Wall clock time and date at job start Sat Apr 11 2020 06:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46992 * 2 1 4 4 H 1.09001 * 109.47375 * 305.00364 * 3 2 1 5 5 C 1.53006 * 109.47164 * 185.00330 * 3 2 1 6 6 N 1.46496 * 109.47070 * 185.00131 * 5 3 2 7 7 C 1.34775 * 119.99828 * 180.02562 * 6 5 3 8 8 O 1.21683 * 120.00184 * 359.97438 * 7 6 5 9 9 C 1.46721 * 120.00044 * 180.02562 * 7 6 5 10 10 O 1.35345 * 126.64716 * 359.68605 * 9 7 6 11 11 C 1.33662 * 107.68983 * 179.87386 * 10 9 7 12 12 N 1.30616 * 109.15318 * 0.39960 * 11 10 9 13 13 C 1.33698 * 108.99642 * 359.74621 * 12 11 10 14 14 C 1.50699 * 126.27732 * 179.97438 * 13 12 11 15 15 N 1.46504 * 109.47417 * 65.00416 * 3 2 1 16 16 C 1.34774 * 119.99618 * 275.00242 * 15 3 2 17 17 O 1.21281 * 120.00442 * 359.97438 * 16 15 3 18 18 C 1.50698 * 119.99927 * 179.97438 * 16 15 3 19 19 S 1.81005 * 109.47336 * 179.97438 * 18 16 15 20 20 C 1.76203 * 99.99914 * 179.97438 * 19 18 16 21 21 H 1.08004 * 120.00239 * 359.97438 * 20 19 18 22 22 C 1.38798 * 119.99809 * 179.97438 * 20 19 18 23 23 N 1.31637 * 119.99938 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00159 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.46980 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47148 * 119.99597 * 24 22 20 27 27 H 1.48497 * 109.47519 * 240.00108 * 24 22 20 28 28 H 1.08998 * 109.46717 * 299.99642 * 1 2 3 29 29 H 1.09000 * 109.46966 * 59.99762 * 1 2 3 30 30 H 1.08996 * 109.47264 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46717 * 240.00358 * 2 1 3 32 32 H 1.09002 * 109.47471 * 120.00258 * 2 1 3 33 33 H 1.09004 * 109.46579 * 304.99685 * 5 3 2 34 34 H 1.08992 * 109.47046 * 64.99868 * 5 3 2 35 35 H 0.97001 * 120.00404 * 359.97438 * 6 5 3 36 36 H 1.07996 * 125.42644 * 180.14201 * 11 10 9 37 37 H 1.09000 * 109.46936 * 270.03332 * 14 13 12 38 38 H 1.09004 * 109.46602 * 30.02824 * 14 13 12 39 39 H 1.09000 * 109.47345 * 150.02750 * 14 13 12 40 40 H 0.96990 * 120.00057 * 94.99539 * 15 3 2 41 41 H 1.09005 * 109.46834 * 299.99458 * 18 16 15 42 42 H 1.08998 * 109.47729 * 59.99510 * 18 16 15 43 43 H 0.96993 * 119.99551 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5649 1.4444 -0.1258 6 7 4.0630 2.8168 -0.0060 7 6 5.3856 3.0631 -0.0870 8 8 6.1660 2.1454 -0.2591 9 6 5.8846 4.4375 0.0336 10 8 5.1417 5.5532 0.2209 11 6 5.9788 6.5936 0.2792 12 7 7.2039 6.1669 0.1272 13 6 7.1863 4.8390 -0.0272 14 6 8.3851 3.9491 -0.2319 15 7 1.6525 2.0975 1.2519 16 6 0.4352 2.6643 1.3670 17 8 -0.3393 2.6326 0.4343 18 6 0.0363 3.3376 2.6549 19 16 -1.6421 3.9964 2.4967 20 6 -1.8443 4.7061 4.0968 21 1 -1.0446 4.6440 4.8201 22 6 -3.0312 5.3450 4.4277 23 7 -4.0061 5.4203 3.5463 24 14 -3.2459 6.0967 6.1241 25 1 -2.0128 5.8776 6.9223 26 1 -3.4965 7.5544 5.9915 27 1 -4.3985 5.4564 6.8072 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.9954 0.8311 0.6659 34 1 3.8498 1.0378 -1.0961 35 1 3.4410 3.5484 0.1308 36 1 5.6882 7.6236 0.4242 37 1 8.5895 3.8545 -1.2984 38 1 9.2507 4.3854 0.2666 39 1 8.1823 2.9639 0.1880 40 1 2.2720 2.1231 1.9977 41 1 0.0674 2.6129 3.4685 42 1 0.7277 4.1529 2.8680 43 1 -4.8356 5.8664 3.7777 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498989556.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:45 Heat of formation + Delta-G solvation = -58.230564 kcal Electronic energy + Delta-G solvation = -26836.043912 eV Core-core repulsion = 22816.217358 eV Total energy + Delta-G solvation = -4019.826554 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.80955 -40.25843 -39.41005 -36.66556 -35.71538 -34.16654 -32.50387 -32.46647 -32.02992 -29.72734 -28.77136 -27.64089 -25.53666 -24.58040 -23.31211 -21.90944 -21.60528 -20.82231 -20.44428 -18.74050 -17.84636 -17.29194 -16.90206 -16.75236 -16.56642 -16.00148 -15.37461 -15.22651 -14.92795 -14.84987 -14.47902 -14.24517 -13.67968 -13.63372 -13.52871 -13.36302 -13.22907 -13.13691 -12.58938 -12.56458 -12.36772 -11.83161 -11.53738 -11.47916 -11.29662 -11.27699 -11.11217 -11.06413 -10.85049 -10.78624 -10.53086 -9.85310 -9.69990 -9.46146 -9.23876 -9.12543 -8.98483 -8.29585 -6.55545 -6.26958 -3.97610 0.43219 2.04158 2.07149 2.68261 2.73450 2.94355 2.99965 3.17813 3.24392 3.28531 3.62194 3.67186 4.15465 4.26533 4.33611 4.38074 4.78192 4.93404 5.03889 5.06101 5.08662 5.09979 5.15706 5.29958 5.32309 5.37478 5.47714 5.54212 5.57339 5.71018 5.77599 5.80848 5.88750 5.95956 6.01612 6.06988 6.17649 6.49866 6.57822 6.89074 7.20142 7.54795 7.57467 7.61130 8.30375 8.50487 9.18907 10.80448 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010412 B = 0.002750 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2688.624840 B =10179.050950 C =12376.967434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.129 4.129 3 C 0.134 3.866 4 H 0.097 0.903 5 C 0.112 3.888 6 N -0.716 5.716 7 C 0.611 3.389 8 O -0.515 6.515 9 C -0.122 4.122 10 O -0.188 6.188 11 C 0.211 3.789 12 N -0.496 5.496 13 C 0.082 3.918 14 C -0.082 4.082 15 N -0.737 5.737 16 C 0.533 3.467 17 O -0.507 6.507 18 C -0.155 4.155 19 S -0.058 6.058 20 C -0.535 4.535 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.046 0.954 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.411 0.589 36 H 0.259 0.741 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.095 0.905 40 H 0.398 0.602 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.042 -4.992 -7.350 22.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.168 4.168 3 C 0.028 3.972 4 H 0.115 0.885 5 C -0.011 4.011 6 N -0.367 5.367 7 C 0.397 3.603 8 O -0.393 6.393 9 C -0.177 4.177 10 O -0.074 6.074 11 C -0.015 4.015 12 N -0.226 5.226 13 C -0.042 4.042 14 C -0.139 4.139 15 N -0.393 5.393 16 C 0.319 3.681 17 O -0.381 6.381 18 C -0.306 4.306 19 S 0.169 5.831 20 C -0.684 4.684 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.205 1.205 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.106 0.894 35 H 0.247 0.753 36 H 0.274 0.726 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.114 0.886 40 H 0.232 0.768 41 H 0.107 0.893 42 H 0.106 0.894 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 20.542 -5.270 -9.080 23.069 hybrid contribution 0.035 0.805 2.679 2.797 sum 20.577 -4.464 -6.402 22.007 Atomic orbital electron populations 1.21805 0.93919 1.00800 1.03889 1.21876 0.97894 0.94726 1.02283 1.21259 0.92011 0.94966 0.88936 0.88497 1.21806 0.93157 0.82501 1.03663 1.45891 1.06916 1.10875 1.73048 1.16267 0.82634 0.84236 0.77168 1.90866 1.55893 1.42552 1.49992 1.22839 0.91310 0.87221 1.16308 1.84532 1.39280 1.15588 1.67991 1.28438 0.82594 0.94311 0.96119 1.70390 1.22772 1.10384 1.19007 1.22104 0.94473 0.90312 0.97272 1.20407 0.92376 0.97802 1.03306 1.46133 1.17527 1.59556 1.16076 1.20267 0.80733 0.77424 0.89630 1.90724 1.50228 1.57077 1.40031 1.23550 1.07116 1.02826 0.97079 1.85382 1.06351 1.70910 1.20483 1.22900 1.03986 1.42047 0.99435 0.90925 1.24992 0.94846 0.95551 0.98193 1.70023 1.05028 1.41010 1.34191 0.86123 0.78312 0.78784 0.82317 1.19622 1.20555 1.20542 0.91725 0.91972 0.93503 0.91077 0.91610 0.90229 0.89442 0.75331 0.72587 0.89928 0.90383 0.88626 0.76783 0.89295 0.89354 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 8.52 37.16 0.32 -1.55 16 2 C -0.13 -1.21 5.61 -26.73 -0.15 -1.36 16 3 C 0.13 1.29 2.42 -67.93 -0.16 1.13 16 4 H 0.10 1.10 7.58 -51.93 -0.39 0.71 16 5 C 0.11 0.91 5.23 -4.04 -0.02 0.89 16 6 N -0.72 -6.51 5.38 -61.61 -0.33 -6.84 16 7 C 0.61 6.56 7.79 -12.83 -0.10 6.46 16 8 O -0.52 -6.39 14.79 5.20 0.08 -6.31 16 9 C -0.12 -1.29 7.18 -36.84 -0.26 -1.56 16 10 O -0.19 -1.80 10.57 4.43 0.05 -1.76 16 11 C 0.21 1.63 13.21 52.25 0.69 2.32 16 12 N -0.50 -5.08 11.26 -10.88 -0.12 -5.20 16 13 C 0.08 0.87 7.16 -82.46 -0.59 0.28 16 14 C -0.08 -0.70 9.87 36.01 0.36 -0.35 16 15 N -0.74 -8.24 4.47 -53.80 -0.24 -8.48 16 16 C 0.53 8.69 6.42 -10.99 -0.07 8.61 16 17 O -0.51 -10.01 13.00 5.56 0.07 -9.94 16 18 C -0.16 -2.89 6.16 36.00 0.22 -2.67 16 19 S -0.06 -1.49 20.57 -107.50 -2.21 -3.71 16 20 C -0.54 -14.81 9.50 30.94 0.29 -14.51 16 21 H 0.07 1.91 7.80 -52.48 -0.41 1.50 16 22 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 23 N -0.87 -25.60 13.22 55.49 0.73 -24.86 16 24 Si 0.92 20.98 29.55 -169.99 -5.02 15.96 16 25 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 H 0.06 1.01 5.65 -51.93 -0.29 0.71 16 29 H 0.06 0.87 7.85 -51.93 -0.41 0.46 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.41 3.75 7.93 -40.82 -0.32 3.43 16 36 H 0.26 0.68 8.06 -52.49 -0.42 0.26 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.10 0.87 6.47 -51.93 -0.34 0.53 16 40 H 0.40 3.64 8.60 -40.82 -0.35 3.29 16 41 H 0.09 1.56 8.14 -51.91 -0.42 1.14 16 42 H 0.09 1.52 8.14 -51.92 -0.42 1.10 16 43 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 380.21 15.07 5.73 5.73 Total: -1.00 -35.14 380.21 -6.73 -41.87 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -5.88 Total: 3.91 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: 0.42 Total: -0.36 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: 0.04 Total: -45.39 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: 0.20 Total: -18.01 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: -1.49 SS G_CDS: -2.21 Total: -3.71 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.14 -6.73 -41.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498989556.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.364 kcal (2) G-P(sol) polarization free energy of solvation -35.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds