Wall clock time and date at job start Sat Apr 11 2020 06:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.46503 * 119.99817 * 300.00252 * 12 2 1 14 14 C 1.34777 * 120.00371 * 119.99612 * 12 2 1 15 15 O 1.21281 * 119.99816 * 0.02562 * 14 12 2 16 16 C 1.50699 * 120.00362 * 179.97438 * 14 12 2 17 17 C 1.52992 * 109.47132 * 180.02562 * 16 14 12 18 18 N 1.46507 * 109.47172 * 180.02562 * 17 16 14 19 19 S 1.65595 * 119.99926 * 165.00597 * 18 17 16 20 20 O 1.42108 * 106.39881 * 178.54109 * 19 18 17 21 21 O 1.42106 * 106.40145 * 311.45525 * 19 18 17 22 22 C 1.76195 * 107.22527 * 64.99833 * 19 18 17 23 23 C 1.38676 * 120.41467 * 269.72125 * 22 19 18 24 24 C 1.38624 * 118.41714 * 179.77842 * 23 22 19 25 25 C 1.38233 * 119.16326 * 0.51208 * 24 23 22 26 26 N 1.31855 * 120.76096 * 359.72844 * 25 24 23 27 27 C 1.31882 * 121.72338 * 359.97438 * 26 25 24 28 28 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 29 29 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 30 30 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 1.08994 * 109.47665 * 90.00431 * 13 12 2 33 33 H 1.09008 * 109.46786 * 210.00039 * 13 12 2 34 34 H 1.08997 * 109.47360 * 329.99480 * 13 12 2 35 35 H 1.09000 * 109.47496 * 300.00831 * 16 14 12 36 36 H 1.09000 * 109.46383 * 60.00794 * 16 14 12 37 37 H 1.08998 * 109.47625 * 300.00138 * 17 16 14 38 38 H 1.08996 * 109.47379 * 60.00532 * 17 16 14 39 39 H 0.97002 * 119.99834 * 344.99865 * 18 17 16 40 40 H 1.07995 * 120.79159 * 0.02562 * 23 22 19 41 41 H 1.08006 * 120.42248 * 180.22392 * 24 23 22 42 42 H 1.07998 * 119.62061 * 179.74250 * 25 24 23 43 43 H 1.08005 * 119.61546 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0930 -1.4282 14 6 2.7931 -0.0354 -2.0834 15 8 3.0865 1.1256 -1.8912 16 6 3.2959 -0.7459 -3.3136 17 6 4.1462 0.2157 -4.1461 18 7 4.6346 -0.4748 -5.3424 19 16 5.2610 0.3965 -6.6036 20 8 5.6713 -0.5503 -7.5807 21 8 4.3322 1.4379 -6.8723 22 6 6.7288 1.1773 -6.0202 23 6 6.6738 2.4420 -5.4540 24 6 7.8531 3.0154 -5.0045 25 6 9.0378 2.3170 -5.1444 26 7 9.0531 1.1178 -5.6924 27 6 7.9500 0.5393 -6.1257 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.7089 1.1611 3.4845 32 1 0.7376 -2.1442 -1.9996 33 1 2.4629 -2.5817 -1.9866 34 1 1.5295 -2.5968 -0.4711 35 1 3.9016 -1.6021 -3.0168 36 1 2.4483 -1.0887 -3.9070 37 1 3.5409 1.0721 -4.4431 38 1 4.9938 0.5582 -3.5525 39 1 4.5910 -1.4424 -5.3957 40 1 5.7340 2.9660 -5.3618 41 1 7.8472 3.9974 -4.5550 42 1 9.9615 2.7585 -4.8005 43 1 8.0018 -0.4443 -6.5689 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103442134.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:26 Heat of formation + Delta-G solvation = -97.788239 kcal Electronic energy + Delta-G solvation = -27286.013566 eV Core-core repulsion = 23264.471662 eV Total energy + Delta-G solvation = -4021.541904 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.15136 -40.76565 -38.44495 -37.35088 -37.05755 -36.52815 -34.78213 -33.76744 -32.56169 -32.08794 -30.39923 -27.50052 -27.28545 -25.13904 -25.09347 -24.74365 -22.56898 -20.86668 -19.86353 -19.20064 -18.59825 -18.42917 -18.06379 -17.67500 -17.64218 -17.05090 -16.84406 -16.50643 -15.99781 -15.62365 -15.37167 -15.24125 -15.08701 -14.58219 -14.34166 -14.29138 -13.82169 -13.73229 -13.53031 -13.40100 -13.32175 -13.20363 -13.11712 -12.91205 -12.74594 -12.66459 -12.59771 -12.46045 -12.28370 -12.15829 -12.11390 -11.35640 -11.16225 -10.79111 -10.66244 -10.56389 -10.50037 -10.43727 -9.28287 -8.13385 -6.29736 -0.79342 -0.45316 0.06850 1.42258 1.43740 1.53242 1.81893 1.85321 2.35953 2.43183 2.55670 2.71107 3.14864 3.15640 3.34333 3.64722 3.73224 3.76916 3.89597 4.00890 4.11523 4.24833 4.42490 4.45244 4.59217 4.65933 4.71455 4.79474 4.79781 4.89122 4.91767 4.93592 5.05265 5.09994 5.12827 5.45572 5.50417 5.62622 5.69871 6.05835 6.06556 6.18904 6.66406 6.79113 6.88086 7.34345 7.51362 8.90833 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015378 B = 0.002591 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.391971 B =10805.436258 C =11689.285452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.261 3.739 3 H 0.010 0.990 4 C -0.537 4.537 5 H 0.063 0.937 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.964 3.036 9 H -0.269 1.269 10 H -0.269 1.269 11 H -0.288 1.288 12 N -0.602 5.602 13 C 0.076 3.924 14 C 0.493 3.507 15 O -0.604 6.604 16 C -0.133 4.133 17 C 0.134 3.866 18 N -1.100 6.100 19 S 2.728 3.272 20 O -0.972 6.972 21 O -0.981 6.981 22 C -0.741 4.741 23 C 0.009 3.991 24 C -0.191 4.191 25 C 0.146 3.854 26 N -0.520 5.520 27 C 0.189 3.811 28 H 0.065 0.935 29 H 0.019 0.981 30 H 0.046 0.954 31 H 0.264 0.736 32 H 0.065 0.935 33 H 0.098 0.902 34 H 0.065 0.935 35 H 0.130 0.870 36 H 0.128 0.872 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.434 0.566 40 H 0.158 0.842 41 H 0.174 0.826 42 H 0.196 0.804 43 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.310 -4.002 -16.910 20.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.158 3.842 3 H 0.028 0.972 4 C -0.576 4.576 5 H 0.081 0.919 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.789 3.211 9 H -0.194 1.194 10 H -0.194 1.194 11 H -0.214 1.214 12 N -0.332 5.332 13 C -0.066 4.066 14 C 0.282 3.718 15 O -0.487 6.487 16 C -0.174 4.174 17 C 0.007 3.993 18 N -0.864 5.864 19 S 2.816 3.184 20 O -0.962 6.962 21 O -0.971 6.971 22 C -0.829 4.829 23 C -0.018 4.018 24 C -0.211 4.211 25 C -0.009 4.009 26 N -0.229 5.229 27 C 0.030 3.970 28 H 0.084 0.916 29 H 0.038 0.962 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.116 0.884 34 H 0.084 0.916 35 H 0.148 0.852 36 H 0.146 0.854 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.272 0.728 40 H 0.176 0.824 41 H 0.192 0.808 42 H 0.213 0.787 43 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 11.827 -3.485 -17.560 21.457 hybrid contribution -0.271 0.315 1.775 1.823 sum 11.556 -3.170 -15.786 19.819 Atomic orbital electron populations 1.21874 0.97398 1.00028 0.99838 1.18502 0.91454 0.92330 0.81889 0.97225 1.21607 1.31781 1.13042 0.91132 0.91862 1.25738 0.95146 0.95621 1.02057 1.70030 1.37439 1.23928 1.24353 0.85474 0.78886 0.78211 0.78540 1.19419 1.19381 1.21379 1.48247 1.49031 1.13538 1.22362 1.21907 1.01613 0.80404 1.02671 1.21243 0.78387 0.86797 0.85373 1.90640 1.60163 1.19606 1.78292 1.21808 1.02667 0.99799 0.93152 1.20920 0.98332 0.95011 0.85062 1.55151 1.77639 1.20346 1.33234 1.00790 0.72879 0.72583 0.72122 1.93577 1.83480 1.62122 1.57005 1.93576 1.61220 1.58815 1.83500 1.31877 1.20803 1.09494 1.20757 1.21730 1.01104 0.91574 0.87371 1.22677 0.92966 1.03626 1.01810 1.23788 0.99718 0.88833 0.88574 1.67906 1.30951 1.12243 1.11816 1.22895 0.86104 0.99077 0.88908 0.91647 0.96155 0.93527 0.92726 0.91626 0.88366 0.91613 0.85223 0.85400 0.90616 0.91358 0.72784 0.82444 0.80835 0.78728 0.79720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.25 8.97 71.98 0.65 -5.60 16 2 C 0.26 13.07 2.64 44.24 0.12 13.18 16 3 H 0.01 0.59 6.90 -2.39 -0.02 0.57 16 4 C -0.54 -28.21 7.99 25.60 0.20 -28.00 16 5 H 0.06 3.19 7.33 -2.91 -0.02 3.17 16 6 C 0.01 0.74 5.30 84.66 0.45 1.19 16 7 N -0.92 -52.18 11.32 21.45 0.24 -51.94 16 8 Si 0.96 41.97 29.54 68.60 2.03 43.99 16 9 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 10 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 11 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 12 N -0.60 -23.32 2.75 -826.80 -2.28 -25.59 16 13 C 0.08 2.08 9.24 127.77 1.18 3.26 16 14 C 0.49 18.01 7.67 87.66 0.67 18.68 16 15 O -0.60 -28.01 15.31 -3.03 -0.05 -28.05 16 16 C -0.13 -2.84 4.39 29.85 0.13 -2.71 16 17 C 0.13 2.87 5.51 86.38 0.48 3.34 16 18 N -1.10 -17.07 6.00 -187.49 -1.12 -18.20 16 19 S 2.73 53.39 5.75 -56.49 -0.32 53.06 16 20 O -0.97 -21.84 17.31 -128.00 -2.22 -24.06 16 21 O -0.98 -25.71 16.82 -128.00 -2.15 -27.86 16 22 C -0.74 -14.23 5.96 22.36 0.13 -14.10 16 23 C 0.01 0.17 9.65 22.47 0.22 0.38 16 24 C -0.19 -2.86 10.11 22.36 0.23 -2.63 16 25 C 0.15 2.23 11.18 84.69 0.95 3.18 16 26 N -0.52 -10.31 10.36 -195.84 -2.03 -12.34 16 27 C 0.19 3.60 10.69 84.67 0.90 4.50 16 28 H 0.06 3.45 6.07 -2.39 -0.01 3.44 16 29 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.05 1.98 7.67 -2.39 -0.02 1.96 16 31 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 32 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.10 1.80 6.44 -2.38 -0.02 1.79 16 34 H 0.07 2.02 7.02 -2.39 -0.02 2.01 16 35 H 0.13 1.95 7.40 -2.39 -0.02 1.94 16 36 H 0.13 2.02 8.11 -2.39 -0.02 2.00 16 37 H 0.08 1.89 7.71 -2.39 -0.02 1.87 16 38 H 0.07 1.55 8.10 -2.39 -0.02 1.54 16 39 H 0.43 4.09 8.65 -96.74 -0.84 3.25 16 40 H 0.16 2.73 7.70 -2.91 -0.02 2.71 16 41 H 0.17 1.57 8.06 -2.91 -0.02 1.55 16 42 H 0.20 1.55 8.06 -2.91 -0.02 1.53 16 43 H 0.19 2.77 7.63 -2.91 -0.02 2.75 16 Total: -1.00 -80.05 373.24 -1.39 -81.44 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: 0.21 Total: 14.87 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: 6.30 Total: -5.32 kcal Atomic # 7 Polarization: -102.88 SS G_CDS: -5.19 Total: -108.07 kcal Atomic # 8 Polarization: -75.56 SS G_CDS: -4.42 Total: -79.97 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 43.99 kcal Atomic # 16 Polarization: 53.39 SS G_CDS: -0.32 Total: 53.06 kcal Total: -80.05 -1.39 -81.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103442134.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.345 kcal (2) G-P(sol) polarization free energy of solvation -80.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds