Wall clock time and date at job start Sat Apr 11 2020 06:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46492 * 109.47308 * 2 1 4 4 C 1.46502 * 120.00207 * 269.99895 * 3 2 1 5 5 C 1.50698 * 109.47010 * 270.00105 * 4 3 2 6 6 H 1.07993 * 120.00301 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99630 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00415 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99964 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47127 * 90.00223 * 9 7 5 11 11 H 1.48503 * 109.47329 * 209.99778 * 9 7 5 12 12 H 1.48494 * 109.47256 * 330.00134 * 9 7 5 13 13 C 1.34781 * 120.00029 * 90.00199 * 3 2 1 14 14 O 1.21282 * 120.00188 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99608 * 359.97438 * 13 3 2 16 16 O 1.45203 * 109.46935 * 179.97438 * 15 13 3 17 17 C 1.34852 * 117.00017 * 179.97438 * 16 15 13 18 18 O 1.21624 * 120.00137 * 0.02562 * 17 16 15 19 19 C 1.46536 * 120.00116 * 180.02562 * 17 16 15 20 20 C 1.39489 * 123.26334 * 270.02812 * 19 17 16 21 21 C 1.50704 * 121.48699 * 359.97060 * 20 19 17 22 22 N 1.29322 * 117.02348 * 179.97438 * 20 19 17 23 23 S 1.69439 * 108.12089 * 359.97438 * 22 20 19 24 24 C 1.39194 * 123.26590 * 89.72654 * 19 17 16 25 25 N 1.37975 * 127.36305 * 359.97438 * 24 19 17 26 26 C 1.46498 * 119.99521 * 179.97438 * 25 24 19 27 27 H 1.08995 * 109.47252 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46732 * 300.00049 * 1 2 3 29 29 H 1.08991 * 109.46957 * 59.99736 * 1 2 3 30 30 H 1.09006 * 109.47165 * 239.99784 * 2 1 3 31 31 H 1.09003 * 109.47099 * 120.00621 * 2 1 3 32 32 H 1.09001 * 109.46844 * 30.00219 * 4 3 2 33 33 H 1.08996 * 109.46818 * 149.99960 * 4 3 2 34 34 H 0.96997 * 120.00513 * 179.97438 * 8 7 5 35 35 H 1.09000 * 109.47323 * 60.00450 * 15 13 3 36 36 H 1.08992 * 109.47448 * 299.99708 * 15 13 3 37 37 H 1.09002 * 109.46430 * 90.00187 * 21 20 19 38 38 H 1.08995 * 109.47332 * 210.00476 * 21 20 19 39 39 H 1.08993 * 109.47164 * 330.00942 * 21 20 19 40 40 H 0.96991 * 119.99792 * 359.97438 * 25 24 19 41 41 H 1.09002 * 109.47393 * 60.00315 * 26 25 24 42 42 H 1.09003 * 109.46984 * 179.97438 * 26 25 24 43 43 H 1.08997 * 109.47607 * 300.00026 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8349 -1.7037 6 1 4.3429 1.2308 -1.0958 7 6 4.1492 2.3895 -2.8779 8 7 3.3492 3.1257 -3.6180 9 14 5.9131 2.0954 -3.4175 10 1 5.9759 0.8743 -4.2602 11 1 6.3924 3.2625 -4.2009 12 1 6.7735 1.9156 -2.2207 13 6 2.2431 2.0165 1.1672 14 8 2.6478 3.1598 1.1673 15 6 1.9913 1.3062 2.4723 16 8 2.3066 2.1955 3.5760 17 6 2.1339 1.7098 4.8221 18 8 1.7311 0.5733 4.9815 19 6 2.4316 2.5513 5.9842 20 6 3.6865 2.6015 6.5912 21 6 4.8407 1.7770 6.0819 22 7 3.8153 3.3870 7.6104 23 16 2.3234 4.1415 7.8860 24 6 1.4912 3.3826 6.5859 25 7 0.1731 3.5596 6.2183 26 6 -0.6797 4.4823 6.9716 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.5817 1.6877 -2.0284 33 1 2.0956 3.1409 -1.1383 34 1 3.6753 3.5162 -4.4439 35 1 2.6212 0.4185 2.5302 36 1 0.9433 1.0125 2.5299 37 1 5.3911 2.3463 5.3328 38 1 5.5043 1.5300 6.9105 39 1 4.4614 0.8587 5.6339 40 1 -0.1887 3.0732 5.4612 41 1 -0.2570 5.4860 6.9275 42 1 -1.6793 4.4901 6.5370 43 1 -0.7374 4.1578 8.0105 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060912034.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:23 Heat of formation + Delta-G solvation = -101.239951 kcal Electronic energy + Delta-G solvation = -27436.233251 eV Core-core repulsion = 23414.541670 eV Total energy + Delta-G solvation = -4021.691581 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.93319 -40.73758 -39.68675 -37.57010 -37.52669 -36.96416 -34.93833 -32.05320 -31.69525 -30.88137 -30.44492 -28.46071 -27.23373 -25.37133 -24.69882 -24.07557 -22.69744 -20.89086 -20.28780 -19.64681 -19.06684 -18.64532 -18.33456 -17.82038 -17.47350 -17.13470 -16.60931 -16.25438 -16.07193 -16.03404 -15.73983 -15.00665 -14.92047 -14.74380 -14.50844 -14.33190 -13.90224 -13.83119 -13.61304 -13.49331 -13.37245 -13.28053 -13.23620 -13.07506 -12.68624 -12.50788 -12.43215 -12.22963 -12.11260 -12.06593 -11.95337 -11.80331 -11.72094 -11.42804 -10.74325 -10.64247 -9.72776 -9.54707 -9.07955 -8.23481 -6.37791 -0.26265 -0.04467 0.62297 0.89491 0.99873 1.37021 1.40129 1.47701 1.52015 1.61715 1.98972 2.33996 2.47281 3.06834 3.41893 3.53812 3.67570 3.93488 3.96106 4.06069 4.15800 4.17596 4.29551 4.38377 4.46993 4.50179 4.59331 4.59497 4.78305 4.87408 4.95033 5.02709 5.04595 5.09559 5.20225 5.36546 5.43756 5.54207 5.63004 5.79497 5.98992 6.04141 6.45081 6.62702 6.71655 7.21357 7.36671 8.83906 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014244 B = 0.002743 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.246312 B =10205.900735 C =10909.429437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.093 3.907 3 N -0.594 5.594 4 C 0.264 3.736 5 C -0.545 4.545 6 H 0.055 0.945 7 C 0.009 3.991 8 N -0.927 5.927 9 Si 0.966 3.034 10 H -0.262 1.262 11 H -0.282 1.282 12 H -0.273 1.273 13 C 0.499 3.501 14 O -0.578 6.578 15 C 0.058 3.942 16 O -0.341 6.341 17 C 0.560 3.440 18 O -0.510 6.510 19 C -0.351 4.351 20 C 0.197 3.803 21 C -0.095 4.095 22 N -0.519 5.519 23 S 0.304 5.696 24 C 0.165 3.835 25 N -0.674 5.674 26 C 0.066 3.934 27 H 0.097 0.903 28 H 0.058 0.942 29 H 0.044 0.956 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.030 0.970 33 H -0.001 1.001 34 H 0.267 0.733 35 H 0.120 0.880 36 H 0.126 0.874 37 H 0.092 0.908 38 H 0.102 0.898 39 H 0.077 0.923 40 H 0.414 0.586 41 H 0.075 0.925 42 H 0.117 0.883 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.545 -3.849 22.866 25.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.029 4.029 3 N -0.326 5.326 4 C 0.143 3.857 5 C -0.584 4.584 6 H 0.073 0.927 7 C -0.190 4.190 8 N -0.567 5.567 9 Si 0.791 3.209 10 H -0.187 1.187 11 H -0.207 1.207 12 H -0.198 1.198 13 C 0.287 3.713 14 O -0.458 6.458 15 C -0.019 4.019 16 O -0.256 6.256 17 C 0.401 3.599 18 O -0.398 6.398 19 C -0.374 4.374 20 C 0.021 3.979 21 C -0.156 4.156 22 N -0.342 5.342 23 S 0.449 5.551 24 C -0.076 4.076 25 N -0.301 5.301 26 C -0.076 4.076 27 H 0.116 0.884 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.100 0.900 31 H 0.117 0.883 32 H 0.048 0.952 33 H 0.017 0.983 34 H 0.076 0.924 35 H 0.137 0.863 36 H 0.144 0.856 37 H 0.110 0.890 38 H 0.120 0.880 39 H 0.096 0.904 40 H 0.251 0.749 41 H 0.094 0.906 42 H 0.135 0.865 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.106 -2.134 24.554 26.275 hybrid contribution 0.348 -1.143 -2.719 2.970 sum -8.758 -3.277 21.835 23.753 Atomic orbital electron populations 1.22174 0.94242 1.03805 1.01875 1.21882 0.95630 0.80949 1.04453 1.48200 1.63570 1.15248 1.05612 1.18776 0.95540 0.91624 0.79774 1.21715 0.97883 1.32204 1.06593 0.92711 1.25831 1.02325 0.94409 0.96421 1.70040 1.37770 1.34090 1.14792 0.85430 0.79058 0.78203 0.78226 1.18738 1.20717 1.19796 1.20529 0.78374 0.86624 0.85811 1.90692 1.47070 1.20266 1.87730 1.22922 1.04963 0.92153 0.81845 1.86813 1.78619 1.45348 1.14845 1.20182 0.72860 0.84858 0.81983 1.90846 1.42525 1.19521 1.86952 1.18675 0.96590 1.16907 1.05214 1.20924 0.93791 0.93250 0.89943 1.20751 0.94132 0.97996 1.02747 1.76230 1.15780 1.19386 1.22781 1.83776 0.99363 1.45536 1.26423 1.23507 0.90265 0.94868 0.98967 1.43975 1.05007 1.46525 1.34566 1.22337 0.95451 0.92419 0.97392 0.88392 0.92268 0.93729 0.90040 0.88325 0.95219 0.98300 0.92367 0.86256 0.85633 0.88975 0.87966 0.90439 0.74920 0.90646 0.86458 0.89959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.76 10.24 71.98 0.74 -3.02 16 2 C 0.09 2.68 5.93 86.38 0.51 3.20 16 3 N -0.59 -24.61 2.46 -826.15 -2.03 -26.64 16 4 C 0.26 14.00 5.16 85.63 0.44 14.45 16 5 C -0.55 -31.18 9.39 25.60 0.24 -30.94 16 6 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 7 C 0.01 0.53 5.46 84.65 0.46 1.00 16 8 N -0.93 -55.68 13.29 21.45 0.28 -55.40 16 9 Si 0.97 44.74 29.54 68.60 2.03 46.77 16 10 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 12 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 13 C 0.50 21.02 7.75 87.66 0.68 21.70 16 14 O -0.58 -30.86 16.08 15.76 0.25 -30.60 16 15 C 0.06 1.76 4.51 71.24 0.32 2.08 16 16 O -0.34 -11.39 9.77 -51.26 -0.50 -11.89 16 17 C 0.56 16.33 6.07 69.99 0.42 16.76 16 18 O -0.51 -15.44 16.91 19.43 0.33 -15.11 16 19 C -0.35 -9.42 5.76 -20.58 -0.12 -9.54 16 20 C 0.20 5.16 6.75 43.23 0.29 5.45 16 21 C -0.10 -2.11 9.96 71.24 0.71 -1.40 16 22 N -0.52 -13.30 11.94 -50.67 -0.61 -13.90 16 23 S 0.30 5.88 23.02 -56.49 -1.30 4.58 16 24 C 0.17 3.53 7.31 83.96 0.61 4.15 16 25 N -0.67 -10.34 5.84 -364.50 -2.13 -12.47 16 26 C 0.07 0.46 10.74 127.77 1.37 1.83 16 27 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.06 1.25 7.22 -2.39 -0.02 1.24 16 29 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.08 2.48 8.07 -2.38 -0.02 2.46 16 31 H 0.10 2.20 6.44 -2.39 -0.02 2.19 16 32 H 0.03 1.59 8.07 -2.39 -0.02 1.57 16 33 H 0.00 -0.07 7.42 -2.39 -0.02 -0.09 16 34 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 35 H 0.12 3.11 7.40 -2.39 -0.02 3.09 16 36 H 0.13 3.01 7.18 -2.39 -0.02 2.99 16 37 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.08 1.70 7.40 -2.39 -0.02 1.69 16 40 H 0.41 6.32 8.56 -92.72 -0.79 5.53 16 41 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.12 0.27 8.14 -2.39 -0.02 0.25 16 43 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 Total: -1.00 -81.06 386.06 3.27 -77.78 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: 0.26 Total: 11.18 kcal Atomic # 6 Polarization: 19.02 SS G_CDS: 6.69 Total: 25.71 kcal Atomic # 7 Polarization: -103.94 SS G_CDS: -4.48 Total: -108.41 kcal Atomic # 8 Polarization: -57.68 SS G_CDS: 0.08 Total: -57.60 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Atomic # 16 Polarization: 5.88 SS G_CDS: -1.30 Total: 4.58 kcal Total: -81.06 3.27 -77.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060912034.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.457 kcal (2) G-P(sol) polarization free energy of solvation -81.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds