Wall clock time and date at job start Sat Apr 11 2020 06:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.47006 * 2 1 4 4 C 1.35315 * 126.66465 * 90.32454 * 3 2 1 5 5 C 1.42265 * 103.92334 * 180.02562 * 4 3 2 6 6 C 1.48329 * 126.93931 * 179.89093 * 5 4 3 7 7 O 1.21498 * 120.00260 * 359.70207 * 6 5 4 8 8 N 1.34785 * 120.00154 * 179.70893 * 6 5 4 9 9 C 1.46495 * 120.00259 * 179.97438 * 8 6 5 10 10 C 1.52995 * 109.47115 * 179.97438 * 9 8 6 11 11 H 1.09007 * 109.47080 * 294.99685 * 10 9 8 12 12 C 1.53000 * 109.47023 * 175.00361 * 10 9 8 13 13 N 1.46499 * 109.47455 * 55.00282 * 10 9 8 14 14 C 1.34777 * 120.00199 * 205.00257 * 13 10 9 15 15 O 1.21283 * 119.99750 * 359.97438 * 14 13 10 16 16 C 1.50702 * 119.99928 * 180.27479 * 14 13 10 17 17 S 1.80999 * 109.46903 * 179.72354 * 16 14 13 18 18 C 1.76200 * 99.99730 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00351 * 0.02562 * 18 17 16 20 20 C 1.38796 * 120.00095 * 179.97438 * 18 17 16 21 21 N 1.31634 * 119.99941 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00384 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46990 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47522 * 119.99735 * 22 20 18 25 25 H 1.48500 * 109.47073 * 240.00101 * 22 20 18 26 26 N 1.30985 * 106.12247 * 359.62287 * 5 4 3 27 27 O 1.20903 * 111.43938 * 0.24085 * 26 5 4 28 28 H 1.08999 * 109.47316 * 59.99662 * 1 2 3 29 29 H 1.08997 * 109.47235 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47166 * 300.00050 * 1 2 3 31 31 H 1.09006 * 109.46887 * 240.00351 * 2 1 3 32 32 H 1.08999 * 109.47316 * 120.00338 * 2 1 3 33 33 H 1.08005 * 128.03836 * 359.94508 * 4 3 2 34 34 H 0.97004 * 119.99263 * 359.97438 * 8 6 5 35 35 H 1.08999 * 109.47015 * 59.99811 * 9 8 6 36 36 H 1.09000 * 109.47061 * 300.00498 * 9 8 6 37 37 H 1.09005 * 109.47473 * 179.97438 * 12 10 9 38 38 H 1.08998 * 109.46925 * 299.99562 * 12 10 9 39 39 H 1.08998 * 109.47598 * 59.99967 * 12 10 9 40 40 H 0.97000 * 119.99484 * 24.99354 * 13 10 9 41 41 H 1.09004 * 109.46965 * 299.72211 * 16 14 13 42 42 H 1.08994 * 109.46990 * 59.72065 * 16 14 13 43 43 H 0.97002 * 120.00288 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3074 2.1806 1.0854 5 6 2.7413 3.4189 0.5355 6 6 3.1697 4.6255 1.2843 7 8 3.1671 4.6193 2.4992 8 7 3.5617 5.7289 0.6169 9 6 3.9843 6.9208 1.3564 10 6 4.3763 8.0215 0.3687 11 1 5.2536 7.7068 -0.1967 12 6 4.6981 9.3050 1.1367 13 7 3.2646 8.2695 -0.5527 14 6 3.5041 8.7867 -1.7740 15 8 4.6400 9.0474 -2.1100 16 6 2.3599 9.0476 -2.7194 17 16 2.9993 9.7453 -4.2623 18 6 1.4933 9.9446 -5.1551 19 1 0.5553 9.6586 -4.7026 20 6 1.5123 10.4701 -6.4396 21 7 2.6554 10.8202 -6.9906 22 14 -0.0842 10.6821 -7.3859 23 1 -1.2204 10.2172 -6.5502 24 1 -0.2724 12.1156 -7.7246 25 1 -0.0292 9.8813 -8.6352 26 7 2.6915 3.2763 -0.7657 27 8 2.3007 2.1748 -1.0749 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 2.2173 1.9103 2.1272 34 1 3.5641 5.7337 -0.3532 35 1 4.8408 6.6744 1.9839 36 1 3.1634 7.2697 1.9829 37 1 4.9778 10.0892 0.4331 38 1 3.8209 9.6197 1.7020 39 1 5.5252 9.1207 1.8222 40 1 2.3562 8.0612 -0.2838 41 1 1.8427 8.1116 -2.9308 42 1 1.6646 9.7518 -2.2628 43 1 2.6688 11.1871 -7.8884 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502743076.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:00 Heat of formation + Delta-G solvation = -23.666114 kcal Electronic energy + Delta-G solvation = -26224.391425 eV Core-core repulsion = 22206.063698 eV Total energy + Delta-G solvation = -4018.327727 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.44459 -40.18049 -39.26012 -36.47852 -35.38937 -34.37193 -33.75054 -32.44070 -31.51880 -30.58136 -28.64151 -27.25941 -25.50092 -24.81543 -24.27902 -22.77510 -21.86392 -20.42552 -20.29831 -18.27780 -18.05905 -17.78109 -17.18368 -16.64424 -16.56623 -15.87444 -15.34360 -15.09812 -14.96282 -14.86393 -14.81400 -14.24647 -14.11366 -13.87702 -13.37426 -13.21710 -13.15951 -12.99296 -12.85539 -12.59180 -12.35728 -12.10167 -11.99542 -11.87922 -11.51192 -11.22101 -11.07879 -11.03302 -10.83285 -10.76591 -10.67134 -9.86184 -9.82309 -9.58091 -9.42530 -9.10495 -9.04119 -8.25595 -6.51668 -6.23136 -3.93702 0.76154 1.27215 2.46278 2.62000 2.80525 2.96921 3.02018 3.20830 3.26924 3.31428 3.58379 3.66302 4.03092 4.18943 4.32954 4.44924 4.60692 4.63340 4.73471 4.84172 4.90675 5.04359 5.10611 5.12388 5.12612 5.28096 5.28716 5.37955 5.42193 5.48573 5.51268 5.62292 5.66151 5.84998 5.88384 5.89282 6.11043 6.12850 6.52496 6.97942 7.58268 7.59242 7.60285 7.74442 8.34196 8.52640 9.22501 10.84336 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009224 B = 0.002557 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3034.899769 B =10948.460852 C =13477.937345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.043 4.043 3 C -0.030 4.030 4 C -0.182 4.182 5 C -0.030 4.030 6 C 0.601 3.399 7 O -0.524 6.524 8 N -0.713 5.713 9 C 0.112 3.888 10 C 0.131 3.869 11 H 0.097 0.903 12 C -0.161 4.161 13 N -0.739 5.739 14 C 0.534 3.466 15 O -0.514 6.514 16 C -0.154 4.154 17 S -0.059 6.059 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 N -0.325 5.325 27 O 0.128 5.872 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.180 0.820 34 H 0.413 0.587 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.067 0.933 40 H 0.399 0.601 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.295 -20.014 19.390 27.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.081 4.081 3 C -0.093 4.093 4 C -0.205 4.205 5 C -0.189 4.189 6 C 0.385 3.615 7 O -0.399 6.399 8 N -0.365 5.365 9 C -0.011 4.011 10 C 0.026 3.974 11 H 0.115 0.885 12 C -0.219 4.219 13 N -0.394 5.394 14 C 0.321 3.679 15 O -0.387 6.387 16 C -0.305 4.305 17 S 0.168 5.832 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.205 1.205 26 N -0.025 5.025 27 O 0.051 5.949 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.111 0.889 32 H 0.118 0.882 33 H 0.198 0.802 34 H 0.249 0.751 35 H 0.105 0.895 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.233 0.767 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.032 -18.596 18.566 26.277 hybrid contribution -2.872 -0.490 0.181 2.919 sum -2.840 -19.086 18.747 26.904 Atomic orbital electron populations 1.21820 0.93194 1.02987 1.03102 1.20181 0.96868 0.85938 1.05120 1.24584 1.02016 0.97285 0.85402 1.22400 1.05063 0.91516 1.01499 1.23443 1.07191 0.97959 0.90288 1.16846 0.77307 0.81050 0.86274 1.90805 1.53954 1.82680 1.12416 1.45875 1.66350 1.12829 1.11476 1.21830 1.01462 0.83476 0.94369 1.21149 0.91499 0.94377 0.90401 0.88543 1.22112 1.01910 0.97350 1.00572 1.46161 1.10007 1.67683 1.15561 1.20342 0.90638 0.75862 0.81099 1.90709 1.23159 1.49347 1.75503 1.23542 0.99660 1.05079 1.02220 1.85389 1.12339 1.80620 1.04898 1.22900 0.93505 1.49151 1.02727 0.90898 1.24997 0.97386 0.94676 0.96559 1.70027 1.24927 1.40061 1.15267 0.86112 0.81920 0.78013 0.79430 1.19621 1.20562 1.20543 1.74260 1.13396 0.99404 1.15414 1.84814 1.59482 1.17155 1.33437 0.91801 0.91028 0.91973 0.88912 0.88204 0.80230 0.75120 0.89454 0.90248 0.90899 0.92109 0.91420 0.76739 0.89221 0.89190 0.92226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.56 9.89 37.16 0.37 -0.19 16 2 C -0.04 -0.16 6.50 -27.88 -0.18 -0.34 16 3 C -0.03 -0.22 6.73 -35.35 -0.24 -0.46 16 4 C -0.18 -1.59 10.92 -39.08 -0.43 -2.02 16 5 C -0.03 -0.34 7.19 -82.53 -0.59 -0.93 16 6 C 0.60 7.27 7.85 -12.10 -0.09 7.17 16 7 O -0.52 -7.38 16.95 5.37 0.09 -7.28 16 8 N -0.71 -7.61 5.39 -61.10 -0.33 -7.94 16 9 C 0.11 1.04 5.23 -4.05 -0.02 1.02 16 10 C 0.13 1.42 2.73 -67.93 -0.19 1.23 16 11 H 0.10 1.21 7.58 -51.93 -0.39 0.81 16 12 C -0.16 -1.60 9.48 37.16 0.35 -1.24 16 13 N -0.74 -9.26 4.52 -53.81 -0.24 -9.50 16 14 C 0.53 9.53 7.81 -10.98 -0.09 9.45 16 15 O -0.51 -11.16 15.53 5.55 0.09 -11.07 16 16 C -0.15 -3.06 6.16 36.01 0.22 -2.84 16 17 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 18 C -0.53 -15.20 9.50 30.94 0.29 -14.90 16 19 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 20 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 21 N -0.87 -26.13 13.22 55.49 0.73 -25.40 16 22 Si 0.92 21.43 29.55 -169.99 -5.02 16.40 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 N -0.33 -3.86 11.84 33.29 0.39 -3.47 16 27 O 0.13 1.30 11.18 17.25 0.19 1.49 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.10 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.18 1.24 8.06 -52.48 -0.42 0.82 16 34 H 0.41 4.60 7.90 -40.82 -0.32 4.28 16 35 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.40 4.14 8.60 -40.82 -0.35 3.78 16 41 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 42 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 43 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 391.51 15.07 5.90 5.90 Total: -1.00 -36.07 391.51 -7.20 -43.27 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -6.11 Total: 3.48 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: -0.69 Total: -2.08 kcal Atomic # 7 Polarization: -46.87 SS G_CDS: 0.56 Total: -46.31 kcal Atomic # 8 Polarization: -17.23 SS G_CDS: 0.37 Total: -16.86 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.07 -7.20 -43.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502743076.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.607 kcal (2) G-P(sol) polarization free energy of solvation -36.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds