Wall clock time and date at job start Sat Apr 11 2020 06:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47372 * 2 1 4 4 H 1.09000 * 109.46650 * 54.99771 * 3 2 1 5 5 C 1.52997 * 109.47452 * 175.00183 * 3 2 1 6 6 N 1.46500 * 109.47262 * 174.99884 * 5 3 2 7 7 C 1.34769 * 120.00051 * 179.97438 * 6 5 3 8 8 O 1.21683 * 120.00060 * 0.02562 * 7 6 5 9 9 C 1.46722 * 119.99961 * 180.02562 * 7 6 5 10 10 O 1.35341 * 126.64331 * 0.14526 * 9 7 6 11 11 C 1.33670 * 107.68680 * 180.26416 * 10 9 7 12 12 N 1.30625 * 109.14957 * 359.75815 * 11 10 9 13 13 C 1.33692 * 108.99356 * 359.97438 * 12 11 10 14 14 C 1.50706 * 126.26771 * 179.97438 * 13 12 11 15 15 N 1.46505 * 109.47016 * 295.00610 * 3 2 1 16 16 C 1.34776 * 119.99942 * 84.99585 * 15 3 2 17 17 O 1.21273 * 120.00243 * 359.97438 * 16 15 3 18 18 C 1.50706 * 119.99493 * 179.97438 * 16 15 3 19 19 S 1.81002 * 109.46740 * 179.97438 * 18 16 15 20 20 C 1.76201 * 99.99732 * 179.97438 * 19 18 16 21 21 H 1.07996 * 120.00556 * 0.02562 * 20 19 18 22 22 C 1.38803 * 119.99749 * 180.02562 * 20 19 18 23 23 N 1.31636 * 120.00156 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99798 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47011 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47086 * 120.00129 * 24 22 20 27 27 H 1.48500 * 109.46928 * 239.99863 * 24 22 20 28 28 H 1.08999 * 109.46790 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46911 * 299.99520 * 1 2 3 30 30 H 1.08997 * 109.47410 * 59.99490 * 1 2 3 31 31 H 1.09004 * 109.46911 * 240.00479 * 2 1 3 32 32 H 1.08995 * 109.47787 * 120.00139 * 2 1 3 33 33 H 1.09000 * 109.46849 * 54.99712 * 5 3 2 34 34 H 1.09001 * 109.46952 * 295.00312 * 5 3 2 35 35 H 0.96998 * 119.99353 * 0.02562 * 6 5 3 36 36 H 1.07996 * 125.42645 * 179.79581 * 11 10 9 37 37 H 1.08999 * 109.46995 * 90.02764 * 14 13 12 38 38 H 1.08994 * 109.46790 * 210.02451 * 14 13 12 39 39 H 1.08997 * 109.47305 * 330.02892 * 14 13 12 40 40 H 0.96995 * 119.99531 * 264.99720 * 15 3 2 41 41 H 1.08993 * 109.46972 * 299.99982 * 18 16 15 42 42 H 1.08992 * 109.47134 * 60.00414 * 18 16 15 43 43 H 0.96992 * 119.99779 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5649 1.4444 0.1257 6 7 4.0631 2.8168 0.0059 7 6 5.3856 3.0631 0.0867 8 8 6.1660 2.1454 0.2587 9 6 5.8846 4.4377 -0.0327 10 8 5.1417 5.5531 -0.2220 11 6 5.9789 6.5934 -0.2813 12 7 7.2043 6.1664 -0.1315 13 6 7.1860 4.8392 0.0287 14 6 8.3851 3.9492 0.2322 15 7 1.6524 2.0976 -1.2518 16 6 0.4351 2.6645 -1.3668 17 8 -0.3396 2.6319 -0.4343 18 6 0.0366 3.3388 -2.6544 19 16 -1.6425 3.9960 -2.4965 20 6 -1.8436 4.7085 -4.0955 21 1 -1.0433 4.6484 -4.8181 22 6 -3.0307 5.3472 -4.4263 23 7 -4.0061 5.4210 -3.5454 24 14 -3.2442 6.1019 -6.1217 25 1 -2.0103 5.8852 -6.9189 26 1 -4.3958 5.4619 -6.8070 27 1 -3.4962 7.5591 -5.9866 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 3.9954 0.8311 -0.6660 34 1 3.8499 1.0377 1.0960 35 1 3.4410 3.5484 -0.1309 36 1 5.6885 7.6230 -0.4289 37 1 8.5931 3.8581 1.2983 38 1 8.1800 2.9628 -0.1835 39 1 9.2492 4.3831 -0.2708 40 1 2.2718 2.1232 -1.9977 41 1 0.7279 4.1542 -2.8665 42 1 0.0679 2.6147 -3.4685 43 1 -4.8358 5.8669 -3.7768 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498989555.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:40 Heat of formation + Delta-G solvation = -86.665539 kcal Electronic energy + Delta-G solvation = -26837.589843 eV Core-core repulsion = 22816.530255 eV Total energy + Delta-G solvation = -4021.059587 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.49939 -41.23274 -40.43875 -37.66547 -36.45119 -35.02600 -34.57920 -33.60561 -32.73140 -30.84868 -29.83312 -28.45685 -27.64161 -25.34762 -24.06300 -22.63228 -22.58562 -21.69626 -21.48630 -19.89907 -19.38013 -18.05225 -17.89256 -17.63835 -17.43856 -17.02169 -16.87689 -16.58533 -16.19652 -15.80809 -15.62253 -15.28273 -14.89703 -14.62165 -14.60244 -14.33308 -14.23156 -14.05262 -13.87541 -13.50136 -13.24920 -13.15292 -12.99867 -12.90010 -12.62420 -12.48465 -12.18640 -12.16715 -12.01695 -11.76501 -11.68554 -11.32870 -11.15600 -10.85507 -10.43948 -10.25197 -10.06922 -9.94705 -8.63964 -8.34845 -6.11259 -0.28363 1.27841 1.35879 1.39246 1.40605 1.47613 1.58104 1.66601 1.90816 2.03409 2.25976 2.32183 2.99588 3.11952 3.33046 3.49342 3.64540 3.66355 3.97837 4.00757 4.13409 4.32514 4.38844 4.40478 4.41556 4.52067 4.55629 4.63364 4.68012 4.80638 4.83977 4.90903 4.98740 5.07307 5.14952 5.21291 5.29359 5.42556 5.49541 5.54601 6.13480 6.20128 6.49688 6.50706 6.83779 7.07325 7.28525 8.74276 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010408 B = 0.002751 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2689.585628 B =10176.154525 C =12376.203760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.122 4.122 3 C 0.139 3.861 4 H 0.081 0.919 5 C 0.121 3.879 6 N -0.710 5.710 7 C 0.612 3.388 8 O -0.536 6.536 9 C -0.143 4.143 10 O -0.196 6.196 11 C 0.227 3.773 12 N -0.525 5.525 13 C 0.073 3.927 14 C -0.080 4.080 15 N -0.713 5.713 16 C 0.539 3.461 17 O -0.546 6.546 18 C -0.133 4.133 19 S -0.143 6.143 20 C -0.545 4.545 21 H 0.080 0.920 22 C 0.014 3.986 23 N -0.910 5.910 24 Si 0.995 3.005 25 H -0.258 1.258 26 H -0.275 1.275 27 H -0.274 1.274 28 H 0.057 0.943 29 H 0.041 0.959 30 H 0.032 0.968 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.411 0.589 36 H 0.302 0.698 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.413 0.587 41 H 0.107 0.893 42 H 0.103 0.897 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.056 -5.065 6.251 24.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.161 4.161 3 C 0.034 3.966 4 H 0.099 0.901 5 C -0.003 4.003 6 N -0.361 5.361 7 C 0.399 3.601 8 O -0.416 6.416 9 C -0.197 4.197 10 O -0.082 6.082 11 C 0.002 3.998 12 N -0.254 5.254 13 C -0.051 4.051 14 C -0.136 4.136 15 N -0.368 5.368 16 C 0.325 3.675 17 O -0.423 6.423 18 C -0.284 4.284 19 S 0.084 5.916 20 C -0.693 4.693 21 H 0.098 0.902 22 C -0.191 4.191 23 N -0.547 5.547 24 Si 0.818 3.182 25 H -0.181 1.181 26 H -0.201 1.201 27 H -0.199 1.199 28 H 0.076 0.924 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.100 0.900 32 H 0.116 0.884 33 H 0.111 0.889 34 H 0.117 0.883 35 H 0.247 0.753 36 H 0.317 0.683 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.105 0.895 40 H 0.249 0.751 41 H 0.125 0.875 42 H 0.122 0.878 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 22.604 -5.369 7.968 24.561 hybrid contribution -0.505 0.825 -2.272 2.469 sum 22.098 -4.544 5.697 23.269 Atomic orbital electron populations 1.21741 0.96507 1.00653 1.01301 1.21854 0.95291 0.94595 1.04379 1.21308 0.93130 0.94887 0.87229 0.90103 1.21805 0.91369 0.82210 1.04874 1.45866 1.06464 1.11286 1.72506 1.16277 0.82783 0.84180 0.76900 1.90849 1.56380 1.43161 1.51182 1.22811 0.91526 0.87571 1.17841 1.84536 1.39600 1.15778 1.68275 1.29522 0.81762 0.95334 0.93142 1.70416 1.24115 1.10327 1.20545 1.22441 0.95022 0.90844 0.96779 1.20422 0.92196 0.97238 1.03792 1.45848 1.15769 1.57880 1.17263 1.19839 0.81872 0.77589 0.88200 1.90723 1.51785 1.58824 1.40948 1.23393 1.02265 1.03642 0.99107 1.85518 1.12875 1.71907 1.21318 1.23229 1.04388 1.41886 0.99791 0.90160 1.26080 0.94422 0.95969 1.02605 1.70178 1.05692 1.42202 1.36642 0.84951 0.78697 0.77769 0.76830 1.18132 1.20075 1.19939 0.92393 0.93972 0.94906 0.90009 0.88445 0.88870 0.88268 0.75314 0.68276 0.89263 0.89271 0.89456 0.75071 0.87508 0.87829 0.92041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.62 8.51 71.98 0.61 -3.01 16 2 C -0.12 -2.02 5.61 30.60 0.17 -1.85 16 3 C 0.14 2.43 2.42 44.99 0.11 2.54 16 4 H 0.08 1.77 7.58 -2.39 -0.02 1.75 16 5 C 0.12 1.64 5.23 86.38 0.45 2.09 16 6 N -0.71 -11.64 5.38 -467.06 -2.51 -14.16 16 7 C 0.61 12.35 7.79 86.46 0.67 13.02 16 8 O -0.54 -12.64 14.79 -4.29 -0.06 -12.70 16 9 C -0.14 -2.88 7.18 24.04 0.17 -2.71 16 10 O -0.20 -3.45 10.57 -7.11 -0.08 -3.53 16 11 C 0.23 3.03 13.21 130.42 1.72 4.75 16 12 N -0.52 -10.00 11.26 -303.11 -3.41 -13.41 16 13 C 0.07 1.47 7.16 41.83 0.30 1.77 16 14 C -0.08 -1.31 9.88 71.24 0.70 -0.60 16 15 N -0.71 -14.70 4.47 -442.52 -1.98 -16.68 16 16 C 0.54 17.34 6.42 87.66 0.56 17.90 16 17 O -0.55 -22.07 13.00 -3.01 -0.04 -22.11 16 18 C -0.13 -4.87 6.16 71.24 0.44 -4.43 16 19 S -0.14 -7.61 20.57 -56.49 -1.16 -8.77 16 20 C -0.55 -30.29 9.50 67.96 0.65 -29.65 16 21 H 0.08 4.17 7.80 -2.91 -0.02 4.15 16 22 C 0.01 0.78 5.49 84.86 0.47 1.25 16 23 N -0.91 -54.89 13.22 21.65 0.29 -54.60 16 24 Si 1.00 42.81 29.55 68.60 2.03 44.84 16 25 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 26 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 27 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 28 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.04 1.20 7.85 -2.38 -0.02 1.18 16 30 H 0.03 1.02 5.64 -2.39 -0.01 1.01 16 31 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 32 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.41 6.85 7.93 -92.71 -0.74 6.12 16 36 H 0.30 0.59 8.06 -2.91 -0.02 0.57 16 37 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.09 1.58 6.45 -2.39 -0.02 1.57 16 39 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.41 6.40 8.60 -92.71 -0.80 5.61 16 41 H 0.11 3.52 8.14 -2.40 -0.02 3.50 16 42 H 0.10 3.50 8.14 -2.40 -0.02 3.48 16 43 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -79.30 380.19 -0.37 -79.67 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: -0.47 Total: 20.37 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: 7.03 Total: 1.07 kcal Atomic # 7 Polarization: -91.23 SS G_CDS: -7.62 Total: -98.85 kcal Atomic # 8 Polarization: -38.16 SS G_CDS: -0.18 Total: -38.34 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Atomic # 16 Polarization: -7.61 SS G_CDS: -1.16 Total: -8.77 kcal Total: -79.30 -0.37 -79.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498989555.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.993 kcal (2) G-P(sol) polarization free energy of solvation -79.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds