Wall clock time and date at job start Sat Apr 11 2020 06:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52989 * 109.47449 * 2 1 4 4 H 1.09000 * 109.47381 * 305.00767 * 3 2 1 5 5 C 1.52997 * 109.47582 * 184.99850 * 3 2 1 6 6 N 1.46506 * 109.47398 * 185.00030 * 5 3 2 7 7 C 1.34775 * 119.99941 * 180.02562 * 6 5 3 8 8 O 1.21282 * 120.00019 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.00227 * 180.02562 * 7 6 5 10 10 S 1.80998 * 109.47267 * 179.97438 * 9 7 6 11 11 C 1.76205 * 99.99639 * 179.97438 * 10 9 7 12 12 H 1.07994 * 120.00305 * 0.02562 * 11 10 9 13 13 C 1.38802 * 119.99761 * 180.02562 * 11 10 9 14 14 N 1.31629 * 120.00140 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 119.99784 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47541 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47163 * 119.99998 * 15 13 11 18 18 H 1.48499 * 109.46896 * 239.99530 * 15 13 11 19 19 N 1.46507 * 109.46995 * 65.00198 * 3 2 1 20 20 C 1.34772 * 119.99905 * 275.00164 * 19 3 2 21 21 O 1.21493 * 120.00049 * 359.97438 * 20 19 3 22 22 C 1.48333 * 120.00255 * 179.97438 * 20 19 3 23 23 N 1.30984 * 126.93387 * 359.97438 * 22 20 19 24 24 O 1.20905 * 111.44289 * 180.02562 * 23 22 20 25 25 C 1.34022 * 111.84070 * 0.02562 * 24 23 22 26 26 C 1.35312 * 106.66985 * 359.97438 * 25 24 23 27 27 C 1.50703 * 128.03788 * 179.97438 * 26 25 24 28 28 H 1.09004 * 109.46834 * 299.99338 * 1 2 3 29 29 H 1.08989 * 109.47289 * 59.99899 * 1 2 3 30 30 H 1.09004 * 109.47262 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47024 * 239.99962 * 2 1 3 32 32 H 1.09004 * 109.47516 * 120.00509 * 2 1 3 33 33 H 1.08998 * 109.47538 * 305.00169 * 5 3 2 34 34 H 1.09004 * 109.46669 * 65.00468 * 5 3 2 35 35 H 0.96998 * 119.99531 * 0.02562 * 6 5 3 36 36 H 1.08998 * 109.46670 * 300.00246 * 9 7 6 37 37 H 1.08997 * 109.46719 * 59.99661 * 9 7 6 38 38 H 0.97001 * 120.00228 * 179.97438 * 14 13 11 39 39 H 0.97000 * 120.00163 * 94.99893 * 19 3 2 40 40 H 1.08003 * 126.66518 * 180.02562 * 25 24 23 41 41 H 1.09009 * 109.46916 * 270.04111 * 27 26 25 42 42 H 1.08996 * 109.47465 * 30.04280 * 27 26 25 43 43 H 1.08998 * 109.46863 * 150.04660 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6053 1.9815 -0.8417 5 6 3.5648 1.4442 -0.1257 6 7 4.0631 2.8167 -0.0059 7 6 5.3857 3.0629 -0.0868 8 8 6.1633 2.1484 -0.2591 9 6 5.8983 4.4746 0.0370 10 16 7.7022 4.4767 -0.1118 11 6 8.0216 6.2007 0.0639 12 1 7.2030 6.8891 0.2127 13 6 9.3254 6.6738 0.0111 14 7 10.3233 5.8346 -0.1698 15 14 9.6641 8.5012 0.1981 16 1 8.3819 9.2253 0.3894 17 1 10.5398 8.7243 1.3765 18 1 10.3400 9.0069 -1.0237 19 7 1.6525 2.0974 1.2519 20 6 0.4352 2.6643 1.3671 21 8 -0.3405 2.6326 0.4326 22 6 0.0426 3.3269 2.6347 23 7 0.7660 3.4397 3.7209 24 8 0.1700 4.0335 4.5892 25 6 -1.0550 4.4027 4.1902 26 6 -1.1960 3.9675 2.9168 27 6 -2.3884 4.1241 2.0086 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.9954 0.8310 0.6659 34 1 3.8498 1.0377 -1.0961 35 1 3.4410 3.5482 0.1316 36 1 5.4673 5.0883 -0.7540 37 1 5.6137 4.8807 1.0077 38 1 11.2344 6.1653 -0.2071 39 1 2.2720 2.1230 1.9979 40 1 -1.7870 4.9435 4.7717 41 1 -3.0568 3.2725 2.1364 42 1 -2.9184 5.0428 2.2599 43 1 -2.0526 4.1701 0.9727 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001531083497.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:20 Heat of formation + Delta-G solvation = -19.894514 kcal Electronic energy + Delta-G solvation = -26775.678843 eV Core-core repulsion = 22757.514664 eV Total energy + Delta-G solvation = -4018.164179 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.50201 -40.50065 -39.12792 -36.86620 -35.07610 -33.91886 -33.33890 -32.43606 -32.12549 -30.11622 -28.63698 -27.96470 -25.52324 -25.18210 -23.48100 -22.11096 -21.63882 -20.88985 -20.31490 -18.81097 -18.18838 -17.86182 -17.09255 -16.80193 -16.31583 -15.93910 -15.60148 -15.13799 -14.84351 -14.80975 -14.41578 -13.99005 -13.79421 -13.73415 -13.63582 -13.50114 -13.38669 -12.97259 -12.79324 -12.63941 -12.42837 -11.90543 -11.81159 -11.76497 -11.44664 -11.17908 -11.07484 -11.02812 -10.76309 -10.69811 -10.53656 -9.88094 -9.82052 -9.55982 -9.41069 -9.09033 -8.98717 -8.24901 -6.51099 -6.22623 -3.93167 0.72138 1.23292 2.45322 2.72194 2.75445 2.98936 3.04663 3.21206 3.27357 3.31972 3.51784 3.67104 4.11772 4.19501 4.30286 4.42335 4.62746 4.65181 4.75883 4.94848 5.07756 5.09997 5.12759 5.19608 5.21410 5.23142 5.38766 5.44094 5.47115 5.58632 5.69659 5.72737 5.78341 5.82697 5.86658 6.03377 6.12105 6.12883 6.49937 6.95090 7.54454 7.58966 7.61348 7.70813 8.34779 8.54379 9.22949 10.84887 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011759 B = 0.002497 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.610042 B =11209.179163 C =12972.414805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.133 4.133 3 C 0.135 3.865 4 H 0.101 0.899 5 C 0.113 3.887 6 N -0.740 5.740 7 C 0.533 3.467 8 O -0.515 6.515 9 C -0.154 4.154 10 S -0.059 6.059 11 C -0.535 4.535 12 H 0.073 0.927 13 C 0.073 3.927 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.280 1.280 19 N -0.710 5.710 20 C 0.602 3.398 21 O -0.513 6.513 22 C -0.033 4.033 23 N -0.327 5.327 24 O 0.127 5.873 25 C -0.066 4.066 26 C -0.151 4.151 27 C -0.082 4.082 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.049 0.951 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.398 0.602 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.268 0.732 39 H 0.410 0.590 40 H 0.224 0.776 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.392 -6.633 6.655 29.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.172 4.172 3 C 0.030 3.970 4 H 0.119 0.881 5 C -0.012 4.012 6 N -0.396 5.396 7 C 0.319 3.681 8 O -0.389 6.389 9 C -0.304 4.304 10 S 0.167 5.833 11 C -0.683 4.683 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.196 1.196 17 H -0.205 1.205 18 H -0.206 1.206 19 N -0.363 5.363 20 C 0.387 3.613 21 O -0.386 6.386 22 C -0.192 4.192 23 N -0.026 5.026 24 O 0.051 5.949 25 C -0.146 4.146 26 C -0.156 4.156 27 C -0.139 4.139 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.104 0.896 35 H 0.232 0.768 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.078 0.922 39 H 0.245 0.755 40 H 0.240 0.760 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -26.179 -8.668 5.906 28.202 hybrid contribution -1.379 2.803 0.551 3.172 sum -27.558 -5.865 6.457 28.906 Atomic orbital electron populations 1.21793 0.94555 1.00898 1.02897 1.21903 0.97224 0.94847 1.03188 1.21455 0.94052 0.94509 0.86946 0.88147 1.21603 0.91072 0.84880 1.03636 1.45995 1.07924 1.08763 1.76876 1.20318 0.81271 0.91173 0.75316 1.90710 1.55386 1.46138 1.46670 1.23532 1.06891 0.95114 1.04905 1.85384 0.91883 1.11041 1.94954 1.22904 0.95469 0.92397 1.57532 0.90896 1.24997 0.95067 0.98991 0.94561 1.70026 0.99469 1.34483 1.46307 0.86109 0.78417 0.82960 0.77968 1.19622 1.20545 1.20553 1.45975 1.16099 1.56752 1.17458 1.16779 0.82099 0.77788 0.84682 1.90801 1.51112 1.58528 1.38203 1.23459 0.94050 1.05964 0.95770 1.74213 1.19745 1.10426 0.98243 1.84801 1.23504 1.52008 1.34606 1.25835 0.88805 1.03858 0.96142 1.21375 0.97134 1.01328 0.95780 1.20227 0.92543 1.02225 0.98909 0.92808 0.91917 0.93237 0.90182 0.91301 0.90775 0.89620 0.76785 0.89227 0.89258 0.92223 0.75462 0.75971 0.90571 0.90948 0.89372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 8.51 37.16 0.32 -0.93 16 2 C -0.13 -1.04 5.61 -26.74 -0.15 -1.19 16 3 C 0.13 1.19 2.42 -67.93 -0.16 1.03 16 4 H 0.10 0.96 7.58 -51.93 -0.39 0.57 16 5 C 0.11 1.21 5.23 -4.04 -0.02 1.19 16 6 N -0.74 -9.69 5.39 -60.29 -0.32 -10.02 16 7 C 0.53 9.83 7.85 -10.99 -0.09 9.75 16 8 O -0.52 -11.49 15.86 5.56 0.09 -11.40 16 9 C -0.15 -3.13 6.16 36.01 0.22 -2.90 16 10 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 11 C -0.53 -15.32 9.50 30.94 0.29 -15.02 16 12 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 13 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 14 N -0.87 -26.24 13.22 55.49 0.73 -25.51 16 15 Si 0.92 21.52 29.55 -169.99 -5.02 16.50 16 16 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 N -0.71 -6.54 4.47 -54.60 -0.24 -6.78 16 20 C 0.60 6.28 6.41 -12.11 -0.08 6.20 16 21 O -0.51 -6.04 12.48 5.37 0.07 -5.97 16 22 C -0.03 -0.33 7.19 -82.53 -0.59 -0.92 16 23 N -0.33 -3.33 11.84 33.29 0.39 -2.94 16 24 O 0.13 1.06 11.18 17.23 0.19 1.25 16 25 C -0.07 -0.37 12.24 29.69 0.36 0.00 16 26 C -0.15 -1.17 6.34 -104.12 -0.66 -1.83 16 27 C -0.08 -0.50 10.01 36.01 0.36 -0.14 16 28 H 0.05 0.54 5.65 -51.93 -0.29 0.24 16 29 H 0.06 0.59 7.84 -51.93 -0.41 0.18 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.40 4.51 8.14 -40.82 -0.33 4.18 16 36 H 0.09 1.70 8.14 -51.92 -0.42 1.27 16 37 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 38 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 39 H 0.41 3.75 8.36 -40.82 -0.34 3.41 16 40 H 0.22 0.20 8.06 -52.48 -0.42 -0.22 16 41 H 0.08 0.42 8.14 -51.92 -0.42 -0.01 16 42 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.09 0.70 6.89 -51.93 -0.36 0.35 16 LS Contribution 380.75 15.07 5.74 5.74 Total: -1.00 -35.85 380.75 -6.78 -42.63 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -5.90 Total: 3.12 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -0.29 Total: -2.79 kcal Atomic # 7 Polarization: -45.81 SS G_CDS: 0.56 Total: -45.25 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: 0.35 Total: -16.12 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.85 -6.78 -42.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001531083497.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.734 kcal (2) G-P(sol) polarization free energy of solvation -35.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds