Wall clock time and date at job start Sat Apr 11 2020 06:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47372 * 2 1 4 4 H 1.09000 * 109.46650 * 54.99771 * 3 2 1 5 5 C 1.52997 * 109.47452 * 175.00183 * 3 2 1 6 6 N 1.46500 * 109.47262 * 174.99884 * 5 3 2 7 7 C 1.34769 * 120.00051 * 179.97438 * 6 5 3 8 8 O 1.21683 * 120.00060 * 0.02562 * 7 6 5 9 9 C 1.46722 * 119.99961 * 180.02562 * 7 6 5 10 10 O 1.35341 * 126.64331 * 0.14526 * 9 7 6 11 11 C 1.33670 * 107.68680 * 180.26416 * 10 9 7 12 12 N 1.30625 * 109.14957 * 359.75815 * 11 10 9 13 13 C 1.33692 * 108.99356 * 359.97438 * 12 11 10 14 14 C 1.50706 * 126.26771 * 179.97438 * 13 12 11 15 15 N 1.46505 * 109.47016 * 295.00610 * 3 2 1 16 16 C 1.34776 * 119.99942 * 84.99585 * 15 3 2 17 17 O 1.21273 * 120.00243 * 359.97438 * 16 15 3 18 18 C 1.50706 * 119.99493 * 179.97438 * 16 15 3 19 19 S 1.81002 * 109.46740 * 179.97438 * 18 16 15 20 20 C 1.76201 * 99.99732 * 179.97438 * 19 18 16 21 21 H 1.07996 * 120.00556 * 0.02562 * 20 19 18 22 22 C 1.38803 * 119.99749 * 180.02562 * 20 19 18 23 23 N 1.31636 * 120.00156 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99798 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47011 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47086 * 120.00129 * 24 22 20 27 27 H 1.48500 * 109.46928 * 239.99863 * 24 22 20 28 28 H 1.08999 * 109.46790 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46911 * 299.99520 * 1 2 3 30 30 H 1.08997 * 109.47410 * 59.99490 * 1 2 3 31 31 H 1.09004 * 109.46911 * 240.00479 * 2 1 3 32 32 H 1.08995 * 109.47787 * 120.00139 * 2 1 3 33 33 H 1.09000 * 109.46849 * 54.99712 * 5 3 2 34 34 H 1.09001 * 109.46952 * 295.00312 * 5 3 2 35 35 H 0.96998 * 119.99353 * 0.02562 * 6 5 3 36 36 H 1.07996 * 125.42645 * 179.79581 * 11 10 9 37 37 H 1.08999 * 109.46995 * 90.02764 * 14 13 12 38 38 H 1.08994 * 109.46790 * 210.02451 * 14 13 12 39 39 H 1.08997 * 109.47305 * 330.02892 * 14 13 12 40 40 H 0.96995 * 119.99531 * 264.99720 * 15 3 2 41 41 H 1.08993 * 109.46972 * 299.99982 * 18 16 15 42 42 H 1.08992 * 109.47134 * 60.00414 * 18 16 15 43 43 H 0.96992 * 119.99779 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5649 1.4444 0.1257 6 7 4.0631 2.8168 0.0059 7 6 5.3856 3.0631 0.0867 8 8 6.1660 2.1454 0.2587 9 6 5.8846 4.4377 -0.0327 10 8 5.1417 5.5531 -0.2220 11 6 5.9789 6.5934 -0.2813 12 7 7.2043 6.1664 -0.1315 13 6 7.1860 4.8392 0.0287 14 6 8.3851 3.9492 0.2322 15 7 1.6524 2.0976 -1.2518 16 6 0.4351 2.6645 -1.3668 17 8 -0.3396 2.6319 -0.4343 18 6 0.0366 3.3388 -2.6544 19 16 -1.6425 3.9960 -2.4965 20 6 -1.8436 4.7085 -4.0955 21 1 -1.0433 4.6484 -4.8181 22 6 -3.0307 5.3472 -4.4263 23 7 -4.0061 5.4210 -3.5454 24 14 -3.2442 6.1019 -6.1217 25 1 -2.0103 5.8852 -6.9189 26 1 -4.3958 5.4619 -6.8070 27 1 -3.4962 7.5591 -5.9866 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 3.9954 0.8311 -0.6660 34 1 3.8499 1.0377 1.0960 35 1 3.4410 3.5484 -0.1309 36 1 5.6885 7.6230 -0.4289 37 1 8.5931 3.8581 1.2983 38 1 8.1800 2.9628 -0.1835 39 1 9.2492 4.3831 -0.2708 40 1 2.2718 2.1232 -1.9977 41 1 0.7279 4.1542 -2.8665 42 1 0.0679 2.6147 -3.4685 43 1 -4.8358 5.8669 -3.7768 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498989555.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:41 Heat of formation + Delta-G solvation = -58.200366 kcal Electronic energy + Delta-G solvation = -26836.355500 eV Core-core repulsion = 22816.530255 eV Total energy + Delta-G solvation = -4019.825245 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.80942 -40.25902 -39.41096 -36.66631 -35.71559 -34.16668 -32.50379 -32.46637 -32.02931 -29.72755 -28.77167 -27.64118 -25.53681 -24.58019 -23.31224 -21.90951 -21.60547 -20.82277 -20.44403 -18.74079 -17.84647 -17.29185 -16.90219 -16.75194 -16.56675 -16.00151 -15.37500 -15.22708 -14.92823 -14.85001 -14.47906 -14.24584 -13.67878 -13.63350 -13.52854 -13.36259 -13.22936 -13.13719 -12.59009 -12.56474 -12.36772 -11.83210 -11.53735 -11.47979 -11.29695 -11.27628 -11.11203 -11.06440 -10.85010 -10.78656 -10.53030 -9.85325 -9.70019 -9.46144 -9.23892 -9.12544 -8.98468 -8.29609 -6.55566 -6.26960 -3.97606 0.43223 2.04125 2.07161 2.68289 2.73424 2.94383 2.99984 3.17798 3.24381 3.28546 3.62188 3.67203 4.15452 4.26570 4.33605 4.38073 4.78170 4.93388 5.03908 5.06073 5.08648 5.09963 5.15698 5.29942 5.32339 5.37517 5.47757 5.54216 5.57354 5.71021 5.77598 5.80876 5.88738 5.96020 6.01628 6.07031 6.17663 6.49879 6.57851 6.89083 7.20137 7.54815 7.57466 7.61123 8.30379 8.50494 9.18897 10.80439 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010408 B = 0.002751 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2689.585628 B =10176.154525 C =12376.203760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.129 4.129 3 C 0.134 3.866 4 H 0.097 0.903 5 C 0.112 3.888 6 N -0.716 5.716 7 C 0.611 3.389 8 O -0.515 6.515 9 C -0.122 4.122 10 O -0.188 6.188 11 C 0.210 3.790 12 N -0.496 5.496 13 C 0.082 3.918 14 C -0.082 4.082 15 N -0.737 5.737 16 C 0.533 3.467 17 O -0.507 6.507 18 C -0.155 4.155 19 S -0.058 6.058 20 C -0.535 4.535 21 H 0.073 0.927 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.046 0.954 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.411 0.589 36 H 0.259 0.741 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.077 0.923 40 H 0.398 0.602 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.040 -4.993 7.350 22.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.168 4.168 3 C 0.028 3.972 4 H 0.115 0.885 5 C -0.011 4.011 6 N -0.367 5.367 7 C 0.397 3.603 8 O -0.393 6.393 9 C -0.177 4.177 10 O -0.074 6.074 11 C -0.015 4.015 12 N -0.225 5.225 13 C -0.042 4.042 14 C -0.139 4.139 15 N -0.393 5.393 16 C 0.319 3.681 17 O -0.381 6.381 18 C -0.306 4.306 19 S 0.169 5.831 20 C -0.684 4.684 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.205 1.205 27 H -0.206 1.206 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.106 0.894 35 H 0.247 0.753 36 H 0.274 0.726 37 H 0.101 0.899 38 H 0.114 0.886 39 H 0.096 0.904 40 H 0.232 0.768 41 H 0.106 0.894 42 H 0.107 0.893 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 20.539 -5.273 9.075 23.066 hybrid contribution 0.036 0.810 -2.675 2.795 sum 20.576 -4.463 6.400 22.005 Atomic orbital electron populations 1.21805 0.93918 1.00797 1.03891 1.21877 0.97894 0.94725 1.02282 1.21259 0.92009 0.94968 0.88938 0.88499 1.21806 0.93156 0.82501 1.03666 1.45890 1.06913 1.10877 1.73046 1.16265 0.82633 0.84238 0.77167 1.90865 1.55891 1.42553 1.49996 1.22834 0.91328 0.87231 1.16282 1.84533 1.39285 1.15601 1.67970 1.28443 0.82580 0.94315 0.96128 1.70392 1.22763 1.10398 1.18995 1.22102 0.94472 0.90326 0.97264 1.20409 0.92375 0.97814 1.03308 1.46136 1.17530 1.59556 1.16076 1.20267 0.80733 0.77431 0.89622 1.90722 1.50215 1.57086 1.40029 1.23548 1.07114 1.02822 0.97084 1.85381 1.06267 1.70876 1.20600 1.22899 1.03941 1.42012 0.99522 0.90924 1.24994 0.94846 0.95551 0.98185 1.70021 1.05005 1.41028 1.34195 0.86124 0.78312 0.78793 0.82315 1.19621 1.20541 1.20554 0.93504 0.91973 0.91721 0.91612 0.91077 0.90228 0.89440 0.75332 0.72586 0.89932 0.88615 0.90381 0.76784 0.89352 0.89299 0.92207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 8.51 37.16 0.32 -1.55 16 2 C -0.13 -1.21 5.61 -26.73 -0.15 -1.36 16 3 C 0.13 1.29 2.42 -67.93 -0.16 1.13 16 4 H 0.10 1.10 7.58 -51.93 -0.39 0.71 16 5 C 0.11 0.91 5.23 -4.04 -0.02 0.89 16 6 N -0.72 -6.51 5.38 -61.61 -0.33 -6.84 16 7 C 0.61 6.56 7.79 -12.84 -0.10 6.46 16 8 O -0.52 -6.39 14.79 5.20 0.08 -6.31 16 9 C -0.12 -1.29 7.18 -36.84 -0.26 -1.56 16 10 O -0.19 -1.80 10.57 4.42 0.05 -1.76 16 11 C 0.21 1.63 13.21 52.25 0.69 2.32 16 12 N -0.50 -5.08 11.26 -10.88 -0.12 -5.20 16 13 C 0.08 0.87 7.16 -82.46 -0.59 0.28 16 14 C -0.08 -0.70 9.88 36.01 0.36 -0.35 16 15 N -0.74 -8.24 4.47 -53.80 -0.24 -8.48 16 16 C 0.53 8.68 6.42 -10.98 -0.07 8.61 16 17 O -0.51 -10.01 13.00 5.56 0.07 -9.94 16 18 C -0.16 -2.89 6.16 36.01 0.22 -2.67 16 19 S -0.06 -1.49 20.57 -107.50 -2.21 -3.71 16 20 C -0.54 -14.81 9.50 30.94 0.29 -14.52 16 21 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 22 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 23 N -0.87 -25.60 13.22 55.49 0.73 -24.86 16 24 Si 0.92 20.98 29.55 -169.99 -5.02 15.96 16 25 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.87 7.85 -51.93 -0.41 0.46 16 30 H 0.06 1.01 5.64 -51.93 -0.29 0.72 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.41 3.75 7.93 -40.82 -0.32 3.43 16 36 H 0.26 0.68 8.06 -52.49 -0.42 0.26 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.10 0.87 6.45 -51.93 -0.33 0.54 16 39 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.40 3.64 8.60 -40.82 -0.35 3.29 16 41 H 0.09 1.52 8.14 -51.92 -0.42 1.10 16 42 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 43 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 380.19 15.07 5.73 5.73 Total: -1.00 -35.14 380.19 -6.73 -41.86 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -5.88 Total: 3.91 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: 0.42 Total: -0.37 kcal Atomic # 7 Polarization: -45.42 SS G_CDS: 0.04 Total: -45.38 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: 0.20 Total: -18.01 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: -1.49 SS G_CDS: -2.21 Total: -3.71 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.14 -6.73 -41.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498989555.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.337 kcal (2) G-P(sol) polarization free energy of solvation -35.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds