Wall clock time and date at job start Sat Apr 11 2020 06:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35533 * 125.67612 * 2 1 4 4 C 1.35454 * 108.86904 * 179.83057 * 3 2 1 5 5 S 1.76204 * 126.06975 * 180.14738 * 4 3 2 6 6 O 1.42099 * 106.39712 * 23.84911 * 5 4 3 7 7 O 1.42092 * 106.40410 * 156.76712 * 5 4 3 8 8 N 1.65595 * 107.21630 * 270.31004 * 5 4 3 9 9 C 1.46498 * 120.00043 * 269.99709 * 8 5 4 10 10 C 1.50694 * 109.47262 * 95.00151 * 9 8 5 11 11 H 1.08003 * 119.99936 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00224 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99894 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 120.00280 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.47054 * 60.00278 * 14 12 10 16 16 H 1.48500 * 109.47556 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.47427 * 300.00070 * 14 12 10 18 18 C 1.46502 * 120.00243 * 89.99757 * 8 5 4 19 19 C 1.52997 * 109.46983 * 94.99459 * 18 8 5 20 20 C 1.53000 * 117.50300 * 243.74709 * 19 18 8 21 21 C 1.53011 * 117.49978 * 175.08757 * 19 18 8 22 22 C 1.39843 * 107.86623 * 0.43013 * 4 3 2 23 23 C 1.37647 * 125.67822 * 180.31009 * 2 1 3 24 24 C 1.46686 * 126.23330 * 0.02562 * 23 2 1 25 25 N 1.34772 * 119.99876 * 184.98105 * 24 23 2 26 26 O 1.21692 * 120.00173 * 4.99109 * 24 23 2 27 27 H 1.09004 * 109.47261 * 264.11822 * 1 2 3 28 28 H 1.09006 * 109.47311 * 144.12096 * 1 2 3 29 29 H 1.09000 * 109.47343 * 24.11983 * 1 2 3 30 30 H 1.07995 * 125.56758 * 0.02562 * 3 2 1 31 31 H 1.09001 * 109.47022 * 215.00201 * 9 8 5 32 32 H 1.09000 * 109.47108 * 334.99968 * 9 8 5 33 33 H 0.97000 * 120.00352 * 179.97438 * 13 12 10 34 34 H 1.08995 * 109.47450 * 214.99514 * 18 8 5 35 35 H 1.09005 * 109.47238 * 335.00198 * 18 8 5 36 36 H 1.09001 * 115.55377 * 29.42265 * 19 18 8 37 37 H 1.08998 * 117.49853 * 0.02562 * 20 19 18 38 38 H 1.09001 * 117.49940 * 145.02128 * 20 19 18 39 39 H 1.08990 * 117.49903 * 214.98221 * 21 19 18 40 40 H 1.08997 * 117.49527 * 0.02562 * 21 19 18 41 41 H 1.07996 * 126.45589 * 179.70575 * 22 4 3 42 42 H 0.97000 * 120.00297 * 5.05035 * 25 24 23 43 43 H 0.97007 * 120.00056 * 185.05103 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2554 1.1010 0.0000 4 6 3.5521 0.7093 0.0038 5 16 4.9570 1.7728 0.0090 6 8 4.5226 3.0086 0.5597 7 8 6.0312 1.0158 0.5495 8 7 5.3476 2.0766 -1.5713 9 6 6.2862 1.1994 -2.2755 10 6 5.5180 0.1538 -3.0420 11 1 4.4385 0.1434 -3.0076 12 6 6.1931 -0.7902 -3.7863 13 7 7.5075 -0.7779 -3.8277 14 14 5.2409 -2.0867 -4.7358 15 1 4.3495 -1.4236 -5.7212 16 1 6.1923 -2.9758 -5.4498 17 1 4.4240 -2.8912 -3.7921 18 6 4.7547 3.2225 -2.2652 19 6 5.7063 4.4176 -2.1814 20 6 5.2231 5.6534 -1.4197 21 6 5.3187 5.6843 -2.9472 22 6 3.5780 -0.6889 -0.0037 23 6 2.2678 -1.1181 -0.0061 24 6 1.8123 -2.5124 -0.0141 25 7 2.7084 -3.5145 0.0819 26 8 0.6255 -2.7644 -0.1077 27 1 -0.3634 -0.1053 1.0223 28 1 -0.3634 -0.8327 -0.6023 29 1 -0.3634 0.9379 -0.4199 30 1 1.9082 2.1236 0.0004 31 1 6.8858 1.7902 -2.9680 32 1 6.9405 0.7123 -1.5525 33 1 7.9826 -1.4422 -4.3510 34 1 4.5848 2.9660 -3.3108 35 1 3.8054 3.4803 -1.7954 36 1 6.7663 4.1712 -2.1200 37 1 4.2274 5.6149 -0.9779 38 1 5.9653 6.2202 -0.8575 39 1 6.1237 6.2713 -3.3891 40 1 4.3856 5.6663 -3.5102 41 1 4.4583 -1.3144 -0.0076 42 1 3.6459 -3.3144 0.2298 43 1 2.4158 -4.4361 0.0030 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103495812.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:42 Heat of formation + Delta-G solvation = -37.496865 kcal Electronic energy + Delta-G solvation = -28776.947003 eV Core-core repulsion = 24758.019529 eV Total energy + Delta-G solvation = -4018.927474 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 4.94 seconds Orbital eigenvalues (eV) -41.37677 -38.76781 -37.52860 -36.46325 -35.10175 -34.75511 -34.05577 -32.69667 -32.38735 -29.35595 -27.80399 -26.71595 -25.37109 -23.24559 -22.49208 -22.00555 -21.29358 -20.21199 -19.74255 -18.56380 -17.73768 -16.85531 -16.70955 -16.44741 -15.93120 -15.66103 -15.53575 -15.16334 -14.70594 -14.45017 -14.26098 -14.11348 -13.99661 -13.54356 -13.33332 -12.65601 -12.57638 -12.45142 -12.34182 -12.27959 -11.73992 -11.46023 -11.38633 -11.25378 -11.15983 -11.10912 -10.82815 -10.70440 -10.50950 -10.17331 -10.11984 -10.06782 -9.76990 -9.71353 -9.48597 -9.02991 -8.47995 -8.33810 -8.01417 -6.09683 -4.15100 1.21431 1.46943 2.25212 2.63926 3.24568 3.30807 3.32912 3.35549 3.63261 3.82599 4.19322 4.37242 4.51252 4.66664 4.82319 4.86808 5.05217 5.10903 5.13507 5.24185 5.25366 5.33050 5.45663 5.53432 5.65697 5.66681 5.88004 5.92112 6.09821 6.19151 6.20818 6.40806 6.50601 6.58127 6.71866 6.76064 6.83971 7.08938 7.29611 7.37066 7.46621 7.67317 7.88125 8.17921 8.18577 8.90060 9.50407 10.98262 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.008653 B = 0.005826 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3234.947129 B = 4804.855028 C = 6798.998107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.405 5.405 3 C 0.132 3.868 4 C -0.737 4.737 5 S 2.716 3.284 6 O -0.979 6.979 7 O -0.961 6.961 8 N -0.980 5.980 9 C 0.245 3.755 10 C -0.535 4.535 11 H 0.061 0.939 12 C 0.066 3.934 13 N -0.890 5.890 14 Si 0.889 3.111 15 H -0.278 1.278 16 H -0.287 1.287 17 H -0.277 1.277 18 C 0.165 3.835 19 C -0.164 4.164 20 C -0.175 4.175 21 C -0.182 4.182 22 C -0.021 4.021 23 C -0.077 4.077 24 C 0.602 3.398 25 N -0.841 5.841 26 O -0.561 6.561 27 H 0.078 0.922 28 H 0.102 0.898 29 H 0.086 0.914 30 H 0.184 0.816 31 H 0.041 0.959 32 H 0.053 0.947 33 H 0.264 0.736 34 H 0.085 0.915 35 H 0.065 0.935 36 H 0.108 0.892 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.161 0.839 42 H 0.409 0.591 43 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.703 4.140 6.050 12.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.076 5.076 3 C -0.011 4.011 4 C -0.829 4.829 5 S 2.804 3.196 6 O -0.970 6.970 7 O -0.952 6.952 8 N -0.817 5.817 9 C 0.123 3.877 10 C -0.575 4.575 11 H 0.079 0.921 12 C -0.137 4.137 13 N -0.528 5.528 14 Si 0.717 3.283 15 H -0.204 1.204 16 H -0.213 1.213 17 H -0.202 1.202 18 C 0.038 3.962 19 C -0.184 4.184 20 C -0.212 4.212 21 C -0.220 4.220 22 C -0.046 4.046 23 C -0.188 4.188 24 C 0.389 3.611 25 N -0.404 5.404 26 O -0.441 6.441 27 H 0.096 0.904 28 H 0.121 0.879 29 H 0.105 0.895 30 H 0.201 0.799 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.103 0.897 35 H 0.084 0.916 36 H 0.126 0.874 37 H 0.115 0.885 38 H 0.106 0.894 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.179 0.821 42 H 0.239 0.761 43 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -10.313 4.250 6.629 12.976 hybrid contribution -0.661 -1.515 -1.102 1.987 sum -10.974 2.735 5.528 12.589 Atomic orbital electron populations 1.22328 0.75878 1.05151 1.04331 1.44051 1.06947 1.05106 1.51510 1.21776 0.88749 0.91846 0.98744 1.31355 1.15318 1.09847 1.26347 1.01073 0.73019 0.72661 0.72833 1.93499 1.83676 1.42562 1.77247 1.93527 1.51729 1.72877 1.77038 1.57364 1.57373 1.36167 1.30843 1.19230 0.87507 0.88000 0.92961 1.21523 0.93601 1.12886 1.29470 0.92057 1.24896 0.94728 0.97545 0.96500 1.69917 1.06308 1.35707 1.40881 0.86716 0.79681 0.81674 0.80250 1.20387 1.21252 1.20219 1.20592 0.93283 0.83287 0.98994 1.22876 1.01372 0.89704 1.04466 1.23000 1.02872 1.01760 0.93546 1.22918 1.02918 1.01492 0.94655 1.21037 0.94951 0.92922 0.95725 1.20024 0.90437 0.87545 1.20776 1.16863 0.85290 0.83920 0.75027 1.43451 1.12047 1.08947 1.75945 1.90790 1.16285 1.85142 1.51929 0.90367 0.87927 0.89496 0.79922 0.94128 0.92878 0.92603 0.89686 0.91622 0.87353 0.88546 0.89392 0.89224 0.89034 0.82133 0.76148 0.76080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.69 10.49 59.85 0.63 1.31 16 2 N -0.40 -5.81 3.16 -120.23 -0.38 -6.19 16 3 C 0.13 1.91 11.11 -16.91 -0.19 1.72 16 4 C -0.74 -12.76 6.17 -39.97 -0.25 -13.00 16 5 S 2.72 51.96 5.79 -107.50 -0.62 51.34 16 6 O -0.98 -18.45 16.82 -57.18 -0.96 -19.41 16 7 O -0.96 -21.43 16.42 -57.18 -0.94 -22.37 16 8 N -0.98 -19.23 2.77 -115.67 -0.32 -19.55 16 9 C 0.24 5.80 5.43 -5.20 -0.03 5.78 16 10 C -0.54 -13.55 9.38 -34.44 -0.32 -13.88 16 11 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 12 C 0.07 1.74 5.46 -17.82 -0.10 1.65 16 13 N -0.89 -24.70 13.29 55.43 0.74 -23.96 16 14 Si 0.89 20.49 29.54 -169.99 -5.02 15.47 16 15 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 16 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 18 C 0.17 2.75 5.63 -4.04 -0.02 2.73 16 19 C -0.16 -2.54 6.01 -90.62 -0.54 -3.09 16 20 C -0.17 -2.37 10.18 -26.69 -0.27 -2.64 16 21 C -0.18 -2.30 10.26 -26.69 -0.27 -2.57 16 22 C -0.02 -0.36 10.14 -39.12 -0.40 -0.75 16 23 C -0.08 -1.24 6.89 -81.98 -0.56 -1.80 16 24 C 0.60 9.24 8.05 -12.85 -0.10 9.14 16 25 N -0.84 -9.92 8.85 30.26 0.27 -9.65 16 26 O -0.56 -9.63 15.61 5.20 0.08 -9.55 16 27 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.10 1.24 6.54 -51.93 -0.34 0.90 16 29 H 0.09 0.66 8.12 -51.93 -0.42 0.24 16 30 H 0.18 2.00 8.06 -52.49 -0.42 1.58 16 31 H 0.04 1.00 8.11 -51.93 -0.42 0.58 16 32 H 0.05 1.38 6.91 -51.93 -0.36 1.02 16 33 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 34 H 0.08 1.44 8.11 -51.93 -0.42 1.01 16 35 H 0.07 0.95 7.34 -51.93 -0.38 0.57 16 36 H 0.11 1.80 8.14 -51.93 -0.42 1.38 16 37 H 0.10 1.28 8.03 -51.93 -0.42 0.86 16 38 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.16 2.64 7.49 -52.49 -0.39 2.25 16 42 H 0.41 4.23 7.77 -40.82 -0.32 3.92 16 43 H 0.41 3.90 8.93 -40.82 -0.36 3.54 16 LS Contribution 381.00 15.07 5.74 5.74 Total: -1.00 -33.96 381.00 -9.77 -43.73 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -5.92 Total: 9.81 kcal Atomic # 6 Polarization: -12.99 SS G_CDS: -2.43 Total: -15.42 kcal Atomic # 7 Polarization: -59.65 SS G_CDS: 0.30 Total: -59.35 kcal Atomic # 8 Polarization: -49.51 SS G_CDS: -1.82 Total: -51.33 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 16 Polarization: 51.96 SS G_CDS: -0.62 Total: 51.34 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.96 -9.77 -43.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103495812.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.233 kcal (2) G-P(sol) polarization free energy of solvation -33.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.94 seconds