Wall clock time and date at job start Sat Apr 11 2020 06:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35533 * 125.67612 * 2 1 4 4 C 1.35454 * 108.86904 * 179.83057 * 3 2 1 5 5 S 1.76204 * 126.06975 * 180.14738 * 4 3 2 6 6 O 1.42099 * 106.39712 * 23.84911 * 5 4 3 7 7 O 1.42092 * 106.40410 * 156.76712 * 5 4 3 8 8 N 1.65595 * 107.21630 * 270.31004 * 5 4 3 9 9 C 1.46498 * 120.00043 * 269.99709 * 8 5 4 10 10 C 1.50694 * 109.47262 * 95.00151 * 9 8 5 11 11 H 1.08003 * 119.99936 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00224 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99894 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 120.00280 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.47054 * 60.00278 * 14 12 10 16 16 H 1.48500 * 109.47556 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.47427 * 300.00070 * 14 12 10 18 18 C 1.46502 * 120.00243 * 89.99757 * 8 5 4 19 19 C 1.52997 * 109.46983 * 94.99459 * 18 8 5 20 20 C 1.53000 * 117.50300 * 243.74709 * 19 18 8 21 21 C 1.53011 * 117.49978 * 175.08757 * 19 18 8 22 22 C 1.39843 * 107.86623 * 0.43013 * 4 3 2 23 23 C 1.37647 * 125.67822 * 180.31009 * 2 1 3 24 24 C 1.46686 * 126.23330 * 0.02562 * 23 2 1 25 25 N 1.34772 * 119.99876 * 184.98105 * 24 23 2 26 26 O 1.21692 * 120.00173 * 4.99109 * 24 23 2 27 27 H 1.09004 * 109.47261 * 264.11822 * 1 2 3 28 28 H 1.09006 * 109.47311 * 144.12096 * 1 2 3 29 29 H 1.09000 * 109.47343 * 24.11983 * 1 2 3 30 30 H 1.07995 * 125.56758 * 0.02562 * 3 2 1 31 31 H 1.09001 * 109.47022 * 215.00201 * 9 8 5 32 32 H 1.09000 * 109.47108 * 334.99968 * 9 8 5 33 33 H 0.97000 * 120.00352 * 179.97438 * 13 12 10 34 34 H 1.08995 * 109.47450 * 214.99514 * 18 8 5 35 35 H 1.09005 * 109.47238 * 335.00198 * 18 8 5 36 36 H 1.09001 * 115.55377 * 29.42265 * 19 18 8 37 37 H 1.08998 * 117.49853 * 0.02562 * 20 19 18 38 38 H 1.09001 * 117.49940 * 145.02128 * 20 19 18 39 39 H 1.08990 * 117.49903 * 214.98221 * 21 19 18 40 40 H 1.08997 * 117.49527 * 0.02562 * 21 19 18 41 41 H 1.07996 * 126.45589 * 179.70575 * 22 4 3 42 42 H 0.97000 * 120.00297 * 5.05035 * 25 24 23 43 43 H 0.97007 * 120.00056 * 185.05103 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2554 1.1010 0.0000 4 6 3.5521 0.7093 0.0038 5 16 4.9570 1.7728 0.0090 6 8 4.5226 3.0086 0.5597 7 8 6.0312 1.0158 0.5495 8 7 5.3476 2.0766 -1.5713 9 6 6.2862 1.1994 -2.2755 10 6 5.5180 0.1538 -3.0420 11 1 4.4385 0.1434 -3.0076 12 6 6.1931 -0.7902 -3.7863 13 7 7.5075 -0.7779 -3.8277 14 14 5.2409 -2.0867 -4.7358 15 1 4.3495 -1.4236 -5.7212 16 1 6.1923 -2.9758 -5.4498 17 1 4.4240 -2.8912 -3.7921 18 6 4.7547 3.2225 -2.2652 19 6 5.7063 4.4176 -2.1814 20 6 5.2231 5.6534 -1.4197 21 6 5.3187 5.6843 -2.9472 22 6 3.5780 -0.6889 -0.0037 23 6 2.2678 -1.1181 -0.0061 24 6 1.8123 -2.5124 -0.0141 25 7 2.7084 -3.5145 0.0819 26 8 0.6255 -2.7644 -0.1077 27 1 -0.3634 -0.1053 1.0223 28 1 -0.3634 -0.8327 -0.6023 29 1 -0.3634 0.9379 -0.4199 30 1 1.9082 2.1236 0.0004 31 1 6.8858 1.7902 -2.9680 32 1 6.9405 0.7123 -1.5525 33 1 7.9826 -1.4422 -4.3510 34 1 4.5848 2.9660 -3.3108 35 1 3.8054 3.4803 -1.7954 36 1 6.7663 4.1712 -2.1200 37 1 4.2274 5.6149 -0.9779 38 1 5.9653 6.2202 -0.8575 39 1 6.1237 6.2713 -3.3891 40 1 4.3856 5.6663 -3.5102 41 1 4.4583 -1.3144 -0.0076 42 1 3.6459 -3.3144 0.2298 43 1 2.4158 -4.4361 0.0030 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103495812.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:38 Heat of formation + Delta-G solvation = -62.506131 kcal Electronic energy + Delta-G solvation = -28778.031486 eV Core-core repulsion = 24758.019529 eV Total energy + Delta-G solvation = -4020.011957 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.54404 -39.94386 -38.77993 -38.04616 -36.68953 -36.31797 -35.15355 -34.29496 -33.79094 -30.54540 -29.55455 -27.71720 -26.96094 -24.48374 -24.23779 -23.04832 -22.54431 -21.46538 -20.88841 -19.81023 -19.14695 -18.49530 -18.24037 -17.80758 -17.24041 -17.03791 -16.75513 -16.50974 -16.18976 -15.95238 -15.39205 -15.30905 -15.19828 -14.97004 -14.50411 -14.34406 -13.91704 -13.75374 -13.43865 -13.40690 -13.32780 -13.07503 -12.99422 -12.85136 -12.78003 -12.48361 -12.30456 -12.20260 -12.12466 -11.87982 -11.71710 -11.35470 -11.12607 -10.84682 -10.65517 -10.52672 -10.23691 -9.65740 -9.53415 -8.11493 -6.23110 -0.28210 0.29495 0.97645 1.42065 1.43287 1.50628 1.57847 2.13860 2.32371 2.47187 2.61743 3.01825 3.10070 3.20499 3.41812 3.80470 3.89564 3.92393 4.00493 4.10127 4.18329 4.25799 4.35024 4.43195 4.45971 4.54401 4.67760 4.84678 4.91003 4.97115 5.14458 5.18376 5.32641 5.38250 5.41085 5.43406 5.60023 5.61878 5.77565 5.83091 6.01085 6.05106 6.18387 6.23584 6.88773 7.11956 7.45811 8.96339 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.008653 B = 0.005826 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3234.947129 B = 4804.855028 C = 6798.998107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.402 5.402 3 C 0.149 3.851 4 C -0.762 4.762 5 S 2.727 3.273 6 O -0.977 6.977 7 O -1.003 7.003 8 N -0.984 5.984 9 C 0.262 3.738 10 C -0.532 4.532 11 H 0.066 0.934 12 C 0.018 3.982 13 N -0.926 5.926 14 Si 0.947 3.053 15 H -0.274 1.274 16 H -0.287 1.287 17 H -0.268 1.268 18 C 0.160 3.840 19 C -0.196 4.196 20 C -0.170 4.170 21 C -0.160 4.160 22 C -0.043 4.043 23 C -0.085 4.085 24 C 0.597 3.403 25 N -0.826 5.826 26 O -0.582 6.582 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.124 0.876 30 H 0.223 0.777 31 H 0.022 0.978 32 H 0.022 0.978 33 H 0.264 0.736 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.104 0.896 38 H 0.092 0.908 39 H 0.100 0.900 40 H 0.109 0.891 41 H 0.155 0.845 42 H 0.416 0.584 43 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.486 5.024 5.782 14.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.072 5.072 3 C 0.005 3.995 4 C -0.856 4.856 5 S 2.819 3.181 6 O -0.967 6.967 7 O -0.993 6.993 8 N -0.821 5.821 9 C 0.138 3.862 10 C -0.572 4.572 11 H 0.084 0.916 12 C -0.182 4.182 13 N -0.566 5.566 14 Si 0.773 3.227 15 H -0.199 1.199 16 H -0.212 1.212 17 H -0.193 1.193 18 C 0.035 3.965 19 C -0.216 4.216 20 C -0.207 4.207 21 C -0.197 4.197 22 C -0.069 4.069 23 C -0.196 4.196 24 C 0.384 3.616 25 N -0.390 5.390 26 O -0.464 6.464 27 H 0.111 0.889 28 H 0.107 0.893 29 H 0.142 0.858 30 H 0.240 0.760 31 H 0.040 0.960 32 H 0.040 0.960 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.111 0.889 36 H 0.104 0.896 37 H 0.123 0.877 38 H 0.111 0.889 39 H 0.118 0.882 40 H 0.127 0.873 41 H 0.172 0.828 42 H 0.247 0.753 43 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -13.079 5.146 6.367 15.430 hybrid contribution 0.163 -1.754 -0.960 2.006 sum -12.916 3.392 5.407 14.408 Atomic orbital electron populations 1.22618 0.73483 1.06649 1.05391 1.44352 1.08351 1.04429 1.50074 1.22329 0.87633 0.93416 0.96141 1.30973 1.15762 1.09516 1.29390 1.00423 0.72962 0.72503 0.72232 1.93484 1.83617 1.42588 1.77022 1.93472 1.54192 1.73783 1.77877 1.57235 1.57271 1.36695 1.30856 1.18722 0.87692 0.87961 0.91798 1.21758 0.93787 1.12829 1.28791 0.91619 1.25636 0.95417 0.99567 0.97566 1.70041 1.07822 1.36709 1.42035 0.85784 0.78468 0.79386 0.79083 1.19900 1.21223 1.19304 1.20813 0.94500 0.82538 0.98679 1.22786 1.00059 0.90605 1.08167 1.23091 1.03225 0.99943 0.94475 1.23030 1.03838 0.98570 0.94298 1.21110 0.95581 0.93203 0.96961 1.20171 0.90332 0.88515 1.20603 1.16916 0.85348 0.84197 0.75171 1.43378 1.12073 1.09097 1.74407 1.90779 1.17035 1.85394 1.53233 0.88902 0.89324 0.85760 0.76007 0.95977 0.95975 0.92655 0.90268 0.88919 0.89623 0.87747 0.88907 0.88151 0.87253 0.82782 0.75314 0.74701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.05 10.49 127.77 1.34 2.39 16 2 N -0.40 -10.46 3.16 -534.31 -1.69 -12.15 16 3 C 0.15 3.90 11.11 83.48 0.93 4.82 16 4 C -0.76 -25.62 6.17 22.01 0.14 -25.48 16 5 S 2.73 104.71 5.79 -56.49 -0.33 104.38 16 6 O -0.98 -35.59 16.82 -128.00 -2.15 -37.74 16 7 O -1.00 -46.54 16.42 -128.00 -2.10 -48.64 16 8 N -0.98 -39.10 2.77 -519.86 -1.44 -40.54 16 9 C 0.26 12.91 5.43 85.63 0.47 13.37 16 10 C -0.53 -27.30 9.38 25.60 0.24 -27.06 16 11 H 0.07 3.26 7.81 -2.91 -0.02 3.23 16 12 C 0.02 0.94 5.46 84.65 0.46 1.40 16 13 N -0.93 -52.71 13.29 21.45 0.28 -52.42 16 14 Si 0.95 41.91 29.54 68.60 2.03 43.94 16 15 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 16 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 17 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 18 C 0.16 5.19 5.63 86.38 0.49 5.68 16 19 C -0.20 -5.96 6.01 -10.79 -0.06 -6.03 16 20 C -0.17 -4.28 10.18 30.62 0.31 -3.97 16 21 C -0.16 -3.67 10.26 30.62 0.31 -3.35 16 22 C -0.04 -1.46 10.14 22.57 0.23 -1.23 16 23 C -0.08 -2.61 6.89 40.35 0.28 -2.33 16 24 C 0.60 17.61 8.05 86.45 0.70 18.31 16 25 N -0.83 -18.60 8.85 -176.39 -1.56 -20.16 16 26 O -0.58 -19.18 15.61 -4.32 -0.07 -19.24 16 27 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 28 H 0.09 1.93 6.54 -2.38 -0.02 1.91 16 29 H 0.12 1.31 8.12 -2.39 -0.02 1.29 16 30 H 0.22 3.81 8.06 -2.91 -0.02 3.79 16 31 H 0.02 1.15 8.11 -2.39 -0.02 1.14 16 32 H 0.02 1.23 6.91 -2.39 -0.02 1.21 16 33 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 34 H 0.08 2.62 8.11 -2.39 -0.02 2.60 16 35 H 0.09 2.45 7.34 -2.38 -0.02 2.43 16 36 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 37 H 0.10 2.45 8.03 -2.39 -0.02 2.43 16 38 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.15 5.26 7.49 -2.91 -0.02 5.24 16 42 H 0.42 8.38 7.77 -92.71 -0.72 7.66 16 43 H 0.42 7.45 8.93 -92.70 -0.83 6.63 16 Total: -1.00 -74.25 381.00 -1.70 -75.95 By element: Atomic # 1 Polarization: 30.61 SS G_CDS: -0.49 Total: 30.12 kcal Atomic # 6 Polarization: -29.31 SS G_CDS: 5.82 Total: -23.49 kcal Atomic # 7 Polarization: -120.86 SS G_CDS: -4.40 Total: -125.27 kcal Atomic # 8 Polarization: -101.31 SS G_CDS: -4.32 Total: -105.63 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Atomic # 16 Polarization: 104.71 SS G_CDS: -0.33 Total: 104.38 kcal Total: -74.25 -1.70 -75.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103495812.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.441 kcal (2) G-P(sol) polarization free energy of solvation -74.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds