039 4.039 21 C -0.654 4.654 22 S 2.734 3.266 23 N -1.236 6.236 24 O -0.990 6.990 25 O -0.994 6.994 26 C -0.054 4.054 27 H 0.038 0.962 28 H 0.061 0.939 29 H 0.019 0.981 30 H 0.018 0.982 31 H 0.061 0.939 32 H 0.037 0.963 33 H 0.260 0.740 34 H 0.041 0.959 35 H 0.040 0.960 36 H 0.408 0.592 37 H 0.424 0.576 38 H 0.126 0.874 39 H 0.159 0.841 40 H 0.165 0.835 41 H 0.429 0.571 42 H 0.430 0.570 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.286 -2.291 24.019 24.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.052 3.948 3 C -0.180 4.180 4 C -0.567 4.567 5 H 0.064 0.936 6 C -0.172 4.172 7 N -0.538 5.538 8 Si 0.771 3.229 9 H -0.202 1.202 10 H -0.210 1.210 11 H -0.203 1.203 12 C 0.043 3.957 13 N -0.372 5.372 14 C 0.399 3.601 15 O -0.496 6.496 16 N -0.326 5.326 17 C 0.043 3.957 18 C -0.103 4.103 19 C -0.137 4.137 20 C -0.059 4.059 21 C -0.742 4.742 22 S 2.822 3.178 23 N -0.916 5.916 24 O -0.980 6.980 25 O -0.984 6.984 26 C -0.076 4.076 27 H 0.056 0.944 28 H 0.080 0.920 29 H 0.038 0.962 30 H 0.037 0.963 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.245 0.755 37 H 0.263 0.737 38 H 0.144 0.856 39 H 0.177 0.823 40 H 0.183 0.817 41 H 0.259 0.741 42 H 0.263 0.737 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -1.747 -2.123 24.401 24.556 hybrid contribution 0.041 -0.413 -2.123 2.164 sum -1.706 -2.536 22.278 22.487 Atomic orbital electron populations 1.21684 0.97110 0.98746 1.00430 1.18354 0.93260 0.93002 0.90221 1.21683 0.97980 0.97891 1.00402 1.21235 1.31756 1.12217 0.91465 0.93552 1.25442 0.95169 0.95590 1.00967 1.69898 1.36959 1.23259 1.23654 0.85836 0.78628 0.78832 0.79622 1.20234 1.20997 1.20267 1.21203 0.97022 0.94799 0.82701 1.45246 1.55305 1.33000 1.03668 1.16084 0.80433 0.82513 0.81066 1.90886 1.44046 1.28494 1.86183 1.42486 1.50303 1.37292 1.02549 1.17712 0.93363 1.00380 0.84204 1.21667 0.94281 0.95648 0.98734 1.21469 1.01580 0.99548 0.91084 1.21232 0.91088 0.93075 1.00529 1.30358 1.12244 1.16495 1.15130 1.00416 0.72617 0.72528 0.72201 1.52679 1.58662 1.35123 1.45132 1.93575 1.69732 1.86399 1.48261 1.93574 1.61735 1.58527 1.84524 1.20767 0.99532 0.97101 0.90174 0.94355 0.91977 0.96212 0.96253 0.91971 0.94411 0.93052 0.94073 0.94117 0.75465 0.73708 0.85606 0.82327 0.81736 0.74142 0.73701 0.82194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.17 8.08 71.98 0.58 -4.59 16 2 C 0.05 2.31 0.50 -52.93 -0.03 2.28 16 3 C -0.12 -5.18 8.08 71.98 0.58 -4.60 16 4 C -0.53 -27.04 8.01 25.60 0.21 -26.83 16 5 H 0.05 2.41 7.74 -2.91 -0.02 2.39 16 6 C 0.03 1.45 5.15 84.65 0.44 1.89 16 7 N -0.90 -46.94 9.35 21.45 0.20 -46.74 16 8 Si 0.94 41.72 29.54 68.60 2.03 43.75 16 9 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 10 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 11 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 12 C 0.17 6.67 4.50 86.38 0.39 7.06 16 13 N -0.72 -22.72 4.96 -478.54 -2.37 -25.09 16 14 C 0.70 21.94 8.30 179.05 1.49 23.43 16 15 O -0.62 -23.83 14.03 -3.98 -0.06 -23.88 16 16 N -0.68 -15.62 5.35 -317.18 -1.70 -17.32 16 17 C 0.14 3.20 6.28 38.15 0.24 3.44 16 18 C -0.08 -1.98 8.66 22.39 0.19 -1.78 16 19 C -0.12 -2.10 10.04 22.25 0.22 -1.88 16 20 C -0.04 -0.61 9.52 22.29 0.21 -0.40 16 21 C -0.65 -10.66 5.94 22.25 0.13 -10.52 16 22 S 2.73 40.27 6.28 -56.49 -0.35 39.92 16 23 N -1.24 -8.66 9.55 37.02 0.35 -8.31 16 24 O -0.99 -20.10 17.29 -128.00 -2.21 -22.32 16 25 O -0.99 -21.15 17.28 -128.00 -2.21 -23.36 16 26 C -0.05 -0.99 9.44 22.39 0.21 -0.78 16 27 H 0.04 1.33 6.86 -2.39 -0.02 1.31 16 28 H 0.06 2.97 6.07 -2.39 -0.01 2.95 16 29 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 2.98 6.07 -2.39 -0.01 2.96 16 32 H 0.04 1.32 6.86 -2.39 -0.02 1.30 16 33 H 0.26 13.16 8.31 -92.71 -0.77 12.39 16 34 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.41 10.96 6.18 -92.71 -0.57 10.39 16 37 H 0.42 6.91 8.83 -92.71 -0.82 6.09 16 38 H 0.13 3.57 6.41 -2.91 -0.02 3.55 16 39 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 40 H 0.17 1.80 7.62 -2.91 -0.02 1.78 16 41 H 0.43 1.43 8.92 -96.74 -0.86 0.56 16 42 H 0.43 1.54 8.96 -96.74 -0.87 0.67 16 43 H 0.16 2.37 7.61 -2.91 -0.02 2.35 16 Total: -1.00 -71.94 364.52 -3.48 -75.43 By element: Atomic # 1 Polarization: 23.23 SS G_CDS: -2.02 Total: 21.21 kcal Atomic # 6 Polarization: -18.15 SS G_CDS: 4.86 Total: -13.29 kcal Atomic # 7 Polarization: -93.94 SS G_CDS: -3.52 Total: -97.46 kcal Atomic # 8 Polarization: -65.08 SS G_CDS: -4.48 Total: -69.56 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Atomic # 16 Polarization: 40.27 SS G_CDS: -0.35 Total: 39.92 kcal Total: -71.94 -3.48 -75.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001465575150.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.461 kcal (2) G-P(sol) polarization free energy of solvation -71.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds