Wall clock time and date at job start Sat Apr 11 2020 06:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47351 * 2 1 4 4 C 1.50706 * 109.47228 * 179.97438 * 3 2 1 5 5 C 1.35311 * 126.66450 * 90.28743 * 4 3 2 6 6 C 1.42271 * 103.92043 * 180.09264 * 5 4 3 7 7 C 1.48334 * 126.93784 * 179.91390 * 6 5 4 8 8 O 1.21503 * 120.00080 * 359.70105 * 7 6 5 9 9 N 1.34777 * 120.00028 * 179.70657 * 7 6 5 10 10 C 1.46498 * 119.99828 * 180.27546 * 9 7 6 11 11 C 1.52996 * 109.47059 * 179.72339 * 10 9 7 12 12 N 1.46502 * 109.47591 * 179.97438 * 11 10 9 13 13 C 1.34770 * 120.00587 * 180.02562 * 12 11 10 14 14 O 1.21283 * 119.99583 * 359.97438 * 13 12 11 15 15 C 1.50702 * 120.00154 * 179.97438 * 13 12 11 16 16 S 1.80999 * 109.46901 * 179.97438 * 15 13 12 17 17 C 1.76200 * 99.99727 * 179.97438 * 16 15 13 18 18 H 1.07991 * 120.00271 * 0.02562 * 17 16 15 19 19 C 1.38809 * 119.99857 * 179.97438 * 17 16 15 20 20 N 1.31623 * 119.99816 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99715 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47421 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.46763 * 120.00744 * 21 19 17 24 24 H 1.48501 * 109.46845 * 240.00292 * 21 19 17 25 25 N 1.30978 * 106.12479 * 359.64516 * 6 5 4 26 26 O 1.20908 * 111.43902 * 0.22643 * 25 6 5 27 27 H 1.09005 * 109.47060 * 59.99850 * 1 2 3 28 28 H 1.09000 * 109.47304 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47289 * 300.00098 * 1 2 3 30 30 H 1.08997 * 109.47289 * 239.99902 * 2 1 3 31 31 H 1.09005 * 109.47060 * 120.00150 * 2 1 3 32 32 H 1.09005 * 109.46855 * 60.00017 * 3 2 1 33 33 H 1.08992 * 109.46878 * 300.00190 * 3 2 1 34 34 H 1.07999 * 128.03814 * 359.96473 * 5 4 3 35 35 H 0.97001 * 119.99727 * 359.97438 * 9 7 6 36 36 H 1.09004 * 109.46963 * 299.72135 * 10 9 7 37 37 H 1.08994 * 109.47567 * 59.72287 * 10 9 7 38 38 H 1.09004 * 109.47066 * 299.99732 * 11 10 9 39 39 H 1.09000 * 109.47665 * 59.99541 * 11 10 9 40 40 H 0.97000 * 119.99258 * 359.97438 * 12 11 10 41 41 H 1.08998 * 109.46799 * 299.99279 * 15 13 12 42 42 H 1.08994 * 109.46990 * 59.99556 * 15 13 12 43 43 H 0.97002 * 119.99926 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4424 0.0006 5 6 4.3555 1.4477 -1.0844 6 6 5.6674 1.4428 -0.5338 7 6 6.9481 1.4437 -1.2821 8 8 6.9419 1.4436 -2.4971 9 7 8.1188 1.4444 -0.6142 10 6 9.3837 1.4514 -1.3532 11 6 10.5517 1.4578 -0.3650 12 7 11.8167 1.4642 -1.1039 13 6 12.9873 1.4700 -0.4361 14 8 12.9934 1.4704 0.7767 15 6 14.2885 1.4760 -1.1964 16 16 15.6702 1.4837 -0.0272 17 6 17.0245 1.4889 -1.1543 18 1 16.8414 1.4873 -2.2186 19 6 18.3269 1.4960 -0.6742 20 7 18.5501 1.4984 0.6230 21 14 19.7627 1.5023 -1.8691 22 1 19.2477 1.4989 -3.2619 23 1 20.5848 2.7191 -1.6486 24 1 20.5972 0.2942 -1.6465 25 7 5.5158 1.4432 0.7672 26 8 4.3469 1.4430 1.0759 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9562 -0.8899 34 1 4.0710 1.4523 -2.1262 35 1 8.1237 1.4448 0.3558 36 1 9.4431 0.5617 -1.9802 37 1 9.4334 2.3416 -1.9802 38 1 10.4923 2.3475 0.2619 39 1 10.5021 0.5676 0.2620 40 1 11.8116 1.4635 -2.0739 41 1 14.3472 0.5860 -1.8229 42 1 14.3387 2.3659 -1.8236 43 1 19.4603 1.5031 0.9585 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491123025.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:23 Heat of formation + Delta-G solvation = -53.949238 kcal Electronic energy + Delta-G solvation = -24854.448211 eV Core-core repulsion = 20834.807309 eV Total energy + Delta-G solvation = -4019.640902 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -46.21184 -41.03058 -40.53337 -37.14383 -36.60789 -35.34791 -34.89722 -34.58655 -32.69057 -31.68082 -29.46127 -27.95328 -27.66712 -25.98169 -24.00581 -23.55870 -22.59878 -21.96664 -21.17677 -19.89020 -18.94119 -18.72847 -18.10828 -17.94076 -17.17886 -17.09835 -16.88272 -16.83907 -16.36012 -16.00733 -15.73385 -15.60565 -15.26912 -14.86446 -14.72607 -14.59650 -14.41176 -14.15009 -13.74491 -13.35349 -13.16310 -13.00052 -12.99017 -12.89452 -12.59894 -12.54338 -12.47361 -12.16880 -11.75005 -11.69262 -11.65285 -11.52177 -11.16139 -11.05503 -10.49071 -10.44754 -10.27903 -10.22207 -8.67058 -8.35305 -6.13146 -0.05853 0.59365 1.20849 1.40660 1.41345 1.53574 1.55974 1.65790 1.90909 1.94532 2.26547 2.36718 2.80972 2.99363 3.30726 3.39038 3.52727 3.85780 3.91928 3.97109 4.03825 4.08853 4.13114 4.27084 4.30315 4.30379 4.51720 4.61966 4.71927 4.74822 4.80085 4.81409 4.91519 4.98327 5.00366 5.29444 5.30149 5.32368 5.42347 5.49541 6.06481 6.19912 6.41389 6.72525 6.94367 7.06554 7.16920 8.74246 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.048595 B = 0.001309 C = 0.001286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.051794 B =21381.863229 C =21775.940954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.038 4.038 4 C -0.011 4.011 5 C -0.192 4.192 6 C -0.046 4.046 7 C 0.602 3.398 8 O -0.549 6.549 9 N -0.704 5.704 10 C 0.119 3.881 11 C 0.115 3.885 12 N -0.710 5.710 13 C 0.537 3.463 14 O -0.562 6.562 15 C -0.130 4.130 16 S -0.152 6.152 17 C -0.546 4.546 18 H 0.084 0.916 19 C 0.014 3.986 20 N -0.912 5.912 21 Si 0.998 3.002 22 H -0.256 1.256 23 H -0.274 1.274 24 H -0.274 1.274 25 N -0.347 5.347 26 O 0.124 5.876 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.108 0.892 33 H 0.121 0.879 34 H 0.194 0.806 35 H 0.416 0.584 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.420 0.580 41 H 0.113 0.887 42 H 0.113 0.887 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -38.784 -0.677 -5.806 39.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.076 4.076 4 C -0.074 4.074 5 C -0.214 4.214 6 C -0.204 4.204 7 C 0.387 3.613 8 O -0.425 6.425 9 N -0.357 5.357 10 C -0.005 4.005 11 C -0.010 4.010 12 N -0.365 5.365 13 C 0.323 3.677 14 O -0.440 6.440 15 C -0.281 4.281 16 S 0.076 5.924 17 C -0.694 4.694 18 H 0.102 0.898 19 C -0.190 4.190 20 N -0.548 5.548 21 Si 0.820 3.180 22 H -0.180 1.180 23 H -0.200 1.200 24 H -0.200 1.200 25 N -0.047 5.047 26 O 0.047 5.953 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.126 0.874 33 H 0.139 0.861 34 H 0.211 0.789 35 H 0.253 0.747 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.257 0.743 41 H 0.131 0.869 42 H 0.131 0.869 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -37.719 -0.676 -3.553 37.892 hybrid contribution 0.957 -0.044 -2.259 2.454 sum -36.762 -0.720 -5.812 37.226 Atomic orbital electron populations 1.21756 0.93896 1.02398 1.02845 1.21551 0.97140 0.94653 1.02713 1.20527 0.80444 0.99570 1.07022 1.25099 0.97405 1.00704 0.84146 1.22673 0.88776 1.07302 1.02691 1.23447 0.96934 1.09387 0.90628 1.16964 0.82076 0.76266 0.86033 1.90805 1.87195 1.50982 1.13526 1.45600 1.04871 1.73686 1.11526 1.21451 0.80489 1.04489 0.94036 1.21339 0.81851 1.03236 0.94548 1.45462 1.03886 1.75993 1.11205 1.20046 0.85295 0.74953 0.87422 1.90707 1.87693 1.49925 1.15702 1.23373 0.94767 1.07118 1.02890 1.85580 0.97233 1.97064 1.12571 1.23247 0.92697 1.58764 0.94672 0.89838 1.26110 1.01616 0.93715 0.97594 1.70184 1.22236 1.48098 1.14312 0.84914 0.76818 0.78056 0.78218 1.17995 1.19969 1.19963 1.74196 0.98335 1.16686 1.15483 1.84760 1.10828 1.65433 1.34247 0.91649 0.92479 0.91770 0.91667 0.91949 0.87374 0.86071 0.78873 0.74725 0.89395 0.89393 0.91005 0.91020 0.74253 0.86920 0.86923 0.91991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.28 9.91 71.98 0.71 0.43 16 2 C -0.12 -0.43 5.92 30.59 0.18 -0.25 16 3 C -0.04 -0.10 5.78 29.85 0.17 0.07 16 4 C -0.01 -0.11 6.73 25.01 0.17 0.06 16 5 C -0.19 -2.61 10.92 22.60 0.25 -2.36 16 6 C -0.05 -0.87 7.19 42.96 0.31 -0.56 16 7 C 0.60 12.81 7.85 86.93 0.68 13.49 16 8 O -0.55 -14.43 16.95 -3.73 -0.06 -14.49 16 9 N -0.70 -12.42 5.55 -465.50 -2.59 -15.01 16 10 C 0.12 1.93 5.79 86.38 0.50 2.43 16 11 C 0.11 2.31 5.79 86.38 0.50 2.81 16 12 N -0.71 -16.55 5.56 -463.06 -2.57 -19.12 16 13 C 0.54 19.06 7.85 87.66 0.69 19.75 16 14 O -0.56 -25.37 15.86 -3.04 -0.05 -25.42 16 15 C -0.13 -5.01 6.16 71.24 0.44 -4.58 16 16 S -0.15 -8.35 20.57 -56.49 -1.16 -9.51 16 17 C -0.55 -31.01 9.50 67.96 0.65 -30.36 16 18 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 19 C 0.01 0.82 5.49 84.86 0.47 1.28 16 20 N -0.91 -55.95 13.22 21.65 0.29 -55.66 16 21 Si 1.00 43.51 29.55 68.60 2.03 45.53 16 22 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 23 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 24 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 25 N -0.35 -6.43 11.84 -49.52 -0.59 -7.02 16 26 O 0.12 1.84 11.18 71.91 0.80 2.64 16 27 H 0.06 0.04 8.14 -2.38 -0.02 0.02 16 28 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 29 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 30 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.06 0.32 8.14 -2.38 -0.02 0.30 16 32 H 0.11 0.02 8.14 -2.38 -0.02 0.00 16 33 H 0.12 -0.10 8.14 -2.39 -0.02 -0.12 16 34 H 0.19 1.99 8.06 -2.91 -0.02 1.97 16 35 H 0.42 6.55 8.23 -92.71 -0.76 5.78 16 36 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 37 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 39 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.42 6.85 8.47 -92.71 -0.79 6.06 16 41 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 42 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 43 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -81.74 393.20 1.31 -80.43 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -0.50 Total: 15.39 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: 5.71 Total: 2.23 kcal Atomic # 7 Polarization: -91.35 SS G_CDS: -5.46 Total: -96.81 kcal Atomic # 8 Polarization: -37.96 SS G_CDS: 0.69 Total: -37.26 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 16 Polarization: -8.35 SS G_CDS: -1.16 Total: -9.51 kcal Total: -81.74 1.31 -80.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491123025.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.478 kcal (2) G-P(sol) polarization free energy of solvation -81.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds