Wall clock time and date at job start Sat Apr 11 2020 06:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47341 * 2 1 4 4 H 1.09000 * 109.47321 * 305.00051 * 3 2 1 5 5 C 1.52998 * 109.47095 * 185.00400 * 3 2 1 6 6 N 1.46506 * 109.47237 * 184.99775 * 5 3 2 7 7 C 1.34773 * 119.99969 * 179.72043 * 6 5 3 8 8 O 1.21609 * 120.00089 * 0.02562 * 7 6 5 9 9 C 1.47426 * 119.99871 * 180.02562 * 7 6 5 10 10 C 1.36089 * 126.44504 * 179.71714 * 9 7 6 11 11 O 1.34256 * 106.94707 * 179.90155 * 10 9 7 12 12 C 1.34057 * 108.22688 * 0.35918 * 11 10 9 13 13 C 1.50705 * 125.37964 * 179.80288 * 12 11 10 14 14 N 1.29936 * 109.24002 * 359.77489 * 12 11 10 15 15 N 1.46496 * 109.47150 * 65.00453 * 3 2 1 16 16 C 1.34785 * 119.99543 * 274.99783 * 15 3 2 17 17 O 1.21279 * 120.00253 * 0.02562 * 16 15 3 18 18 C 1.50708 * 119.99625 * 180.02562 * 16 15 3 19 19 S 1.80998 * 109.46904 * 180.02562 * 18 16 15 20 20 C 1.76202 * 99.99653 * 179.97438 * 19 18 16 21 21 H 1.07997 * 120.00453 * 0.02562 * 20 19 18 22 22 C 1.38800 * 119.99578 * 180.02562 * 20 19 18 23 23 N 1.31634 * 119.99907 * 180.02562 * 22 20 19 24 24 Si 1.86806 * 120.00190 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.46975 * 90.00135 * 24 22 20 26 26 H 1.48504 * 109.47064 * 210.00167 * 24 22 20 27 27 H 1.48496 * 109.47017 * 330.00076 * 24 22 20 28 28 H 1.08997 * 109.47305 * 59.99394 * 1 2 3 29 29 H 1.09001 * 109.47437 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46299 * 300.00003 * 1 2 3 31 31 H 1.09007 * 109.46299 * 239.99997 * 2 1 3 32 32 H 1.08997 * 109.47305 * 120.00606 * 2 1 3 33 33 H 1.09001 * 109.47671 * 65.00115 * 5 3 2 34 34 H 1.08998 * 109.47454 * 305.00112 * 5 3 2 35 35 H 0.97005 * 119.99811 * 0.02562 * 6 5 3 36 36 H 1.08002 * 126.52959 * 0.03036 * 10 9 7 37 37 H 1.08996 * 109.47045 * 269.96085 * 13 12 11 38 38 H 1.08993 * 109.46824 * 29.96424 * 13 12 11 39 39 H 1.08998 * 109.46556 * 149.96591 * 13 12 11 40 40 H 0.96996 * 120.00496 * 95.00000 * 15 3 2 41 41 H 1.09003 * 109.47080 * 299.99968 * 18 16 15 42 42 H 1.09000 * 109.47194 * 60.00020 * 18 16 15 43 43 H 0.96995 * 119.99852 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5649 1.4442 -0.1258 6 7 4.0632 2.8167 -0.0061 7 6 5.3863 3.0621 -0.0809 8 8 6.1664 2.1444 -0.2483 9 6 5.8877 4.4432 0.0401 10 6 7.1891 4.8380 -0.0102 11 8 7.1993 6.1722 0.1393 12 6 5.9331 6.5874 0.2863 13 6 5.5013 8.0174 0.4859 14 7 5.1370 5.5621 0.2290 15 7 1.6526 2.0974 1.2518 16 6 0.4353 2.6644 1.3670 17 8 -0.3395 2.6319 0.4345 18 6 0.0369 3.3387 2.6546 19 16 -1.6421 3.9960 2.4969 20 6 -1.8436 4.7071 4.0964 21 1 -1.0431 4.6471 4.8189 22 6 -3.0312 5.3445 4.4279 23 7 -3.1816 5.8762 5.6226 24 14 -4.4156 5.4491 3.1780 25 1 -5.3008 4.2652 3.3196 26 1 -5.2024 6.6865 3.4132 27 1 -3.8441 5.4789 1.8077 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3632 0.5139 0.8901 31 1 1.8932 -0.5139 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.8499 1.0376 -1.0961 34 1 3.9955 0.8309 0.6657 35 1 3.4412 3.5482 0.1314 36 1 8.0497 4.1999 -0.1468 37 1 5.4761 8.2439 1.5517 38 1 6.2077 8.6827 -0.0104 39 1 4.5079 8.1595 0.0606 40 1 2.2721 2.1230 1.9978 41 1 0.0682 2.6146 3.4687 42 1 0.7284 4.1541 2.8667 43 1 -4.0114 6.3220 5.8541 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001531163015.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:26 Heat of formation + Delta-G solvation = -89.129430 kcal Electronic energy + Delta-G solvation = -26756.812967 eV Core-core repulsion = 22735.646537 eV Total energy + Delta-G solvation = -4021.166430 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.47927 -41.24689 -40.42741 -37.63020 -36.02774 -34.97543 -34.66369 -33.63123 -33.16528 -30.85675 -29.59659 -28.70242 -27.84011 -25.74521 -23.82877 -22.61477 -22.48576 -21.66026 -21.41724 -19.92616 -19.30026 -18.04873 -17.94480 -17.69410 -17.39275 -17.10422 -16.99124 -16.57788 -16.24116 -15.78745 -15.51130 -15.04413 -14.91497 -14.83084 -14.69601 -14.59388 -14.32446 -13.96677 -13.91511 -13.56566 -13.33194 -13.30263 -13.07260 -12.96221 -12.68752 -12.48231 -12.36325 -12.14884 -11.92457 -11.85632 -11.76637 -11.43645 -11.16374 -10.90868 -10.52109 -10.34140 -10.09257 -9.98034 -8.96984 -8.50880 -6.20824 0.02955 0.90232 1.00152 1.31969 1.47284 1.55601 1.57392 1.61096 1.95655 2.14998 2.23642 2.27499 2.72859 2.86373 2.87563 3.49385 3.66331 3.77404 3.87934 3.99238 4.11809 4.25042 4.39462 4.41454 4.47897 4.50850 4.53796 4.59510 4.64791 4.71561 4.81382 4.84515 4.92768 5.06817 5.17261 5.20905 5.24790 5.47480 5.53116 5.71308 6.12143 6.18605 6.44759 6.51282 6.94412 6.95559 7.21861 8.61754 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009561 B = 0.002987 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2928.009727 B = 9370.826163 C =11776.063113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.123 4.123 3 C 0.141 3.859 4 H 0.082 0.918 5 C 0.119 3.881 6 N -0.708 5.708 7 C 0.604 3.396 8 O -0.562 6.562 9 C -0.106 4.106 10 C 0.027 3.973 11 O -0.196 6.196 12 C 0.201 3.799 13 C -0.061 4.061 14 N -0.492 5.492 15 N -0.712 5.712 16 C 0.541 3.459 17 O -0.544 6.544 18 C -0.114 4.114 19 S -0.167 6.167 20 C -0.530 4.530 21 H 0.059 0.941 22 C 0.046 3.954 23 N -0.918 5.918 24 Si 0.915 3.085 25 H -0.263 1.263 26 H -0.260 1.260 27 H -0.235 1.235 28 H 0.043 0.957 29 H 0.058 0.942 30 H 0.034 0.966 31 H 0.097 0.903 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.412 0.588 36 H 0.258 0.742 37 H 0.109 0.891 38 H 0.114 0.886 39 H 0.106 0.894 40 H 0.412 0.588 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.600 -3.757 -13.179 26.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.162 4.162 3 C 0.036 3.964 4 H 0.100 0.900 5 C -0.004 4.004 6 N -0.359 5.359 7 C 0.391 3.609 8 O -0.442 6.442 9 C -0.225 4.225 10 C -0.047 4.047 11 O -0.082 6.082 12 C -0.008 4.008 13 C -0.118 4.118 14 N -0.223 5.223 15 N -0.366 5.366 16 C 0.326 3.674 17 O -0.420 6.420 18 C -0.265 4.265 19 S 0.060 5.940 20 C -0.678 4.678 21 H 0.078 0.922 22 C -0.160 4.160 23 N -0.556 5.556 24 Si 0.736 3.264 25 H -0.188 1.188 26 H -0.184 1.184 27 H -0.159 1.159 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.053 0.947 31 H 0.115 0.885 32 H 0.099 0.901 33 H 0.115 0.885 34 H 0.107 0.893 35 H 0.248 0.752 36 H 0.274 0.726 37 H 0.127 0.873 38 H 0.133 0.867 39 H 0.124 0.876 40 H 0.249 0.751 41 H 0.126 0.874 42 H 0.127 0.873 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 21.093 -4.336 -14.671 26.057 hybrid contribution 0.656 0.536 1.655 1.859 sum 21.749 -3.801 -13.017 25.630 Atomic orbital electron populations 1.21744 0.96227 1.00760 1.01421 1.21856 0.95570 0.94413 1.04323 1.21306 0.93040 0.94946 0.87107 0.89992 1.21788 0.91576 0.82533 1.04552 1.45814 1.06867 1.10947 1.72229 1.16827 0.82585 0.85481 0.76010 1.90807 1.56711 1.44949 1.51744 1.21810 0.92307 0.94175 1.14183 1.25806 1.00076 0.80819 0.98041 1.84441 1.33017 1.22684 1.68085 1.27159 0.76363 0.99366 0.97892 1.20599 1.04016 0.81399 1.05827 1.70790 1.34517 0.97942 1.19087 1.45833 1.15744 1.57733 1.17314 1.19746 0.81983 0.77610 0.88051 1.90714 1.51693 1.58904 1.40731 1.23283 0.99955 1.03762 0.99492 1.84631 1.17099 1.72463 1.19828 1.22486 1.04845 1.41717 0.98710 0.92233 1.25569 1.00163 0.93300 0.96939 1.70021 1.27921 1.36619 1.21084 0.85865 0.79964 0.79172 0.81351 1.18793 1.18409 1.15877 0.93766 0.92322 0.94730 0.88496 0.90122 0.88532 0.89262 0.75169 0.72621 0.87281 0.86701 0.87591 0.75140 0.87415 0.87317 0.91399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 8.52 71.98 0.61 -2.86 16 2 C -0.12 -2.06 5.61 30.59 0.17 -1.89 16 3 C 0.14 2.59 2.41 44.99 0.11 2.70 16 4 H 0.08 1.84 7.58 -2.39 -0.02 1.82 16 5 C 0.12 1.86 5.23 86.38 0.45 2.31 16 6 N -0.71 -13.74 5.38 -466.36 -2.51 -16.26 16 7 C 0.60 13.53 7.81 86.66 0.68 14.21 16 8 O -0.56 -14.54 16.89 -4.06 -0.07 -14.61 16 9 C -0.11 -2.24 6.99 40.41 0.28 -1.95 16 10 C 0.03 0.42 11.95 67.32 0.80 1.23 16 11 O -0.20 -3.10 10.73 0.33 0.00 -3.10 16 12 C 0.20 3.39 8.31 88.39 0.73 4.12 16 13 C -0.06 -0.53 10.51 71.24 0.75 0.22 16 14 N -0.49 -10.80 11.06 -293.02 -3.24 -14.04 16 15 N -0.71 -15.35 4.47 -442.54 -1.98 -17.32 16 16 C 0.54 17.14 6.42 87.66 0.56 17.70 16 17 O -0.54 -20.96 13.00 -3.03 -0.04 -21.00 16 18 C -0.11 -4.17 6.16 71.24 0.44 -3.73 16 19 S -0.17 -8.23 18.55 -56.49 -1.05 -9.28 16 20 C -0.53 -30.63 10.04 67.95 0.68 -29.95 16 21 H 0.06 3.65 8.03 -2.91 -0.02 3.63 16 22 C 0.05 2.66 5.50 84.86 0.47 3.13 16 23 N -0.92 -55.77 13.97 21.65 0.30 -55.47 16 24 Si 0.91 44.63 27.74 68.60 1.90 46.53 16 25 H -0.26 -12.56 7.11 99.48 0.71 -11.85 16 26 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 27 H -0.23 -11.38 6.74 99.48 0.67 -10.71 16 28 H 0.04 1.20 7.85 -2.39 -0.02 1.18 16 29 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.03 1.03 5.64 -2.38 -0.01 1.02 16 31 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 32 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.41 8.60 7.87 -92.70 -0.73 7.87 16 36 H 0.26 2.25 8.06 -2.91 -0.02 2.23 16 37 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 39 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.41 7.12 8.60 -92.71 -0.80 6.32 16 41 H 0.11 3.69 8.14 -2.39 -0.02 3.67 16 42 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 43 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -78.21 381.54 -0.44 -78.65 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: -0.51 Total: 20.66 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: 6.74 Total: 5.23 kcal Atomic # 7 Polarization: -95.66 SS G_CDS: -7.43 Total: -103.09 kcal Atomic # 8 Polarization: -38.60 SS G_CDS: -0.10 Total: -38.71 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.90 Total: 46.53 kcal Atomic # 16 Polarization: -8.23 SS G_CDS: -1.05 Total: -9.28 kcal Total: -78.21 -0.44 -78.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001531163015.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.480 kcal (2) G-P(sol) polarization free energy of solvation -78.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds