Wall clock time and date at job start Sat Apr 11 2020 06:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46492 * 109.47308 * 2 1 4 4 C 1.46502 * 120.00207 * 269.99895 * 3 2 1 5 5 C 1.50698 * 109.47010 * 270.00105 * 4 3 2 6 6 H 1.07993 * 120.00301 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99630 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00415 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99964 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47127 * 90.00223 * 9 7 5 11 11 H 1.48503 * 109.47329 * 209.99778 * 9 7 5 12 12 H 1.48494 * 109.47256 * 330.00134 * 9 7 5 13 13 C 1.34781 * 120.00029 * 90.00199 * 3 2 1 14 14 O 1.21282 * 120.00188 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99608 * 359.97438 * 13 3 2 16 16 O 1.45203 * 109.46935 * 179.97438 * 15 13 3 17 17 C 1.34852 * 117.00017 * 179.97438 * 16 15 13 18 18 O 1.21624 * 120.00137 * 0.02562 * 17 16 15 19 19 C 1.46536 * 120.00116 * 180.02562 * 17 16 15 20 20 C 1.39489 * 123.26334 * 270.02812 * 19 17 16 21 21 C 1.50704 * 121.48699 * 359.97060 * 20 19 17 22 22 N 1.29322 * 117.02348 * 179.97438 * 20 19 17 23 23 S 1.69439 * 108.12089 * 359.97438 * 22 20 19 24 24 C 1.39194 * 123.26590 * 89.72654 * 19 17 16 25 25 N 1.37975 * 127.36305 * 359.97438 * 24 19 17 26 26 C 1.46498 * 119.99521 * 179.97438 * 25 24 19 27 27 H 1.08995 * 109.47252 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46732 * 300.00049 * 1 2 3 29 29 H 1.08991 * 109.46957 * 59.99736 * 1 2 3 30 30 H 1.09006 * 109.47165 * 239.99784 * 2 1 3 31 31 H 1.09003 * 109.47099 * 120.00621 * 2 1 3 32 32 H 1.09001 * 109.46844 * 30.00219 * 4 3 2 33 33 H 1.08996 * 109.46818 * 149.99960 * 4 3 2 34 34 H 0.96997 * 120.00513 * 179.97438 * 8 7 5 35 35 H 1.09000 * 109.47323 * 60.00450 * 15 13 3 36 36 H 1.08992 * 109.47448 * 299.99708 * 15 13 3 37 37 H 1.09002 * 109.46430 * 90.00187 * 21 20 19 38 38 H 1.08995 * 109.47332 * 210.00476 * 21 20 19 39 39 H 1.08993 * 109.47164 * 330.00942 * 21 20 19 40 40 H 0.96991 * 119.99792 * 359.97438 * 25 24 19 41 41 H 1.09002 * 109.47393 * 60.00315 * 26 25 24 42 42 H 1.09003 * 109.46984 * 179.97438 * 26 25 24 43 43 H 1.08997 * 109.47607 * 300.00026 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8349 -1.7037 6 1 4.3429 1.2308 -1.0958 7 6 4.1492 2.3895 -2.8779 8 7 3.3492 3.1257 -3.6180 9 14 5.9131 2.0954 -3.4175 10 1 5.9759 0.8743 -4.2602 11 1 6.3924 3.2625 -4.2009 12 1 6.7735 1.9156 -2.2207 13 6 2.2431 2.0165 1.1672 14 8 2.6478 3.1598 1.1673 15 6 1.9913 1.3062 2.4723 16 8 2.3066 2.1955 3.5760 17 6 2.1339 1.7098 4.8221 18 8 1.7311 0.5733 4.9815 19 6 2.4316 2.5513 5.9842 20 6 3.6865 2.6015 6.5912 21 6 4.8407 1.7770 6.0819 22 7 3.8153 3.3870 7.6104 23 16 2.3234 4.1415 7.8860 24 6 1.4912 3.3826 6.5859 25 7 0.1731 3.5596 6.2183 26 6 -0.6797 4.4823 6.9716 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.5817 1.6877 -2.0284 33 1 2.0956 3.1409 -1.1383 34 1 3.6753 3.5162 -4.4439 35 1 2.6212 0.4185 2.5302 36 1 0.9433 1.0125 2.5299 37 1 5.3911 2.3463 5.3328 38 1 5.5043 1.5300 6.9105 39 1 4.4614 0.8587 5.6339 40 1 -0.1887 3.0732 5.4612 41 1 -0.2570 5.4860 6.9275 42 1 -1.6793 4.4901 6.5370 43 1 -0.7374 4.1578 8.0105 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060912034.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:24 Heat of formation + Delta-G solvation = -77.349987 kcal Electronic energy + Delta-G solvation = -27435.197305 eV Core-core repulsion = 23414.541670 eV Total energy + Delta-G solvation = -4020.655635 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.77308 -39.29874 -38.54299 -36.83872 -36.27111 -35.32716 -32.86476 -31.13803 -30.21742 -29.93977 -29.08272 -26.88497 -26.38267 -24.24631 -23.11277 -22.63041 -21.64468 -19.92921 -18.86189 -18.58341 -18.09309 -17.14162 -16.66804 -16.33529 -16.13214 -15.69767 -15.47519 -15.29598 -15.16694 -14.44533 -14.32762 -14.21764 -13.68280 -13.48588 -13.25651 -12.96300 -12.90970 -12.64384 -12.61251 -12.50431 -12.14107 -12.08841 -11.68057 -11.53473 -11.25925 -11.23404 -11.04669 -10.96894 -10.89827 -10.63773 -10.55196 -10.44088 -10.16520 -9.68371 -9.04694 -8.85159 -8.46685 -8.29815 -7.78533 -6.07802 -4.12740 0.60920 0.80319 1.54784 1.94042 2.03447 2.63259 2.71090 3.21552 3.29004 3.36095 3.41087 3.88424 4.34985 4.42299 4.59513 4.80299 4.81541 4.83300 4.94428 5.09156 5.10791 5.14396 5.16580 5.27034 5.32882 5.38526 5.43950 5.54365 5.68517 5.90474 5.95004 6.08389 6.15309 6.25410 6.40066 6.53124 6.68802 6.96335 7.36460 7.44136 7.63959 7.88259 8.18043 8.26402 8.81982 8.96759 9.52513 11.00375 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014244 B = 0.002743 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.246312 B =10205.900735 C =10909.429437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.101 3.899 3 N -0.592 5.592 4 C 0.248 3.752 5 C -0.529 4.529 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.273 1.273 13 C 0.506 3.494 14 O -0.517 6.517 15 C 0.046 3.954 16 O -0.320 6.320 17 C 0.548 3.452 18 O -0.500 6.500 19 C -0.312 4.312 20 C 0.205 3.795 21 C -0.095 4.095 22 N -0.488 5.488 23 S 0.260 5.740 24 C 0.164 3.836 25 N -0.682 5.682 26 C 0.077 3.923 27 H 0.062 0.938 28 H 0.049 0.951 29 H 0.063 0.937 30 H 0.088 0.912 31 H 0.064 0.936 32 H 0.036 0.964 33 H 0.044 0.956 34 H 0.264 0.736 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.414 0.586 41 H 0.069 0.931 42 H 0.092 0.908 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.884 -2.503 21.450 23.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.023 4.023 3 N -0.326 5.326 4 C 0.130 3.870 5 C -0.568 4.568 6 H 0.077 0.923 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.198 1.198 13 C 0.291 3.709 14 O -0.393 6.393 15 C -0.032 4.032 16 O -0.234 6.234 17 C 0.388 3.612 18 O -0.388 6.388 19 C -0.335 4.335 20 C 0.029 3.971 21 C -0.156 4.156 22 N -0.310 5.310 23 S 0.406 5.594 24 C -0.075 4.075 25 N -0.311 5.311 26 C -0.066 4.066 27 H 0.081 0.919 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.106 0.894 31 H 0.083 0.917 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.115 0.885 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.105 0.895 39 H 0.098 0.902 40 H 0.250 0.750 41 H 0.088 0.912 42 H 0.111 0.889 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.392 -0.733 23.131 24.618 hybrid contribution 0.288 -1.631 -2.331 2.860 sum -8.104 -2.364 20.800 22.448 Atomic orbital electron populations 1.22231 0.96583 1.01693 1.02336 1.21512 0.93714 0.83981 1.03083 1.48213 1.63836 1.13388 1.07122 1.19327 0.96497 0.93669 0.77533 1.21427 0.96854 1.32132 1.06347 0.92349 1.24931 0.97938 0.94817 0.96352 1.69925 1.35760 1.33316 1.14329 0.86484 0.84565 0.77690 0.78631 1.20623 1.21058 1.19815 1.19699 0.79809 0.87166 0.84260 1.90728 1.44339 1.17501 1.86693 1.23025 1.02636 0.92884 0.84607 1.86807 1.78130 1.44518 1.13976 1.20079 0.73625 0.84923 0.82534 1.90870 1.41853 1.19062 1.86971 1.18584 0.95429 1.14725 1.04760 1.20745 0.93446 0.93056 0.89885 1.20711 0.94260 0.98374 1.02275 1.76377 1.13640 1.18649 1.22358 1.84036 1.00993 1.46708 1.27693 1.23268 0.89476 0.95673 0.99057 1.43600 1.05730 1.46965 1.34808 1.21983 0.94901 0.92990 0.96768 0.91876 0.93240 0.91782 0.89375 0.91721 0.94654 0.93751 0.92661 0.88507 0.88845 0.88733 0.89460 0.90219 0.74954 0.91216 0.88944 0.91388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 10.24 37.16 0.38 -1.78 16 2 C 0.10 1.55 5.93 -4.04 -0.02 1.52 16 3 N -0.59 -12.16 2.46 -175.06 -0.43 -12.59 16 4 C 0.25 6.34 5.16 -5.19 -0.03 6.31 16 5 C -0.53 -14.77 9.39 -34.44 -0.32 -15.10 16 6 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.26 13.29 55.43 0.74 -25.53 16 9 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 13 C 0.51 10.55 7.75 -10.98 -0.09 10.46 16 14 O -0.52 -13.25 16.08 -14.10 -0.23 -13.48 16 15 C 0.05 0.74 4.51 36.01 0.16 0.90 16 16 O -0.32 -5.42 9.77 -47.59 -0.46 -5.88 16 17 C 0.55 8.24 6.07 34.07 0.21 8.44 16 18 O -0.50 -7.96 16.91 -19.36 -0.33 -8.29 16 19 C -0.31 -4.28 5.76 -105.73 -0.61 -4.89 16 20 C 0.21 2.72 6.75 -83.18 -0.56 2.16 16 21 C -0.09 -1.05 9.96 36.01 0.36 -0.70 16 22 N -0.49 -6.39 11.94 32.63 0.39 -6.00 16 23 S 0.26 2.69 23.02 -107.50 -2.47 0.22 16 24 C 0.16 1.86 7.31 -14.43 -0.11 1.75 16 25 N -0.68 -5.88 5.84 -66.56 -0.39 -6.27 16 26 C 0.08 0.37 10.74 59.85 0.64 1.01 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.59 7.22 -51.93 -0.37 0.22 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.09 1.39 8.07 -51.93 -0.42 0.97 16 31 H 0.06 0.83 6.44 -51.93 -0.33 0.49 16 32 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 33 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 34 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.10 1.39 7.40 -51.93 -0.38 1.00 16 36 H 0.09 1.25 7.18 -51.93 -0.37 0.88 16 37 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.08 0.88 7.40 -51.93 -0.38 0.50 16 40 H 0.41 3.52 8.56 -40.82 -0.35 3.17 16 41 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 42 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 43 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 LS Contribution 386.06 15.07 5.82 5.82 Total: -1.00 -35.90 386.06 -8.40 -44.30 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -5.93 Total: -0.72 kcal Atomic # 6 Polarization: 11.83 SS G_CDS: -0.08 Total: 11.75 kcal Atomic # 7 Polarization: -50.69 SS G_CDS: 0.31 Total: -50.39 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: -1.02 Total: -27.65 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: 2.69 SS G_CDS: -2.47 Total: 0.22 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.90 -8.40 -44.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060912034.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.053 kcal (2) G-P(sol) polarization free energy of solvation -35.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds