Wall clock time and date at job start Sat Apr 11 2020 06:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.47006 * 2 1 4 4 C 1.35315 * 126.66465 * 90.32454 * 3 2 1 5 5 C 1.42265 * 103.92334 * 180.02562 * 4 3 2 6 6 C 1.48329 * 126.93931 * 179.89093 * 5 4 3 7 7 O 1.21498 * 120.00260 * 359.70207 * 6 5 4 8 8 N 1.34785 * 120.00154 * 179.70893 * 6 5 4 9 9 C 1.46495 * 120.00259 * 179.97438 * 8 6 5 10 10 C 1.52995 * 109.47115 * 179.97438 * 9 8 6 11 11 H 1.09007 * 109.47080 * 294.99685 * 10 9 8 12 12 C 1.53000 * 109.47023 * 175.00361 * 10 9 8 13 13 N 1.46499 * 109.47455 * 55.00282 * 10 9 8 14 14 C 1.34777 * 120.00199 * 205.00257 * 13 10 9 15 15 O 1.21283 * 119.99750 * 359.97438 * 14 13 10 16 16 C 1.50702 * 119.99928 * 180.27479 * 14 13 10 17 17 S 1.80999 * 109.46903 * 179.72354 * 16 14 13 18 18 C 1.76200 * 99.99730 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00351 * 0.02562 * 18 17 16 20 20 C 1.38796 * 120.00095 * 179.97438 * 18 17 16 21 21 N 1.31634 * 119.99941 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00384 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46990 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47522 * 119.99735 * 22 20 18 25 25 H 1.48500 * 109.47073 * 240.00101 * 22 20 18 26 26 N 1.30985 * 106.12247 * 359.62287 * 5 4 3 27 27 O 1.20903 * 111.43938 * 0.24085 * 26 5 4 28 28 H 1.08999 * 109.47316 * 59.99662 * 1 2 3 29 29 H 1.08997 * 109.47235 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47166 * 300.00050 * 1 2 3 31 31 H 1.09006 * 109.46887 * 240.00351 * 2 1 3 32 32 H 1.08999 * 109.47316 * 120.00338 * 2 1 3 33 33 H 1.08005 * 128.03836 * 359.94508 * 4 3 2 34 34 H 0.97004 * 119.99263 * 359.97438 * 8 6 5 35 35 H 1.08999 * 109.47015 * 59.99811 * 9 8 6 36 36 H 1.09000 * 109.47061 * 300.00498 * 9 8 6 37 37 H 1.09005 * 109.47473 * 179.97438 * 12 10 9 38 38 H 1.08998 * 109.46925 * 299.99562 * 12 10 9 39 39 H 1.08998 * 109.47598 * 59.99967 * 12 10 9 40 40 H 0.97000 * 119.99484 * 24.99354 * 13 10 9 41 41 H 1.09004 * 109.46965 * 299.72211 * 16 14 13 42 42 H 1.08994 * 109.46990 * 59.72065 * 16 14 13 43 43 H 0.97002 * 120.00288 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3074 2.1806 1.0854 5 6 2.7413 3.4189 0.5355 6 6 3.1697 4.6255 1.2843 7 8 3.1671 4.6193 2.4992 8 7 3.5617 5.7289 0.6169 9 6 3.9843 6.9208 1.3564 10 6 4.3763 8.0215 0.3687 11 1 5.2536 7.7068 -0.1967 12 6 4.6981 9.3050 1.1367 13 7 3.2646 8.2695 -0.5527 14 6 3.5041 8.7867 -1.7740 15 8 4.6400 9.0474 -2.1100 16 6 2.3599 9.0476 -2.7194 17 16 2.9993 9.7453 -4.2623 18 6 1.4933 9.9446 -5.1551 19 1 0.5553 9.6586 -4.7026 20 6 1.5123 10.4701 -6.4396 21 7 2.6554 10.8202 -6.9906 22 14 -0.0842 10.6821 -7.3859 23 1 -1.2204 10.2172 -6.5502 24 1 -0.2724 12.1156 -7.7246 25 1 -0.0292 9.8813 -8.6352 26 7 2.6915 3.2763 -0.7657 27 8 2.3007 2.1748 -1.0749 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 2.2173 1.9103 2.1272 34 1 3.5641 5.7337 -0.3532 35 1 4.8408 6.6744 1.9839 36 1 3.1634 7.2697 1.9829 37 1 4.9778 10.0892 0.4331 38 1 3.8209 9.6197 1.7020 39 1 5.5252 9.1207 1.8222 40 1 2.3562 8.0612 -0.2838 41 1 1.8427 8.1116 -2.9308 42 1 1.6646 9.7518 -2.2628 43 1 2.6688 11.1871 -7.8884 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502743076.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:59 Heat of formation + Delta-G solvation = -50.077368 kcal Electronic energy + Delta-G solvation = -26225.536703 eV Core-core repulsion = 22206.063698 eV Total energy + Delta-G solvation = -4019.473005 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -46.20348 -41.22311 -40.50037 -37.58834 -35.86866 -35.26050 -34.67899 -34.59171 -32.71130 -31.15231 -30.08910 -28.09371 -27.67508 -25.46369 -24.89039 -23.47775 -22.91004 -21.68983 -21.12831 -19.89735 -18.98166 -18.70457 -18.09092 -17.97566 -17.54440 -16.95579 -16.88931 -16.42524 -16.38241 -15.86928 -15.63735 -15.40996 -14.99273 -14.82561 -14.61258 -14.38043 -14.11855 -14.04577 -13.75361 -13.50958 -13.32938 -13.17451 -13.03668 -12.92659 -12.87667 -12.59421 -12.41751 -12.12849 -11.86572 -11.72246 -11.63181 -11.61539 -11.17164 -11.00207 -10.50436 -10.40117 -10.29434 -10.25494 -8.67767 -8.36318 -6.14018 -0.03606 0.61105 1.24701 1.40150 1.44845 1.55355 1.56274 1.68328 1.92901 1.99435 2.20612 2.26298 2.80550 2.97956 3.29475 3.40041 3.47177 3.87829 3.92416 3.97980 4.06479 4.14777 4.18371 4.28399 4.34462 4.43528 4.47551 4.50604 4.60604 4.71003 4.71670 4.95099 4.95701 5.03560 5.06263 5.13659 5.27898 5.39710 5.40492 5.41099 6.07059 6.18540 6.40272 6.72937 6.97171 7.05306 7.17521 8.73082 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009224 B = 0.002557 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3034.899769 B =10948.460852 C =13477.937345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.041 4.041 3 C -0.015 4.015 4 C -0.191 4.191 5 C -0.049 4.049 6 C 0.602 3.398 7 O -0.547 6.547 8 N -0.710 5.710 9 C 0.120 3.880 10 C 0.135 3.865 11 H 0.079 0.921 12 C -0.156 4.156 13 N -0.713 5.713 14 C 0.539 3.461 15 O -0.558 6.558 16 C -0.132 4.132 17 S -0.147 6.147 18 C -0.546 4.546 19 H 0.081 0.919 20 C 0.013 3.987 21 N -0.911 5.911 22 Si 0.998 3.002 23 H -0.258 1.258 24 H -0.273 1.273 25 H -0.274 1.274 26 N -0.352 5.352 27 O 0.120 5.880 28 H 0.050 0.950 29 H 0.089 0.911 30 H 0.057 0.943 31 H 0.106 0.894 32 H 0.124 0.876 33 H 0.197 0.803 34 H 0.410 0.590 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.043 0.957 38 H 0.077 0.923 39 H 0.091 0.909 40 H 0.413 0.587 41 H 0.106 0.894 42 H 0.109 0.891 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.275 -21.651 20.975 30.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.079 4.079 3 C -0.078 4.078 4 C -0.214 4.214 5 C -0.207 4.207 6 C 0.386 3.614 7 O -0.424 6.424 8 N -0.361 5.361 9 C -0.003 4.003 10 C 0.030 3.970 11 H 0.097 0.903 12 C -0.215 4.215 13 N -0.368 5.368 14 C 0.325 3.675 15 O -0.435 6.435 16 C -0.283 4.283 17 S 0.080 5.920 18 C -0.693 4.693 19 H 0.099 0.901 20 C -0.192 4.192 21 N -0.547 5.547 22 Si 0.820 3.180 23 H -0.181 1.181 24 H -0.199 1.199 25 H -0.199 1.199 26 N -0.053 5.053 27 O 0.044 5.956 28 H 0.069 0.931 29 H 0.108 0.892 30 H 0.077 0.923 31 H 0.124 0.876 32 H 0.142 0.858 33 H 0.214 0.786 34 H 0.246 0.754 35 H 0.118 0.882 36 H 0.112 0.888 37 H 0.062 0.938 38 H 0.096 0.904 39 H 0.109 0.891 40 H 0.250 0.750 41 H 0.125 0.875 42 H 0.127 0.873 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.969 -20.248 20.192 28.664 hybrid contribution -2.242 -0.087 -0.192 2.252 sum -4.211 -20.336 20.000 28.832 Atomic orbital electron populations 1.21827 0.92952 1.03962 1.02303 1.20444 0.96870 0.83629 1.06974 1.25275 1.00109 0.98195 0.84211 1.22674 1.05329 0.90742 1.02645 1.23585 1.07930 0.98639 0.90521 1.16950 0.76971 0.81395 0.86035 1.90785 1.55214 1.83147 1.13206 1.45916 1.65827 1.13015 1.11360 1.21859 1.02513 0.82267 0.93706 1.21241 0.90086 0.95613 0.90067 0.90270 1.22070 1.03593 0.95591 1.00208 1.45897 1.11524 1.65485 1.13924 1.19984 0.89220 0.76064 0.82202 1.90703 1.24493 1.51700 1.76637 1.23385 1.00445 1.05630 0.98854 1.85539 1.14573 1.81944 1.09908 1.23221 0.93640 1.49187 1.03290 0.90088 1.26123 1.01377 0.94025 0.97648 1.70185 1.27642 1.41071 1.15825 0.84910 0.77113 0.78175 0.77783 1.18133 1.19873 1.19888 1.74254 1.14752 1.00448 1.15848 1.84774 1.59363 1.17027 1.34472 0.93061 0.89176 0.92337 0.87587 0.85793 0.78589 0.75405 0.88179 0.88795 0.93799 0.90425 0.89060 0.74997 0.87546 0.87316 0.91974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.89 71.98 0.71 -0.08 16 2 C -0.04 -0.21 6.50 29.85 0.19 -0.01 16 3 C -0.01 -0.20 6.73 25.01 0.17 -0.03 16 4 C -0.19 -3.11 10.92 22.60 0.25 -2.87 16 5 C -0.05 -1.08 7.19 42.96 0.31 -0.77 16 6 C 0.60 14.05 7.85 86.93 0.68 14.73 16 7 O -0.55 -14.78 16.95 -3.71 -0.06 -14.84 16 8 N -0.71 -14.41 5.39 -465.51 -2.51 -16.92 16 9 C 0.12 1.99 5.23 86.38 0.45 2.44 16 10 C 0.13 2.74 2.73 44.99 0.12 2.86 16 11 H 0.08 1.97 7.58 -2.38 -0.02 1.95 16 12 C -0.16 -2.85 9.48 71.98 0.68 -2.17 16 13 N -0.71 -17.00 4.52 -442.53 -2.00 -19.00 16 14 C 0.54 19.19 7.81 87.66 0.68 19.87 16 15 O -0.56 -24.91 15.53 -3.04 -0.05 -24.96 16 16 C -0.13 -5.19 6.16 71.24 0.44 -4.75 16 17 S -0.15 -8.13 20.57 -56.49 -1.16 -9.29 16 18 C -0.55 -31.24 9.50 67.95 0.65 -30.59 16 19 H 0.08 4.33 7.80 -2.91 -0.02 4.31 16 20 C 0.01 0.74 5.49 84.86 0.47 1.21 16 21 N -0.91 -56.04 13.22 21.65 0.29 -55.75 16 22 Si 1.00 43.79 29.55 68.60 2.03 45.82 16 23 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 24 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 25 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 26 N -0.35 -8.32 11.84 -49.52 -0.59 -8.91 16 27 O 0.12 2.37 11.18 71.91 0.80 3.17 16 28 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.09 0.16 8.14 -2.39 -0.02 0.14 16 30 H 0.06 0.35 8.14 -2.39 -0.02 0.34 16 31 H 0.11 0.31 8.14 -2.38 -0.02 0.29 16 32 H 0.12 0.09 8.14 -2.39 -0.02 0.07 16 33 H 0.20 2.37 8.06 -2.91 -0.02 2.35 16 34 H 0.41 8.92 7.90 -92.71 -0.73 8.19 16 35 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.04 1.09 8.14 -2.38 -0.02 1.07 16 38 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.41 7.66 8.60 -92.71 -0.80 6.86 16 41 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 42 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 43 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -81.16 391.51 2.08 -79.08 By element: Atomic # 1 Polarization: 22.24 SS G_CDS: -0.48 Total: 21.77 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: 5.81 Total: -0.16 kcal Atomic # 7 Polarization: -95.78 SS G_CDS: -4.81 Total: -100.58 kcal Atomic # 8 Polarization: -37.33 SS G_CDS: 0.69 Total: -36.63 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 16 Polarization: -8.13 SS G_CDS: -1.16 Total: -9.29 kcal Total: -81.16 2.08 -79.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502743076.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.004 kcal (2) G-P(sol) polarization free energy of solvation -81.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds