Wall clock time and date at job start Sat Apr 11 2020 06:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.46503 * 119.99817 * 300.00252 * 12 2 1 14 14 C 1.34777 * 120.00371 * 119.99612 * 12 2 1 15 15 O 1.21281 * 119.99816 * 0.02562 * 14 12 2 16 16 C 1.50699 * 120.00362 * 179.97438 * 14 12 2 17 17 C 1.52992 * 109.47132 * 180.02562 * 16 14 12 18 18 N 1.46507 * 109.47172 * 180.02562 * 17 16 14 19 19 S 1.65595 * 119.99926 * 165.00597 * 18 17 16 20 20 O 1.42108 * 106.39881 * 178.54109 * 19 18 17 21 21 O 1.42106 * 106.40145 * 311.45525 * 19 18 17 22 22 C 1.76195 * 107.22527 * 64.99833 * 19 18 17 23 23 C 1.38676 * 120.41467 * 269.72125 * 22 19 18 24 24 C 1.38624 * 118.41714 * 179.77842 * 23 22 19 25 25 C 1.38233 * 119.16326 * 0.51208 * 24 23 22 26 26 N 1.31855 * 120.76096 * 359.72844 * 25 24 23 27 27 C 1.31882 * 121.72338 * 359.97438 * 26 25 24 28 28 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 29 29 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 30 30 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 1.08994 * 109.47665 * 90.00431 * 13 12 2 33 33 H 1.09008 * 109.46786 * 210.00039 * 13 12 2 34 34 H 1.08997 * 109.47360 * 329.99480 * 13 12 2 35 35 H 1.09000 * 109.47496 * 300.00831 * 16 14 12 36 36 H 1.09000 * 109.46383 * 60.00794 * 16 14 12 37 37 H 1.08998 * 109.47625 * 300.00138 * 17 16 14 38 38 H 1.08996 * 109.47379 * 60.00532 * 17 16 14 39 39 H 0.97002 * 119.99834 * 344.99865 * 18 17 16 40 40 H 1.07995 * 120.79159 * 0.02562 * 23 22 19 41 41 H 1.08006 * 120.42248 * 180.22392 * 24 23 22 42 42 H 1.07998 * 119.62061 * 179.74250 * 25 24 23 43 43 H 1.08005 * 119.61546 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0930 -1.4282 14 6 2.7931 -0.0354 -2.0834 15 8 3.0865 1.1256 -1.8912 16 6 3.2959 -0.7459 -3.3136 17 6 4.1462 0.2157 -4.1461 18 7 4.6346 -0.4748 -5.3424 19 16 5.2610 0.3965 -6.6036 20 8 5.6713 -0.5503 -7.5807 21 8 4.3322 1.4379 -6.8723 22 6 6.7288 1.1773 -6.0202 23 6 6.6738 2.4420 -5.4540 24 6 7.8531 3.0154 -5.0045 25 6 9.0378 2.3170 -5.1444 26 7 9.0531 1.1178 -5.6924 27 6 7.9500 0.5393 -6.1257 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.7089 1.1611 3.4845 32 1 0.7376 -2.1442 -1.9996 33 1 2.4629 -2.5817 -1.9866 34 1 1.5295 -2.5968 -0.4711 35 1 3.9016 -1.6021 -3.0168 36 1 2.4483 -1.0887 -3.9070 37 1 3.5409 1.0721 -4.4431 38 1 4.9938 0.5582 -3.5525 39 1 4.5910 -1.4424 -5.3957 40 1 5.7340 2.9660 -5.3618 41 1 7.8472 3.9974 -4.5550 42 1 9.9615 2.7585 -4.8005 43 1 8.0018 -0.4443 -6.5689 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103442134.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:27 Heat of formation + Delta-G solvation = -70.237500 kcal Electronic energy + Delta-G solvation = -27284.818877 eV Core-core repulsion = 23264.471662 eV Total energy + Delta-G solvation = -4020.347214 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -40.46431 -39.29932 -37.52989 -36.14737 -36.03677 -35.21493 -33.06065 -32.94626 -31.88405 -30.66610 -28.94732 -26.17031 -25.27855 -24.43520 -24.18125 -23.79863 -20.97943 -19.97477 -18.63401 -18.26302 -17.64353 -17.13551 -16.96246 -16.72409 -16.41259 -15.83625 -15.41096 -15.25377 -14.85870 -14.56723 -14.41933 -14.29511 -13.92622 -13.62312 -13.08764 -13.01435 -12.65857 -12.48553 -12.38975 -12.33250 -12.22400 -11.98282 -11.72353 -11.59739 -11.52775 -11.38518 -11.10975 -10.86590 -10.73316 -10.61497 -10.31826 -10.22252 -10.03968 -9.87980 -9.72066 -9.25154 -9.04659 -8.48297 -7.67586 -6.12792 -4.21178 -0.01029 0.28881 0.76931 2.65047 3.15964 3.21755 3.25325 3.29932 3.32613 3.47182 3.84830 3.94953 3.98610 4.34560 4.37909 4.43106 4.64679 4.67430 4.88434 5.03764 5.07208 5.18474 5.19513 5.32883 5.40277 5.44229 5.56320 5.70237 5.80507 5.96409 5.97856 6.09881 6.30236 6.65908 6.70949 6.78509 7.01099 7.34146 7.35163 7.47224 7.65891 7.95545 8.13953 8.44630 8.75825 8.95100 9.45454 10.92488 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015378 B = 0.002591 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.391971 B =10805.436258 C =11689.285452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.257 3.743 3 H 0.064 0.936 4 C -0.528 4.528 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.275 1.275 11 H -0.285 1.285 12 N -0.591 5.591 13 C 0.082 3.918 14 C 0.505 3.495 15 O -0.554 6.554 16 C -0.147 4.147 17 C 0.130 3.870 18 N -1.116 6.116 19 S 2.706 3.294 20 O -0.957 6.957 21 O -0.950 6.950 22 C -0.736 4.736 23 C 0.028 3.972 24 C -0.191 4.191 25 C 0.151 3.849 26 N -0.498 5.498 27 C 0.200 3.800 28 H 0.093 0.907 29 H 0.011 0.989 30 H 0.029 0.971 31 H 0.264 0.736 32 H 0.044 0.956 33 H 0.054 0.946 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.073 0.927 39 H 0.419 0.581 40 H 0.155 0.845 41 H 0.148 0.852 42 H 0.165 0.835 43 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.280 -1.925 -16.344 19.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.157 3.843 3 H 0.082 0.918 4 C -0.567 4.567 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.200 1.200 11 H -0.211 1.211 12 N -0.322 5.322 13 C -0.062 4.062 14 C 0.291 3.709 15 O -0.433 6.433 16 C -0.189 4.189 17 C 0.004 3.996 18 N -0.877 5.877 19 S 2.793 3.207 20 O -0.947 6.947 21 O -0.939 6.939 22 C -0.823 4.823 23 C 0.002 3.998 24 C -0.212 4.212 25 C -0.005 4.005 26 N -0.207 5.207 27 C 0.041 3.959 28 H 0.112 0.888 29 H 0.030 0.970 30 H 0.048 0.952 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.100 0.900 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.109 0.891 38 H 0.092 0.908 39 H 0.254 0.746 40 H 0.173 0.827 41 H 0.166 0.834 42 H 0.182 0.818 43 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 10.811 -1.340 -16.953 20.152 hybrid contribution 0.008 -0.391 1.617 1.663 sum 10.819 -1.731 -15.337 18.849 Atomic orbital electron populations 1.22085 0.98143 0.99417 1.00853 1.18956 0.90920 0.94550 0.79859 0.91832 1.21309 1.31973 1.13055 0.90314 0.92253 1.24899 0.94928 0.94952 0.98994 1.69879 1.36260 1.22506 1.23823 0.86492 0.79164 0.79310 0.82390 1.20593 1.19953 1.21080 1.48250 1.48742 1.11692 1.23505 1.21632 0.98869 0.83226 1.02506 1.20139 0.79500 0.87118 0.84129 1.90664 1.58637 1.17079 1.76966 1.21825 1.01202 0.99724 0.96151 1.21098 0.98685 0.95242 0.84568 1.55494 1.77952 1.19626 1.34613 1.01644 0.73326 0.73366 0.72390 1.93603 1.83273 1.61716 1.56140 1.93615 1.59872 1.57681 1.82765 1.32023 1.21169 1.09126 1.20031 1.21481 1.00191 0.91331 0.86843 1.22336 0.93613 1.02642 1.02568 1.23216 0.98341 0.89429 0.89519 1.67864 1.30688 1.11163 1.11017 1.22612 0.86166 0.98368 0.88769 0.88837 0.96969 0.95164 0.92630 0.93729 0.92735 0.90026 0.88576 0.88460 0.89088 0.90827 0.74560 0.82692 0.83396 0.81781 0.81050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 8.97 37.16 0.33 -3.07 16 2 C 0.26 6.32 2.64 -69.09 -0.18 6.13 16 3 H 0.06 1.82 6.90 -51.93 -0.36 1.46 16 4 C -0.53 -13.77 7.99 -34.44 -0.28 -14.05 16 5 H 0.06 1.51 7.33 -52.49 -0.38 1.13 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -24.54 11.32 55.43 0.63 -23.91 16 8 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 9 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 12 N -0.59 -11.73 2.75 -175.26 -0.48 -12.21 16 13 C 0.08 1.24 9.24 59.85 0.55 1.79 16 14 C 0.51 9.42 7.67 -10.99 -0.08 9.33 16 15 O -0.55 -12.46 15.31 5.56 0.09 -12.38 16 16 C -0.15 -1.79 4.39 -27.89 -0.12 -1.92 16 17 C 0.13 1.49 5.51 -4.04 -0.02 1.47 16 18 N -1.12 -9.81 6.00 -10.61 -0.06 -9.87 16 19 S 2.71 27.67 5.75 -107.50 -0.62 27.05 16 20 O -0.96 -11.34 17.31 -57.17 -0.99 -12.33 16 21 O -0.95 -12.52 16.82 -57.17 -0.96 -13.48 16 22 C -0.74 -7.32 5.96 -39.44 -0.24 -7.55 16 23 C 0.03 0.27 9.65 -39.28 -0.38 -0.11 16 24 C -0.19 -1.56 10.11 -39.44 -0.40 -1.96 16 25 C 0.15 1.28 11.18 -17.54 -0.20 1.08 16 26 N -0.50 -5.25 10.36 -13.25 -0.14 -5.39 16 27 C 0.20 2.00 10.69 -17.55 -0.19 1.81 16 28 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 29 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.03 0.64 7.67 -51.93 -0.40 0.24 16 31 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.63 6.44 -51.92 -0.33 0.30 16 34 H 0.08 1.35 7.02 -51.93 -0.36 0.99 16 35 H 0.10 0.96 7.40 -51.93 -0.38 0.57 16 36 H 0.10 0.99 8.11 -51.93 -0.42 0.57 16 37 H 0.09 1.15 7.71 -51.93 -0.40 0.75 16 38 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 39 H 0.42 2.65 8.65 -34.47 -0.30 2.35 16 40 H 0.16 1.32 7.70 -52.49 -0.40 0.92 16 41 H 0.15 0.81 8.06 -52.48 -0.42 0.39 16 42 H 0.17 0.86 8.06 -52.49 -0.42 0.43 16 43 H 0.17 1.38 7.63 -52.48 -0.40 0.97 16 LS Contribution 373.24 15.07 5.62 5.62 Total: -1.00 -35.47 373.24 -8.94 -44.41 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -5.71 Total: 2.43 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: -1.29 Total: -5.41 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: -0.06 Total: -51.38 kcal Atomic # 8 Polarization: -36.32 SS G_CDS: -1.87 Total: -38.19 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 16 Polarization: 27.67 SS G_CDS: -0.62 Total: 27.05 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.47 -8.94 -44.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103442134.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.830 kcal (2) G-P(sol) polarization free energy of solvation -35.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds