Wall clock time and date at job start Sat Apr 11 2020 06:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47341 * 2 1 4 4 H 1.09000 * 109.47321 * 305.00051 * 3 2 1 5 5 C 1.52998 * 109.47095 * 185.00400 * 3 2 1 6 6 N 1.46506 * 109.47237 * 184.99775 * 5 3 2 7 7 C 1.34773 * 119.99969 * 179.72043 * 6 5 3 8 8 O 1.21609 * 120.00089 * 0.02562 * 7 6 5 9 9 C 1.47426 * 119.99871 * 180.02562 * 7 6 5 10 10 C 1.36089 * 126.44504 * 179.71714 * 9 7 6 11 11 O 1.34256 * 106.94707 * 179.90155 * 10 9 7 12 12 C 1.34057 * 108.22688 * 0.35918 * 11 10 9 13 13 C 1.50705 * 125.37964 * 179.80288 * 12 11 10 14 14 N 1.29936 * 109.24002 * 359.77489 * 12 11 10 15 15 N 1.46496 * 109.47150 * 65.00453 * 3 2 1 16 16 C 1.34785 * 119.99543 * 274.99783 * 15 3 2 17 17 O 1.21279 * 120.00253 * 0.02562 * 16 15 3 18 18 C 1.50708 * 119.99625 * 180.02562 * 16 15 3 19 19 S 1.80998 * 109.46904 * 180.02562 * 18 16 15 20 20 C 1.76202 * 99.99653 * 179.97438 * 19 18 16 21 21 H 1.07997 * 120.00453 * 0.02562 * 20 19 18 22 22 C 1.38800 * 119.99578 * 180.02562 * 20 19 18 23 23 N 1.31634 * 119.99907 * 180.02562 * 22 20 19 24 24 Si 1.86806 * 120.00190 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.46975 * 90.00135 * 24 22 20 26 26 H 1.48504 * 109.47064 * 210.00167 * 24 22 20 27 27 H 1.48496 * 109.47017 * 330.00076 * 24 22 20 28 28 H 1.08997 * 109.47305 * 59.99394 * 1 2 3 29 29 H 1.09001 * 109.47437 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46299 * 300.00003 * 1 2 3 31 31 H 1.09007 * 109.46299 * 239.99997 * 2 1 3 32 32 H 1.08997 * 109.47305 * 120.00606 * 2 1 3 33 33 H 1.09001 * 109.47671 * 65.00115 * 5 3 2 34 34 H 1.08998 * 109.47454 * 305.00112 * 5 3 2 35 35 H 0.97005 * 119.99811 * 0.02562 * 6 5 3 36 36 H 1.08002 * 126.52959 * 0.03036 * 10 9 7 37 37 H 1.08996 * 109.47045 * 269.96085 * 13 12 11 38 38 H 1.08993 * 109.46824 * 29.96424 * 13 12 11 39 39 H 1.08998 * 109.46556 * 149.96591 * 13 12 11 40 40 H 0.96996 * 120.00496 * 95.00000 * 15 3 2 41 41 H 1.09003 * 109.47080 * 299.99968 * 18 16 15 42 42 H 1.09000 * 109.47194 * 60.00020 * 18 16 15 43 43 H 0.96995 * 119.99852 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5649 1.4442 -0.1258 6 7 4.0632 2.8167 -0.0061 7 6 5.3863 3.0621 -0.0809 8 8 6.1664 2.1444 -0.2483 9 6 5.8877 4.4432 0.0401 10 6 7.1891 4.8380 -0.0102 11 8 7.1993 6.1722 0.1393 12 6 5.9331 6.5874 0.2863 13 6 5.5013 8.0174 0.4859 14 7 5.1370 5.5621 0.2290 15 7 1.6526 2.0974 1.2518 16 6 0.4353 2.6644 1.3670 17 8 -0.3395 2.6319 0.4345 18 6 0.0369 3.3387 2.6546 19 16 -1.6421 3.9960 2.4969 20 6 -1.8436 4.7071 4.0964 21 1 -1.0431 4.6471 4.8189 22 6 -3.0312 5.3445 4.4279 23 7 -3.1816 5.8762 5.6226 24 14 -4.4156 5.4491 3.1780 25 1 -5.3008 4.2652 3.3196 26 1 -5.2024 6.6865 3.4132 27 1 -3.8441 5.4789 1.8077 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3632 0.5139 0.8901 31 1 1.8932 -0.5139 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.8499 1.0376 -1.0961 34 1 3.9955 0.8309 0.6657 35 1 3.4412 3.5482 0.1314 36 1 8.0497 4.1999 -0.1468 37 1 5.4761 8.2439 1.5517 38 1 6.2077 8.6827 -0.0104 39 1 4.5079 8.1595 0.0606 40 1 2.2721 2.1230 1.9978 41 1 0.0682 2.6146 3.4687 42 1 0.7284 4.1541 2.8667 43 1 -4.0114 6.3220 5.8541 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001531163015.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:27 Heat of formation + Delta-G solvation = -60.146430 kcal Electronic energy + Delta-G solvation = -26755.556170 eV Core-core repulsion = 22735.646537 eV Total energy + Delta-G solvation = -4019.909633 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.79467 -40.20646 -39.37585 -36.57727 -35.29661 -34.06250 -32.59509 -32.51297 -32.43728 -29.63565 -28.59379 -28.02103 -25.62868 -24.91465 -23.03248 -21.81489 -21.58084 -20.66932 -20.44925 -18.62657 -17.82149 -17.29922 -16.88533 -16.77322 -16.44083 -15.97731 -15.39070 -15.26676 -14.97169 -14.76780 -14.28767 -14.17470 -13.86695 -13.68007 -13.56283 -13.51366 -13.28253 -13.00658 -12.90969 -12.80231 -12.40333 -11.87962 -11.61554 -11.54454 -11.31790 -11.26405 -11.17445 -11.02269 -10.85171 -10.59561 -10.54316 -9.87104 -9.57476 -9.48301 -9.27084 -9.02889 -8.98180 -8.51413 -6.92498 -6.29981 -4.01558 0.73436 1.63472 2.19205 2.68308 2.78374 2.94243 2.97781 3.27906 3.32656 3.49001 3.50447 3.63884 4.31686 4.32852 4.39198 4.40725 4.72236 4.82287 4.89841 4.95954 4.99981 5.09183 5.09369 5.17771 5.22401 5.25905 5.31237 5.41150 5.42332 5.70289 5.73483 5.74544 5.80878 5.97477 6.01054 6.05590 6.16222 6.48818 6.55299 6.98438 7.27269 7.55395 7.81159 7.93127 8.40861 8.45764 9.16217 10.79343 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009561 B = 0.002987 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2928.009727 B = 9370.826163 C =11776.063113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.129 4.129 3 C 0.135 3.865 4 H 0.097 0.903 5 C 0.112 3.888 6 N -0.710 5.710 7 C 0.604 3.396 8 O -0.539 6.539 9 C -0.074 4.074 10 C 0.012 3.988 11 O -0.197 6.197 12 C 0.203 3.797 13 C -0.062 4.062 14 N -0.460 5.460 15 N -0.734 5.734 16 C 0.533 3.467 17 O -0.510 6.510 18 C -0.125 4.125 19 S -0.139 6.139 20 C -0.522 4.522 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.881 5.881 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.061 0.939 29 H 0.046 0.954 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.415 0.585 36 H 0.231 0.769 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.106 0.894 40 H 0.400 0.600 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.086 -3.215 -12.035 24.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.168 4.168 3 C 0.029 3.971 4 H 0.115 0.885 5 C -0.012 4.012 6 N -0.362 5.362 7 C 0.390 3.610 8 O -0.417 6.417 9 C -0.194 4.194 10 C -0.062 4.062 11 O -0.083 6.083 12 C -0.007 4.007 13 C -0.119 4.119 14 N -0.191 5.191 15 N -0.389 5.389 16 C 0.319 3.681 17 O -0.384 6.384 18 C -0.276 4.276 19 S 0.087 5.913 20 C -0.669 4.669 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.517 5.517 24 Si 0.681 3.319 25 H -0.192 1.192 26 H -0.200 1.200 27 H -0.159 1.159 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.103 0.897 34 H 0.096 0.904 35 H 0.252 0.748 36 H 0.247 0.753 37 H 0.116 0.884 38 H 0.109 0.891 39 H 0.125 0.875 40 H 0.234 0.766 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 19.550 -3.780 -13.540 24.080 hybrid contribution 0.971 0.398 1.281 1.656 sum 20.521 -3.382 -12.259 24.142 Atomic orbital electron populations 1.21804 0.94028 1.00755 1.03783 1.21878 0.97798 0.94807 1.02328 1.21253 0.92228 0.94811 0.88772 0.88523 1.21767 0.92965 0.82994 1.03472 1.45789 1.07182 1.10520 1.72706 1.16716 0.82514 0.85304 0.76461 1.90829 1.56247 1.44254 1.50347 1.21742 0.91279 0.94374 1.11980 1.25261 0.99968 0.80725 1.00282 1.84408 1.33067 1.22650 1.68211 1.26429 0.76517 0.98484 0.99223 1.20383 1.03505 0.83143 1.04845 1.70822 1.33470 0.97231 1.17587 1.46070 1.17352 1.59292 1.16204 1.20223 0.80903 0.77467 0.89511 1.90714 1.50354 1.57325 1.40042 1.23293 1.03877 1.03027 0.97399 1.84757 1.11977 1.72186 1.22366 1.22322 1.05517 1.41692 0.97379 0.89443 1.24714 0.97802 0.93569 0.95206 1.69940 1.26839 1.35585 1.19367 0.86738 0.82799 0.78568 0.83753 1.19240 1.19965 1.15905 0.92028 0.93519 0.91783 0.91065 0.91570 0.89657 0.90420 0.74848 0.75329 0.88354 0.89075 0.87528 0.76617 0.88636 0.88512 0.91948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 8.52 37.16 0.32 -1.53 16 2 C -0.13 -1.25 5.61 -26.73 -0.15 -1.40 16 3 C 0.13 1.37 2.41 -67.94 -0.16 1.20 16 4 H 0.10 1.14 7.58 -51.93 -0.39 0.75 16 5 C 0.11 1.01 5.23 -4.04 -0.02 0.98 16 6 N -0.71 -7.37 5.38 -61.38 -0.33 -7.70 16 7 C 0.60 7.10 7.81 -12.52 -0.10 7.00 16 8 O -0.54 -7.34 16.89 5.27 0.09 -7.25 16 9 C -0.07 -0.81 6.99 -83.02 -0.58 -1.39 16 10 C 0.01 0.10 11.95 29.96 0.36 0.46 16 11 O -0.20 -1.72 10.73 6.50 0.07 -1.65 16 12 C 0.20 1.82 8.31 -13.08 -0.11 1.71 16 13 C -0.06 -0.31 10.51 36.01 0.38 0.06 16 14 N -0.46 -5.20 11.06 -7.65 -0.08 -5.28 16 15 N -0.73 -8.49 4.47 -53.81 -0.24 -8.73 16 16 C 0.53 8.65 6.42 -10.98 -0.07 8.58 16 17 O -0.51 -9.88 13.00 5.56 0.07 -9.81 16 18 C -0.13 -2.32 6.16 36.01 0.22 -2.10 16 19 S -0.14 -3.43 18.55 -107.50 -1.99 -5.42 16 20 C -0.52 -14.82 10.04 30.94 0.31 -14.51 16 21 H 0.09 2.60 8.03 -52.49 -0.42 2.18 16 22 C 0.10 2.77 5.50 -17.43 -0.10 2.67 16 23 N -0.88 -26.38 13.97 55.49 0.78 -25.60 16 24 Si 0.86 21.54 27.74 -169.99 -4.71 16.82 16 25 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 27 H -0.24 -5.88 6.74 56.52 0.38 -5.50 16 28 H 0.06 0.85 7.85 -51.93 -0.41 0.44 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.98 5.64 -51.93 -0.29 0.69 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.41 4.52 7.87 -40.82 -0.32 4.19 16 36 H 0.23 1.26 8.06 -52.49 -0.42 0.83 16 37 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 39 H 0.11 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.40 3.88 8.60 -40.82 -0.35 3.53 16 41 H 0.10 1.67 8.14 -51.91 -0.42 1.25 16 42 H 0.10 1.69 8.14 -51.92 -0.42 1.27 16 43 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 381.54 15.07 5.75 5.75 Total: -1.00 -35.56 381.54 -6.31 -41.86 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -5.99 Total: 5.26 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: 0.30 Total: 1.75 kcal Atomic # 7 Polarization: -47.44 SS G_CDS: 0.12 Total: -47.32 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: 0.23 Total: -18.71 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.71 Total: 16.82 kcal Atomic # 16 Polarization: -3.43 SS G_CDS: -1.99 Total: -5.42 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.56 -6.31 -41.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001531163015.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.285 kcal (2) G-P(sol) polarization free energy of solvation -35.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds