Wall clock time and date at job start Sat Apr 11 2020 06:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21292 * 119.99866 * 2 1 4 4 N 1.34771 * 120.00209 * 180.02562 * 2 1 3 5 5 C 1.39923 * 120.00300 * 185.29802 * 4 2 1 6 6 C 1.38900 * 120.07078 * 33.43663 * 5 4 2 7 7 C 1.38093 * 119.92864 * 179.97438 * 6 5 4 8 8 C 1.38299 * 120.07014 * 0.25522 * 7 6 5 9 9 C 1.38264 * 120.14238 * 359.48403 * 8 7 6 10 10 C 1.50702 * 119.96447 * 180.25688 * 9 8 7 11 11 N 1.46505 * 109.46818 * 270.25948 * 10 9 8 12 12 S 1.65604 * 119.99529 * 164.40021 * 11 10 9 13 13 O 1.42105 * 106.39953 * 176.91899 * 12 11 10 14 14 O 1.42092 * 106.40296 * 309.83832 * 12 11 10 15 15 N 1.65597 * 107.21798 * 63.38327 * 12 11 10 16 16 C 1.46504 * 119.99815 * 264.42837 * 15 12 11 17 17 C 1.46499 * 120.00637 * 84.42779 * 15 12 11 18 18 C 1.50701 * 109.47228 * 95.33927 * 17 15 12 19 19 H 1.08004 * 119.99574 * 4.88525 * 18 17 15 20 20 C 1.37871 * 120.00262 * 184.87527 * 18 17 15 21 21 N 1.31516 * 120.00018 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00185 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47113 * 60.00439 * 22 20 18 24 24 H 1.48502 * 109.47056 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47257 * 300.00369 * 22 20 18 26 26 C 1.38132 * 120.06910 * 0.51925 * 9 8 7 27 27 H 1.08999 * 109.47081 * 240.00075 * 1 2 3 28 28 H 1.08998 * 109.47187 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47376 * 119.99559 * 1 2 3 30 30 H 0.97005 * 120.00339 * 5.29224 * 4 2 1 31 31 H 1.07996 * 120.03066 * 0.02562 * 6 5 4 32 32 H 1.08000 * 119.96127 * 179.97438 * 7 6 5 33 33 H 1.07998 * 119.93073 * 179.74840 * 8 7 6 34 34 H 1.08999 * 109.47411 * 30.25511 * 10 9 8 35 35 H 1.09002 * 109.46929 * 150.26156 * 10 9 8 36 36 H 0.97000 * 120.00250 * 344.39634 * 11 10 9 37 37 H 1.08997 * 109.47153 * 89.99775 * 16 15 12 38 38 H 1.09003 * 109.47300 * 210.00048 * 16 15 12 39 39 H 1.09001 * 109.47129 * 330.00056 * 16 15 12 40 40 H 1.08994 * 109.47350 * 215.34549 * 17 15 12 41 41 H 1.08997 * 109.46710 * 335.34409 * 17 15 12 42 42 H 0.97004 * 120.00420 * 179.97438 * 21 20 18 43 43 H 1.08002 * 120.03505 * 179.76174 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1671 -0.0005 5 6 3.5756 -1.1698 0.1114 6 6 4.2145 -0.2000 0.8733 7 6 5.5912 -0.2057 0.9821 8 6 6.3339 -1.1725 0.3292 9 6 5.7006 -2.1424 -0.4256 10 6 6.5135 -3.1975 -1.1307 11 7 6.8682 -2.7256 -2.4715 12 16 8.0646 -3.4863 -3.3274 13 8 8.1177 -2.8487 -4.5962 14 8 9.1838 -3.5792 -2.4568 15 7 7.5578 -5.0382 -3.6048 16 6 7.9770 -6.1173 -2.7069 17 6 6.6902 -5.3323 -4.7481 18 6 7.5310 -5.7890 -5.9124 19 1 8.5946 -5.9295 -5.7881 20 6 6.9425 -6.0276 -7.1361 21 7 5.6474 -5.8562 -7.2875 22 14 7.9846 -6.5943 -8.5791 23 1 8.6413 -7.8822 -8.2397 24 1 7.1197 -6.7785 -9.7722 25 1 9.0213 -5.5723 -8.8727 26 6 4.3239 -2.1422 -0.5386 27 1 -0.3633 -0.5138 0.8900 28 1 -0.3633 1.0276 0.0005 29 1 -0.3634 -0.5137 -0.8900 30 1 1.6990 -2.0054 -0.0784 31 1 3.6352 0.5572 1.3807 32 1 6.0885 0.5484 1.5741 33 1 7.4107 -1.1724 0.4126 34 1 7.4227 -3.3955 -0.5629 35 1 5.9284 -4.1137 -1.2109 36 1 6.4024 -1.9676 -2.8580 37 1 7.2530 -6.2192 -1.8985 38 1 8.0335 -7.0524 -3.2641 39 1 8.9565 -5.8831 -2.2899 40 1 5.9865 -6.1193 -4.4772 41 1 6.1404 -4.4336 -5.0274 42 1 5.2333 -6.0237 -8.1486 43 1 3.8300 -2.8979 -1.1315 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042996739.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:02 Heat of formation + Delta-G solvation = -83.747882 kcal Electronic energy + Delta-G solvation = -27242.532934 eV Core-core repulsion = 23221.599866 eV Total energy + Delta-G solvation = -4020.933068 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.78789 -38.93825 -36.60364 -35.70080 -35.47294 -35.14002 -34.54711 -32.43293 -31.15107 -31.02575 -28.84426 -27.77491 -25.76950 -25.04783 -22.81906 -22.43449 -22.27352 -20.35207 -18.95426 -18.00757 -17.33086 -17.13687 -16.63825 -16.40535 -16.28809 -15.87969 -15.81350 -15.01231 -14.95928 -14.48626 -14.24677 -13.86645 -13.55388 -13.40621 -13.28196 -13.14449 -13.06864 -12.77187 -12.58961 -12.28193 -12.15889 -11.90010 -11.62678 -11.57350 -11.40765 -11.25562 -11.15641 -11.05669 -10.70918 -10.63024 -10.49897 -10.18078 -10.04284 -9.78259 -9.32778 -9.02513 -8.44370 -8.35054 -8.07166 -6.06771 -4.10448 0.98364 1.09692 1.38980 2.24605 2.72291 3.33809 3.37478 3.42106 3.45961 3.74263 4.16732 4.31118 4.44991 4.51551 4.70243 4.80393 4.90824 4.98328 5.05976 5.16733 5.18109 5.28440 5.29212 5.40435 5.43587 5.54584 5.66501 5.79128 5.95092 6.01001 6.08546 6.13312 6.30018 6.32343 6.45315 6.54949 6.81630 7.02490 7.10876 7.24653 7.39727 7.61558 7.74087 7.91058 8.20099 8.91586 9.54836 11.01845 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014065 B = 0.002776 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.342776 B =10084.011093 C =11376.612522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.509 3.491 3 O -0.526 6.526 4 N -0.675 5.675 5 C 0.140 3.860 6 C -0.118 4.118 7 C -0.103 4.103 8 C -0.115 4.115 9 C -0.075 4.075 10 C 0.163 3.837 11 N -1.130 6.130 12 S 2.782 3.218 13 O -0.962 6.962 14 O -0.999 6.999 15 N -0.997 5.997 16 C 0.094 3.906 17 C 0.259 3.741 18 C -0.529 4.529 19 H 0.060 0.940 20 C 0.062 3.938 21 N -0.897 5.897 22 Si 0.897 3.103 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.274 1.274 26 C -0.127 4.127 27 H 0.091 0.909 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.412 0.588 31 H 0.132 0.868 32 H 0.127 0.873 33 H 0.128 0.872 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.414 0.586 37 H 0.038 0.962 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.032 0.968 41 H 0.038 0.962 42 H 0.264 0.736 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.549 6.590 19.589 22.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.298 3.702 3 O -0.401 6.401 4 N -0.321 5.321 5 C 0.046 3.954 6 C -0.138 4.138 7 C -0.122 4.122 8 C -0.134 4.134 9 C -0.077 4.077 10 C 0.037 3.963 11 N -0.889 5.889 12 S 2.790 3.210 13 O -0.945 6.945 14 O -0.982 6.982 15 N -0.840 5.840 16 C -0.052 4.052 17 C 0.137 3.863 18 C -0.568 4.568 19 H 0.078 0.922 20 C -0.140 4.140 21 N -0.536 5.536 22 Si 0.725 3.275 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.200 1.200 26 C -0.148 4.148 27 H 0.110 0.890 28 H 0.114 0.886 29 H 0.111 0.889 30 H 0.248 0.752 31 H 0.150 0.850 32 H 0.145 0.855 33 H 0.146 0.854 34 H 0.103 0.897 35 H 0.091 0.909 36 H 0.247 0.753 37 H 0.056 0.944 38 H 0.095 0.905 39 H 0.085 0.915 40 H 0.050 0.950 41 H 0.056 0.944 42 H 0.073 0.927 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.416 7.557 19.261 22.336 hybrid contribution -0.469 -0.638 -1.039 1.306 sum -8.885 6.919 18.221 21.420 Atomic orbital electron populations 1.21933 0.90635 1.06041 1.04693 1.21028 0.90947 0.83124 0.75104 1.90760 1.70633 1.31232 1.47501 1.43613 1.05339 1.10024 1.73079 1.17693 0.82634 0.97614 0.97456 1.21125 0.94946 0.99095 0.98633 1.21035 0.93308 0.98431 0.99417 1.21154 1.00373 0.94486 0.97431 1.19654 0.92936 0.97058 0.98025 1.20074 0.98896 0.94752 0.82577 1.56299 1.59185 1.46997 1.26383 1.01948 0.73163 0.73163 0.72768 1.93655 1.85814 1.75228 1.39846 1.93514 1.49368 1.86991 1.68375 1.57621 1.65953 1.22598 1.37782 1.21366 0.98743 0.92410 0.92702 1.19026 0.88809 0.97402 0.81092 1.21456 0.95022 1.45394 0.94928 0.92177 1.24928 0.95054 0.95371 0.98652 1.69904 1.09633 1.49084 1.24962 0.86570 0.80253 0.79205 0.81498 1.20183 1.21192 1.19978 1.20859 0.93473 1.00404 1.00075 0.89005 0.88558 0.88909 0.75157 0.85039 0.85539 0.85421 0.89667 0.90945 0.75311 0.94352 0.90450 0.91503 0.95026 0.94367 0.92658 0.85146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.77 10.32 36.00 0.37 -0.40 16 2 C 0.51 4.57 7.68 -10.99 -0.08 4.49 16 3 O -0.53 -7.07 14.78 5.55 0.08 -6.98 16 4 N -0.67 -5.38 5.34 -9.86 -0.05 -5.44 16 5 C 0.14 1.47 6.28 -83.69 -0.53 0.95 16 6 C -0.12 -1.32 8.66 -39.39 -0.34 -1.66 16 7 C -0.10 -1.07 10.04 -39.61 -0.40 -1.46 16 8 C -0.12 -1.24 9.70 -39.55 -0.38 -1.62 16 9 C -0.07 -0.84 5.28 -104.65 -0.55 -1.39 16 10 C 0.16 1.98 6.38 -5.19 -0.03 1.94 16 11 N -1.13 -16.88 6.04 -11.65 -0.07 -16.95 16 12 S 2.78 54.42 6.06 -107.50 -0.65 53.77 16 13 O -0.96 -23.20 17.31 -57.17 -0.99 -24.19 16 14 O -1.00 -20.24 16.17 -57.17 -0.92 -21.16 16 15 N -1.00 -20.12 3.23 -123.05 -0.40 -20.51 16 16 C 0.09 1.56 10.65 59.85 0.64 2.19 16 17 C 0.26 6.35 5.08 -5.19 -0.03 6.32 16 18 C -0.53 -14.75 9.38 -34.44 -0.32 -15.08 16 19 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 20 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 21 N -0.90 -26.01 13.29 55.43 0.74 -25.28 16 22 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 26 C -0.13 -1.34 9.62 -39.39 -0.38 -1.71 16 27 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 28 H 0.10 0.46 8.12 -51.93 -0.42 0.04 16 29 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.41 1.91 8.82 -40.82 -0.36 1.55 16 31 H 0.13 1.52 6.43 -52.49 -0.34 1.19 16 32 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 33 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 34 H 0.09 0.99 7.72 -51.93 -0.40 0.59 16 35 H 0.07 0.79 8.08 -51.93 -0.42 0.37 16 36 H 0.41 5.86 8.65 -34.48 -0.30 5.56 16 37 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.08 1.30 8.07 -51.93 -0.42 0.89 16 39 H 0.07 1.05 7.00 -51.93 -0.36 0.69 16 40 H 0.03 0.78 8.11 -51.93 -0.42 0.36 16 41 H 0.04 1.00 7.75 -51.93 -0.40 0.60 16 42 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 43 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 381.06 15.07 5.74 5.74 Total: -1.00 -37.27 381.06 -9.61 -46.88 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -5.93 Total: 3.06 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -2.13 Total: -5.77 kcal Atomic # 7 Polarization: -68.40 SS G_CDS: 0.22 Total: -68.18 kcal Atomic # 8 Polarization: -50.51 SS G_CDS: -1.83 Total: -52.34 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: 54.42 SS G_CDS: -0.65 Total: 53.77 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.27 -9.61 -46.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042996739.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.869 kcal (2) G-P(sol) polarization free energy of solvation -37.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds