Wall clock time and date at job start Sat Apr 11 2020 06:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42905 * 114.00016 * 2 1 4 4 C 1.52990 * 109.47112 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47234 * 65.00128 * 4 3 2 6 6 C 1.46498 * 119.99841 * 270.00088 * 5 4 3 7 7 C 1.50703 * 109.47165 * 276.61079 * 6 5 4 8 8 H 1.08005 * 119.99778 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00033 * 180.02562 * 7 6 5 10 10 N 1.31520 * 119.99687 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 120.00348 * 359.97438 * 9 7 6 12 12 H 1.48497 * 109.46761 * 90.00280 * 11 9 7 13 13 H 1.48495 * 109.47153 * 210.00421 * 11 9 7 14 14 H 1.48498 * 109.46863 * 330.00558 * 11 9 7 15 15 C 1.34777 * 120.00396 * 89.99657 * 5 4 3 16 16 O 1.21292 * 119.99437 * 5.02692 * 15 5 4 17 17 C 1.50692 * 120.00212 * 185.02321 * 15 5 4 18 18 H 1.09001 * 109.47223 * 43.79838 * 17 15 5 19 19 C 1.52994 * 109.47441 * 283.79157 * 17 15 5 20 20 O 1.42907 * 109.47052 * 163.79415 * 17 15 5 21 21 C 1.35903 * 116.99918 * 208.32749 * 20 17 15 22 22 C 1.38763 * 120.04789 * 354.70870 * 21 20 17 23 23 C 1.38130 * 119.96583 * 180.02562 * 22 21 20 24 24 C 1.38262 * 120.07220 * 359.96960 * 23 22 21 25 25 C 1.38368 * 120.09865 * 0.03279 * 24 23 22 26 26 Cl 1.73599 * 119.98798 * 180.02562 * 25 24 23 27 27 C 1.38283 * 120.02422 * 359.71150 * 25 24 23 28 28 H 1.09004 * 109.46978 * 300.00117 * 1 2 3 29 29 H 1.09000 * 109.46973 * 60.00079 * 1 2 3 30 30 H 1.08994 * 109.46887 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46951 * 59.99846 * 3 2 1 32 32 H 1.09000 * 109.46796 * 300.00012 * 3 2 1 33 33 H 1.09001 * 109.47467 * 305.00038 * 4 3 2 34 34 H 1.09001 * 109.47377 * 184.99541 * 4 3 2 35 35 H 1.09001 * 109.47608 * 36.60810 * 6 5 4 36 36 H 1.09002 * 109.47644 * 156.61031 * 6 5 4 37 37 H 0.97002 * 119.99620 * 179.97438 * 10 9 7 38 38 H 1.09000 * 109.47080 * 55.35626 * 19 17 15 39 39 H 1.08994 * 109.47461 * 295.35727 * 19 17 15 40 40 H 1.09000 * 109.47330 * 175.34821 * 19 17 15 41 41 H 1.07996 * 120.01951 * 0.02562 * 22 21 20 42 42 H 1.08002 * 119.96064 * 179.97438 * 23 22 21 43 43 H 1.08002 * 119.95548 * 180.02562 * 24 23 22 44 44 H 1.08000 * 120.03273 * 180.30377 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.1063 -0.8925 -1.3403 7 6 5.4442 -1.3126 -0.7884 8 1 6.1296 -0.5689 -0.4094 9 6 5.7937 -2.6462 -0.7683 10 7 6.9611 -3.0128 -0.2862 11 14 4.6085 -3.9324 -1.4245 12 1 4.8601 -4.1442 -2.8726 13 1 4.8107 -5.2098 -0.6948 14 1 3.2127 -3.4654 -1.2277 15 6 4.2633 1.3329 -2.3201 16 8 4.2444 2.5416 -2.2203 17 6 4.6074 0.6910 -3.6393 18 1 3.9183 -0.1307 -3.8343 19 6 6.0393 0.1544 -3.5874 20 8 4.4998 1.6608 -4.6834 21 6 4.1881 1.2003 -5.9234 22 6 4.0979 -0.1648 -6.1553 23 6 3.7815 -0.6310 -7.4165 24 6 3.5540 0.2611 -8.4480 25 6 3.6433 1.6229 -8.2200 26 17 3.3565 2.7405 -9.5170 27 6 3.9546 2.0942 -6.9577 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8508 0.5686 0.8427 34 1 3.9785 2.1766 0.0901 35 1 3.3109 -1.3642 -0.7632 36 1 4.0304 -1.2008 -2.3830 37 1 7.2068 -3.9511 -0.2717 38 1 6.1429 -0.5231 -2.7399 39 1 6.7350 0.9859 -3.4749 40 1 6.2600 -0.3819 -4.5103 41 1 4.2749 -0.8625 -5.3501 42 1 3.7117 -1.6936 -7.5969 43 1 3.3064 -0.1055 -9.4332 44 1 4.0195 3.1572 -6.7784 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071140984.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:56 Heat of formation + Delta-G solvation = -90.626261 kcal Electronic energy + Delta-G solvation = -28185.212328 eV Core-core repulsion = 24129.644533 eV Total energy + Delta-G solvation = -4055.567795 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.123 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.54205 -39.29221 -37.81771 -37.29270 -36.33572 -35.19603 -32.76088 -32.11616 -30.78296 -29.96148 -29.37842 -27.79102 -26.16822 -24.42354 -23.14861 -22.78069 -22.60127 -21.49571 -18.73224 -18.43591 -17.13624 -16.81005 -16.43654 -16.06856 -15.91183 -15.75450 -15.32803 -15.10583 -14.85109 -14.75431 -14.26201 -13.92417 -13.80303 -13.53707 -13.16137 -13.01410 -12.68247 -12.39884 -12.15034 -11.96131 -11.94906 -11.75203 -11.65238 -11.56538 -11.43323 -11.12645 -11.04556 -10.90022 -10.86427 -10.76119 -10.56831 -10.30498 -9.68909 -9.54738 -9.16123 -8.97266 -8.77918 -8.27019 -7.88916 -6.29761 -4.31063 1.01872 1.25828 1.89312 2.92696 3.09267 3.11300 3.22808 3.24944 3.54356 3.92641 4.01481 4.20562 4.65473 4.87288 4.91662 4.96692 5.01096 5.13669 5.18160 5.25495 5.32876 5.35731 5.39405 5.52080 5.52393 5.58376 5.69606 5.71050 5.92858 6.02384 6.07928 6.17230 6.24731 6.26137 6.27030 6.34381 6.46957 6.72324 6.91907 7.15167 7.31585 7.37467 7.42896 7.96375 8.31140 8.66822 8.77629 9.28783 10.81890 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010377 B = 0.003581 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2697.739385 B = 7817.824023 C = 8984.185930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.379 6.379 3 C 0.047 3.953 4 C 0.123 3.877 5 N -0.577 5.577 6 C 0.204 3.796 7 C -0.543 4.543 8 H 0.082 0.918 9 C 0.080 3.920 10 N -0.885 5.885 11 Si 0.864 3.136 12 H -0.273 1.273 13 H -0.282 1.282 14 H -0.259 1.259 15 C 0.523 3.477 16 O -0.550 6.550 17 C 0.072 3.928 18 H 0.095 0.905 19 C -0.191 4.191 20 O -0.286 6.286 21 C 0.155 3.845 22 C -0.208 4.208 23 C -0.065 4.065 24 C -0.156 4.156 25 C 0.004 3.996 26 Cl -0.070 7.070 27 C -0.149 4.149 28 H 0.037 0.963 29 H 0.036 0.964 30 H 0.082 0.918 31 H 0.055 0.945 32 H 0.048 0.952 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.051 0.949 36 H 0.024 0.976 37 H 0.268 0.732 38 H 0.131 0.869 39 H 0.066 0.934 40 H 0.061 0.939 41 H 0.140 0.860 42 H 0.135 0.865 43 H 0.132 0.868 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.933 4.505 -10.370 15.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.298 6.298 3 C -0.031 4.031 4 C 0.000 4.000 5 N -0.308 5.308 6 C 0.083 3.917 7 C -0.581 4.581 8 H 0.100 0.900 9 C -0.124 4.124 10 N -0.522 5.522 11 Si 0.690 3.310 12 H -0.198 1.198 13 H -0.208 1.208 14 H -0.183 1.183 15 C 0.309 3.691 16 O -0.428 6.428 17 C 0.013 3.987 18 H 0.113 0.887 19 C -0.248 4.248 20 O -0.198 6.198 21 C 0.108 3.892 22 C -0.227 4.227 23 C -0.083 4.083 24 C -0.175 4.175 25 C -0.023 4.023 26 Cl -0.041 7.041 27 C -0.168 4.168 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.101 0.899 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.113 0.887 34 H 0.111 0.889 35 H 0.069 0.931 36 H 0.042 0.958 37 H 0.078 0.922 38 H 0.149 0.851 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.158 0.842 42 H 0.153 0.847 43 H 0.150 0.850 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -9.695 5.094 -10.294 15.030 hybrid contribution -0.734 -0.811 -0.391 1.162 sum -10.429 4.283 -10.685 15.533 Atomic orbital electron populations 1.22696 0.82029 1.02380 0.99417 1.88018 1.18804 1.27674 1.95267 1.23063 0.95142 0.84848 1.00067 1.21396 0.90897 1.00121 0.87610 1.47712 1.64019 1.08906 1.10199 1.19998 0.98885 0.75427 0.97356 1.21325 1.00421 0.93784 1.42548 0.90038 1.24849 0.94917 0.98195 0.94469 1.69888 1.20481 1.17340 1.44506 0.87016 0.82567 0.81836 0.79589 1.19813 1.20778 1.18328 1.19872 0.77125 0.86916 0.85176 1.90641 1.53311 1.14065 1.84819 1.22371 1.00761 0.90243 0.85289 0.88732 1.22662 0.92631 1.03366 1.06171 1.86190 1.83412 1.35971 1.14255 1.18866 0.93132 0.91828 0.85394 1.21567 1.07047 0.94734 0.99327 1.20903 0.96030 0.99824 0.91533 1.20902 1.05388 0.90803 1.00446 1.20517 1.02381 0.90549 0.88827 1.98365 1.94541 1.62409 1.48761 1.20191 1.06230 1.00532 0.89885 0.94459 0.94574 0.89928 0.92732 0.93376 0.88679 0.88900 0.93112 0.95803 0.92226 0.85136 0.91537 0.91979 0.84226 0.84721 0.84994 0.84109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.49 16 2 O -0.38 -6.14 9.44 -35.23 -0.33 -6.47 16 3 C 0.05 0.70 6.28 37.15 0.23 0.94 16 4 C 0.12 2.14 5.87 -4.05 -0.02 2.12 16 5 N -0.58 -11.41 2.42 -175.06 -0.42 -11.83 16 6 C 0.20 4.30 3.61 -5.19 -0.02 4.28 16 7 C -0.54 -13.32 7.53 -34.44 -0.26 -13.58 16 8 H 0.08 2.24 8.06 -52.48 -0.42 1.82 16 9 C 0.08 2.04 5.47 -17.82 -0.10 1.95 16 10 N -0.89 -24.43 13.96 55.43 0.77 -23.66 16 11 Si 0.86 18.82 27.47 -169.99 -4.67 14.15 16 12 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 13 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 14 H -0.26 -5.44 6.54 56.52 0.37 -5.07 16 15 C 0.52 10.60 6.98 -10.99 -0.08 10.52 16 16 O -0.55 -12.31 16.13 -13.82 -0.22 -12.54 16 17 C 0.07 1.30 1.78 -27.89 -0.05 1.25 16 18 H 0.10 1.57 4.66 -51.93 -0.24 1.33 16 19 C -0.19 -3.44 9.06 37.15 0.34 -3.11 16 20 O -0.29 -5.13 9.37 -38.80 -0.36 -5.49 16 21 C 0.15 2.36 6.63 -39.22 -0.26 2.10 16 22 C -0.21 -2.82 8.45 -39.43 -0.33 -3.15 16 23 C -0.06 -0.73 10.04 -39.61 -0.40 -1.13 16 24 C -0.16 -1.72 9.83 -39.52 -0.39 -2.11 16 25 C 0.00 0.05 6.32 -39.52 -0.25 -0.20 16 26 Cl -0.07 -0.76 28.95 -51.86 -1.50 -2.26 16 27 C -0.15 -2.06 9.77 -39.40 -0.38 -2.45 16 28 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.09 1.68 8.07 -51.93 -0.42 1.26 16 34 H 0.09 1.58 7.36 -51.93 -0.38 1.19 16 35 H 0.05 1.11 6.08 -51.93 -0.32 0.79 16 36 H 0.02 0.48 5.01 -51.93 -0.26 0.22 16 37 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 38 H 0.13 2.69 4.61 -51.93 -0.24 2.45 16 39 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.06 0.98 7.26 -51.93 -0.38 0.60 16 41 H 0.14 1.87 5.51 -52.49 -0.29 1.58 16 42 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 43 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 44 H 0.14 1.87 8.06 -52.49 -0.42 1.45 16 LS Contribution 375.07 15.07 5.65 5.65 Total: -1.00 -29.31 375.07 -7.87 -37.17 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -5.92 Total: 6.34 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: -0.86 Total: -1.06 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: 0.35 Total: -35.49 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: -0.92 Total: -24.50 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -4.67 Total: 14.15 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.50 Total: -2.26 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.31 -7.87 -37.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071140984.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.452 kcal (2) G-P(sol) polarization free energy of solvation -29.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds