Wall clock time and date at job start Sat Apr 11 2020 06:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50703 * 109.47324 * 2 1 4 4 N 1.30016 * 127.33332 * 270.00326 * 3 2 1 5 5 O 1.20656 * 112.30041 * 179.97438 * 4 3 2 6 6 C 1.33499 * 113.15795 * 359.75713 * 5 4 3 7 7 C 1.37362 * 106.33709 * 0.38708 * 6 5 4 8 8 C 1.47402 * 128.56305 * 179.91214 * 7 6 5 9 9 O 1.21603 * 120.00063 * 179.67612 * 8 7 6 10 10 N 1.34777 * 119.99679 * 359.67301 * 8 7 6 11 11 C 1.46499 * 119.99665 * 179.72400 * 10 8 7 12 12 C 1.53004 * 109.47198 * 180.27868 * 11 10 8 13 13 C 1.52997 * 109.47000 * 179.97438 * 12 11 10 14 14 N 1.46506 * 109.46748 * 180.02562 * 13 12 11 15 15 C 1.34775 * 119.99877 * 180.02562 * 14 13 12 16 16 O 1.21284 * 120.00391 * 359.97438 * 15 14 13 17 17 C 1.50703 * 120.00069 * 180.02562 * 15 14 13 18 18 S 1.81001 * 109.47011 * 179.97438 * 17 15 14 19 19 C 1.76203 * 99.99974 * 179.97438 * 18 17 15 20 20 H 1.08002 * 119.99699 * 359.97438 * 19 18 17 21 21 C 1.38794 * 120.00142 * 179.97438 * 19 18 17 22 22 N 1.31631 * 120.00165 * 180.02562 * 21 19 18 23 23 Si 1.86795 * 120.00074 * 359.97438 * 21 19 18 24 24 H 1.48496 * 109.47186 * 89.99937 * 23 21 19 25 25 H 1.48497 * 109.47105 * 210.00113 * 23 21 19 26 26 H 1.48497 * 109.47165 * 329.99886 * 23 21 19 27 27 H 1.09001 * 109.47035 * 299.99885 * 1 2 3 28 28 H 1.08998 * 109.47538 * 60.00247 * 1 2 3 29 29 H 1.08998 * 109.47148 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47035 * 240.00115 * 2 1 3 31 31 H 1.09004 * 109.47255 * 120.00108 * 2 1 3 32 32 H 1.07993 * 126.83299 * 180.30026 * 6 5 4 33 33 H 0.97001 * 120.00485 * 0.02562 * 10 8 7 34 34 H 1.09009 * 109.47454 * 300.27637 * 11 10 8 35 35 H 1.08998 * 109.47492 * 60.27932 * 11 10 8 36 36 H 1.08995 * 109.46638 * 300.00121 * 12 11 10 37 37 H 1.09006 * 109.47139 * 60.00254 * 12 11 10 38 38 H 1.08995 * 109.47672 * 299.99669 * 13 12 11 39 39 H 1.09007 * 109.47288 * 60.00489 * 13 12 11 40 40 H 0.96992 * 119.99973 * 359.97438 * 14 13 12 41 41 H 1.09002 * 109.46788 * 299.98995 * 17 15 14 42 42 H 1.08998 * 109.47474 * 59.99475 * 17 15 14 43 43 H 0.96995 * 120.00276 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2951 2.1642 -1.0338 5 8 2.6831 3.2630 -0.7208 6 6 2.7408 3.4427 0.6007 7 6 2.3292 2.2621 1.1696 8 6 2.2087 1.9239 2.5992 9 8 1.8184 0.8214 2.9323 10 7 2.5310 2.8365 3.5371 11 6 2.4055 2.5024 4.9579 12 6 2.8249 3.7062 5.8040 13 6 2.6932 3.3574 7.2878 14 7 3.0942 4.5104 8.0979 15 6 3.0596 4.4336 9.4430 16 8 2.6960 3.4102 9.9829 17 6 3.4716 5.6198 10.2763 18 16 3.3159 5.2071 12.0318 19 6 3.8462 6.7256 12.7513 20 1 4.1405 7.5495 12.1179 21 6 3.8858 6.8629 14.1318 22 7 4.2815 7.9975 14.6693 23 14 3.3762 5.4383 15.2272 24 1 4.5613 4.5949 15.5259 25 1 2.8119 5.9661 16.4953 26 1 2.3500 4.6212 14.5311 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.0509 4.3378 1.1195 33 1 2.8420 3.7161 3.2714 34 1 1.3699 2.2450 5.1806 35 1 3.0487 1.6536 5.1898 36 1 3.8604 3.9636 5.5813 37 1 2.1816 4.5551 5.5721 38 1 1.6575 3.1004 7.5101 39 1 3.3362 2.5085 7.5200 40 1 3.3854 5.3287 7.6662 41 1 4.5070 5.8779 10.0539 42 1 2.8277 6.4681 10.0443 43 1 4.3096 8.0934 15.6341 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001522839721.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:03 Heat of formation + Delta-G solvation = -28.554869 kcal Electronic energy + Delta-G solvation = -25129.466910 eV Core-core repulsion = 21110.927191 eV Total energy + Delta-G solvation = -4018.539720 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.48335 -40.13193 -39.34750 -36.59182 -35.67834 -34.73578 -33.06189 -32.46812 -31.74938 -31.54767 -29.33202 -26.45334 -25.63808 -24.88743 -24.28314 -22.31358 -21.45258 -21.05773 -20.53945 -18.80606 -18.25447 -17.88730 -17.10679 -16.78733 -16.47825 -16.38251 -15.89111 -15.43290 -15.22600 -14.96614 -14.78801 -14.63121 -14.32015 -13.88002 -13.73729 -13.32712 -13.25829 -13.12084 -12.83442 -12.58103 -12.20162 -12.15614 -12.08312 -12.03265 -11.49062 -11.40871 -11.29318 -11.03088 -10.67825 -10.61479 -10.49564 -10.36366 -9.88632 -9.67707 -9.60662 -9.09570 -9.01800 -8.53662 -6.95363 -6.31766 -4.03957 0.44964 1.25323 2.23114 2.58490 2.64899 2.75969 2.90711 3.27004 3.31862 3.44391 3.48581 3.60758 3.69078 4.21964 4.24038 4.30716 4.45208 4.47371 4.53169 4.65803 4.73040 4.81859 4.85959 4.90408 5.06352 5.07411 5.16438 5.23747 5.34660 5.40342 5.44301 5.62643 5.64284 5.70867 5.72735 5.76166 5.80521 5.95863 6.41330 6.81812 7.50860 7.57111 7.64863 7.91165 8.38265 8.41432 9.14439 10.77408 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.035627 B = 0.001389 C = 0.001345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.723450 B =20155.885481 C =20818.660280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.049 4.049 3 C 0.075 3.925 4 N -0.357 5.357 5 O 0.099 5.901 6 C -0.005 4.005 7 C -0.254 4.254 8 C 0.595 3.405 9 O -0.521 6.521 10 N -0.724 5.724 11 C 0.123 3.877 12 C -0.144 4.144 13 C 0.124 3.876 14 N -0.738 5.738 15 C 0.530 3.470 16 O -0.518 6.518 17 C -0.124 4.124 18 S -0.142 6.142 19 C -0.523 4.523 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.880 5.880 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.101 0.899 32 H 0.226 0.774 33 H 0.399 0.601 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.400 0.600 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.440 -8.733 -32.457 33.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.087 4.087 3 C -0.088 4.088 4 N -0.063 5.063 5 O 0.040 5.960 6 C -0.088 4.088 7 C -0.262 4.262 8 C 0.381 3.619 9 O -0.397 6.397 10 N -0.376 5.376 11 C 0.000 4.000 12 C -0.182 4.182 13 C 0.000 4.000 14 N -0.393 5.393 15 C 0.316 3.684 16 O -0.392 6.392 17 C -0.275 4.275 18 S 0.085 5.915 19 C -0.670 4.670 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.517 5.517 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.119 0.881 32 H 0.242 0.758 33 H 0.234 0.766 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.234 0.766 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.354 -11.315 -32.448 34.639 hybrid contribution 0.703 1.842 0.568 2.052 sum -3.652 -9.473 -31.880 33.457 Atomic orbital electron populations 1.21666 0.93439 1.02720 1.02220 1.20081 0.96888 0.87188 1.04563 1.24924 0.98749 0.98966 0.86150 1.73713 1.16490 0.92561 1.23512 1.84603 1.61783 1.26698 1.22922 1.26437 0.98121 0.99912 0.84309 1.22337 1.12883 0.95362 0.95572 1.16804 0.77530 0.84515 0.83049 1.90830 1.45540 1.21535 1.81833 1.45769 1.68531 1.16690 1.06576 1.21298 1.02887 0.97711 0.78148 1.21984 1.03074 0.98449 0.94668 1.21105 1.01414 0.89461 0.88060 1.45914 1.70402 1.16762 1.06215 1.20298 0.76973 0.89402 0.81721 1.90714 1.45374 1.31472 1.71612 1.23278 1.04964 0.98794 1.00454 1.84819 1.88131 1.23180 0.95412 1.22312 1.51304 0.98220 0.95175 0.89387 1.24707 0.93486 0.95916 0.97143 1.69934 1.45136 1.24474 1.12106 0.86735 0.81080 0.82965 0.81081 1.19190 1.19911 1.15923 0.92057 0.92704 0.91293 0.89899 0.88071 0.75763 0.76632 0.90485 0.90472 0.90300 0.90313 0.91125 0.91120 0.76646 0.88470 0.88426 0.91915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 9.89 37.15 0.37 -0.57 16 2 C -0.05 -0.36 6.20 -27.88 -0.17 -0.53 16 3 C 0.07 0.61 6.84 -79.77 -0.55 0.07 16 4 N -0.36 -3.05 12.01 34.78 0.42 -2.63 16 5 O 0.10 0.63 11.06 18.64 0.21 0.84 16 6 C -0.01 -0.02 11.85 30.41 0.36 0.34 16 7 C -0.25 -1.71 6.47 -102.89 -0.67 -2.37 16 8 C 0.60 4.66 7.81 -12.53 -0.10 4.56 16 9 O -0.52 -5.97 15.70 5.27 0.08 -5.89 16 10 N -0.72 -3.47 5.55 -61.39 -0.34 -3.81 16 11 C 0.12 0.70 5.67 -4.04 -0.02 0.68 16 12 C -0.14 -0.66 5.44 -26.73 -0.15 -0.81 16 13 C 0.12 1.10 5.67 -4.04 -0.02 1.07 16 14 N -0.74 -7.98 5.56 -60.29 -0.33 -8.32 16 15 C 0.53 8.80 7.85 -10.98 -0.09 8.72 16 16 O -0.52 -10.76 15.86 5.55 0.09 -10.67 16 17 C -0.12 -2.28 6.16 36.01 0.22 -2.06 16 18 S -0.14 -3.52 18.55 -107.50 -1.99 -5.51 16 19 C -0.52 -14.80 10.04 30.94 0.31 -14.49 16 20 H 0.09 2.59 8.03 -52.49 -0.42 2.17 16 21 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 22 N -0.88 -26.22 13.97 55.49 0.78 -25.45 16 23 Si 0.86 21.52 27.74 -169.99 -4.71 16.81 16 24 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 26 H -0.24 -5.90 6.74 56.52 0.38 -5.52 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.10 0.81 7.11 -51.93 -0.37 0.44 16 32 H 0.23 -0.37 7.68 -52.49 -0.40 -0.77 16 33 H 0.40 0.57 7.66 -40.82 -0.31 0.26 16 34 H 0.08 0.52 8.14 -51.92 -0.42 0.10 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.40 3.03 8.47 -40.82 -0.35 2.69 16 41 H 0.10 1.64 8.14 -51.92 -0.42 1.22 16 42 H 0.10 1.65 8.14 -51.92 -0.42 1.23 16 43 H 0.27 7.50 8.31 -40.82 -0.34 7.17 16 LS Contribution 387.31 15.07 5.84 5.84 Total: -1.00 -37.95 387.31 -6.65 -44.60 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: -6.08 Total: -3.11 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -0.59 Total: -2.70 kcal Atomic # 7 Polarization: -40.72 SS G_CDS: 0.52 Total: -40.21 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: 0.38 Total: -15.72 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.71 Total: 16.81 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -1.99 Total: -5.51 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -37.95 -6.65 -44.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001522839721.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.046 kcal (2) G-P(sol) polarization free energy of solvation -37.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds