Wall clock time and date at job start Sat Apr 11 2020 06:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46992 * 2 1 4 4 H 1.09001 * 109.47375 * 305.00364 * 3 2 1 5 5 C 1.53006 * 109.47164 * 185.00330 * 3 2 1 6 6 N 1.46496 * 109.47070 * 185.00131 * 5 3 2 7 7 C 1.34775 * 119.99828 * 180.02562 * 6 5 3 8 8 O 1.21683 * 120.00184 * 359.97438 * 7 6 5 9 9 C 1.46721 * 120.00044 * 180.02562 * 7 6 5 10 10 O 1.35345 * 126.64716 * 359.68605 * 9 7 6 11 11 C 1.33662 * 107.68983 * 179.87386 * 10 9 7 12 12 N 1.30616 * 109.15318 * 0.39960 * 11 10 9 13 13 C 1.33698 * 108.99642 * 359.74621 * 12 11 10 14 14 C 1.50699 * 126.27732 * 179.97438 * 13 12 11 15 15 N 1.46504 * 109.47417 * 65.00416 * 3 2 1 16 16 C 1.34774 * 119.99618 * 275.00242 * 15 3 2 17 17 O 1.21281 * 120.00442 * 359.97438 * 16 15 3 18 18 C 1.50698 * 119.99927 * 179.97438 * 16 15 3 19 19 S 1.81005 * 109.47336 * 179.97438 * 18 16 15 20 20 C 1.76203 * 99.99914 * 179.97438 * 19 18 16 21 21 H 1.08004 * 120.00239 * 359.97438 * 20 19 18 22 22 C 1.38798 * 119.99809 * 179.97438 * 20 19 18 23 23 N 1.31637 * 119.99938 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00159 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.46980 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47148 * 119.99597 * 24 22 20 27 27 H 1.48497 * 109.47519 * 240.00108 * 24 22 20 28 28 H 1.08998 * 109.46717 * 299.99642 * 1 2 3 29 29 H 1.09000 * 109.46966 * 59.99762 * 1 2 3 30 30 H 1.08996 * 109.47264 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46717 * 240.00358 * 2 1 3 32 32 H 1.09002 * 109.47471 * 120.00258 * 2 1 3 33 33 H 1.09004 * 109.46579 * 304.99685 * 5 3 2 34 34 H 1.08992 * 109.47046 * 64.99868 * 5 3 2 35 35 H 0.97001 * 120.00404 * 359.97438 * 6 5 3 36 36 H 1.07996 * 125.42644 * 180.14201 * 11 10 9 37 37 H 1.09000 * 109.46936 * 270.03332 * 14 13 12 38 38 H 1.09004 * 109.46602 * 30.02824 * 14 13 12 39 39 H 1.09000 * 109.47345 * 150.02750 * 14 13 12 40 40 H 0.96990 * 120.00057 * 94.99539 * 15 3 2 41 41 H 1.09005 * 109.46834 * 299.99458 * 18 16 15 42 42 H 1.08998 * 109.47729 * 59.99510 * 18 16 15 43 43 H 0.96993 * 119.99551 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5649 1.4444 -0.1258 6 7 4.0630 2.8168 -0.0060 7 6 5.3856 3.0631 -0.0870 8 8 6.1660 2.1454 -0.2591 9 6 5.8846 4.4375 0.0336 10 8 5.1417 5.5532 0.2209 11 6 5.9788 6.5936 0.2792 12 7 7.2039 6.1669 0.1272 13 6 7.1863 4.8390 -0.0272 14 6 8.3851 3.9491 -0.2319 15 7 1.6525 2.0975 1.2519 16 6 0.4352 2.6643 1.3670 17 8 -0.3393 2.6326 0.4343 18 6 0.0363 3.3376 2.6549 19 16 -1.6421 3.9964 2.4967 20 6 -1.8443 4.7061 4.0968 21 1 -1.0446 4.6440 4.8201 22 6 -3.0312 5.3450 4.4277 23 7 -4.0061 5.4203 3.5463 24 14 -3.2459 6.0967 6.1241 25 1 -2.0128 5.8776 6.9223 26 1 -3.4965 7.5544 5.9915 27 1 -4.3985 5.4564 6.8072 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.9954 0.8311 0.6659 34 1 3.8498 1.0378 -1.0961 35 1 3.4410 3.5484 0.1308 36 1 5.6882 7.6236 0.4242 37 1 8.5895 3.8545 -1.2984 38 1 9.2507 4.3854 0.2666 39 1 8.1823 2.9639 0.1880 40 1 2.2720 2.1231 1.9977 41 1 0.0674 2.6129 3.4685 42 1 0.7277 4.1529 2.8680 43 1 -4.8356 5.8664 3.7777 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498989556.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:44 Heat of formation + Delta-G solvation = -86.698427 kcal Electronic energy + Delta-G solvation = -26837.278371 eV Core-core repulsion = 22816.217358 eV Total energy + Delta-G solvation = -4021.061014 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.49949 -41.23211 -40.43784 -37.66490 -36.45095 -35.02590 -34.57941 -33.60562 -32.73195 -30.84855 -29.83271 -28.45661 -27.64152 -25.34786 -24.06285 -22.63215 -22.58546 -21.69595 -21.48644 -19.89895 -19.37987 -18.05218 -17.89259 -17.63832 -17.43854 -17.02163 -16.87682 -16.58559 -16.19575 -15.80764 -15.62192 -15.28270 -14.89703 -14.62168 -14.60238 -14.33353 -14.23223 -14.05278 -13.87538 -13.50101 -13.24777 -13.15270 -12.99890 -12.90020 -12.62385 -12.48478 -12.18516 -12.16683 -12.01812 -11.76544 -11.68539 -11.32925 -11.15601 -10.85514 -10.43926 -10.25182 -10.06942 -9.94697 -8.63950 -8.34850 -6.11269 -0.28369 1.27842 1.35909 1.39243 1.40618 1.47610 1.58087 1.66558 1.90799 2.03414 2.25981 2.32193 2.99596 3.11940 3.33046 3.49293 3.64550 3.66369 3.97856 4.00777 4.13420 4.32469 4.38851 4.40487 4.41548 4.52026 4.55587 4.63384 4.67970 4.80639 4.83964 4.90900 4.98726 5.07291 5.14974 5.21293 5.29303 5.42524 5.49515 5.54588 6.13465 6.20123 6.49692 6.50712 6.83783 7.07330 7.28516 8.74280 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010412 B = 0.002750 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2688.624840 B =10179.050950 C =12376.967434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.122 4.122 3 C 0.139 3.861 4 H 0.081 0.919 5 C 0.121 3.879 6 N -0.711 5.711 7 C 0.612 3.388 8 O -0.536 6.536 9 C -0.143 4.143 10 O -0.196 6.196 11 C 0.227 3.773 12 N -0.525 5.525 13 C 0.073 3.927 14 C -0.079 4.079 15 N -0.713 5.713 16 C 0.539 3.461 17 O -0.546 6.546 18 C -0.133 4.133 19 S -0.143 6.143 20 C -0.545 4.545 21 H 0.080 0.920 22 C 0.014 3.986 23 N -0.910 5.910 24 Si 0.995 3.005 25 H -0.258 1.258 26 H -0.274 1.274 27 H -0.275 1.275 28 H 0.032 0.968 29 H 0.041 0.959 30 H 0.057 0.943 31 H 0.097 0.903 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.411 0.589 36 H 0.302 0.698 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.413 0.587 41 H 0.104 0.896 42 H 0.107 0.893 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.057 -5.067 -6.250 24.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.161 4.161 3 C 0.034 3.966 4 H 0.099 0.901 5 C -0.003 4.003 6 N -0.361 5.361 7 C 0.399 3.601 8 O -0.416 6.416 9 C -0.198 4.198 10 O -0.082 6.082 11 C 0.002 3.998 12 N -0.254 5.254 13 C -0.051 4.051 14 C -0.136 4.136 15 N -0.368 5.368 16 C 0.325 3.675 17 O -0.423 6.423 18 C -0.284 4.284 19 S 0.084 5.916 20 C -0.693 4.693 21 H 0.098 0.902 22 C -0.191 4.191 23 N -0.547 5.547 24 Si 0.818 3.182 25 H -0.181 1.181 26 H -0.199 1.199 27 H -0.201 1.201 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.116 0.884 32 H 0.100 0.900 33 H 0.111 0.889 34 H 0.117 0.883 35 H 0.247 0.753 36 H 0.317 0.683 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.249 0.751 41 H 0.122 0.878 42 H 0.125 0.875 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 22.605 -5.368 -7.973 24.564 hybrid contribution -0.507 0.822 2.275 2.471 sum 22.099 -4.547 -5.698 23.270 Atomic orbital electron populations 1.21741 0.96508 1.00656 1.01299 1.21853 0.95291 0.94595 1.04381 1.21308 0.93132 0.94886 0.87227 0.90102 1.21806 0.91371 0.82209 1.04871 1.45867 1.06467 1.11284 1.72508 1.16279 0.82783 0.84178 0.76901 1.90850 1.56382 1.43160 1.51179 1.22815 0.91508 0.87561 1.17868 1.84535 1.39595 1.15764 1.68296 1.29517 0.81775 0.95332 0.93132 1.70414 1.24123 1.10311 1.20559 1.22443 0.95022 0.90831 0.96786 1.20421 0.92201 0.97232 1.03781 1.45846 1.15765 1.57879 1.17264 1.19839 0.81872 0.77582 0.88208 1.90725 1.51798 1.58816 1.40950 1.23395 1.02268 1.03643 0.99103 1.85519 1.12952 1.71947 1.21202 1.23230 1.04432 1.41920 0.99704 0.90161 1.26079 0.94422 0.95962 1.02618 1.70180 1.05715 1.42183 1.36639 0.84951 0.78694 0.77772 0.76825 1.18133 1.19937 1.20077 0.94910 0.93971 0.92391 0.88445 0.90005 0.88869 0.88271 0.75313 0.68277 0.89270 0.89454 0.89276 0.75069 0.87823 0.87511 0.92043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.62 8.52 71.98 0.61 -3.01 16 2 C -0.12 -2.02 5.61 30.59 0.17 -1.85 16 3 C 0.14 2.43 2.42 44.99 0.11 2.54 16 4 H 0.08 1.77 7.58 -2.39 -0.02 1.75 16 5 C 0.12 1.64 5.23 86.38 0.45 2.09 16 6 N -0.71 -11.64 5.38 -467.05 -2.51 -14.16 16 7 C 0.61 12.35 7.79 86.46 0.67 13.02 16 8 O -0.54 -12.64 14.79 -4.30 -0.06 -12.70 16 9 C -0.14 -2.88 7.18 24.05 0.17 -2.71 16 10 O -0.20 -3.45 10.57 -7.08 -0.07 -3.53 16 11 C 0.23 3.03 13.21 130.42 1.72 4.75 16 12 N -0.52 -10.00 11.26 -303.13 -3.41 -13.41 16 13 C 0.07 1.47 7.16 41.83 0.30 1.77 16 14 C -0.08 -1.30 9.87 71.24 0.70 -0.60 16 15 N -0.71 -14.70 4.47 -442.52 -1.98 -16.67 16 16 C 0.54 17.34 6.42 87.66 0.56 17.90 16 17 O -0.55 -22.08 13.00 -3.03 -0.04 -22.12 16 18 C -0.13 -4.87 6.16 71.24 0.44 -4.44 16 19 S -0.14 -7.61 20.57 -56.49 -1.16 -8.77 16 20 C -0.54 -30.29 9.50 67.95 0.65 -29.64 16 21 H 0.08 4.17 7.80 -2.91 -0.02 4.15 16 22 C 0.01 0.78 5.49 84.86 0.47 1.25 16 23 N -0.91 -54.89 13.22 21.65 0.29 -54.61 16 24 Si 1.00 42.82 29.55 68.60 2.03 44.84 16 25 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 26 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 27 H -0.28 -11.55 7.11 99.48 0.71 -10.85 16 28 H 0.03 1.02 5.65 -2.39 -0.01 1.01 16 29 H 0.04 1.20 7.85 -2.39 -0.02 1.18 16 30 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.41 6.85 7.93 -92.71 -0.74 6.12 16 36 H 0.30 0.59 8.06 -2.91 -0.02 0.57 16 37 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 39 H 0.09 1.58 6.47 -2.39 -0.02 1.56 16 40 H 0.41 6.40 8.60 -92.72 -0.80 5.61 16 41 H 0.10 3.50 8.14 -2.39 -0.02 3.48 16 42 H 0.11 3.52 8.14 -2.40 -0.02 3.50 16 43 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -79.31 380.21 -0.37 -79.68 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: -0.47 Total: 20.37 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: 7.03 Total: 1.07 kcal Atomic # 7 Polarization: -91.23 SS G_CDS: -7.62 Total: -98.85 kcal Atomic # 8 Polarization: -38.17 SS G_CDS: -0.18 Total: -38.35 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.84 kcal Atomic # 16 Polarization: -7.61 SS G_CDS: -1.16 Total: -8.77 kcal Total: -79.31 -0.37 -79.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498989556.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.019 kcal (2) G-P(sol) polarization free energy of solvation -79.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds