Wall clock time and date at job start Sat Apr 11 2020 06:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47361 * 2 1 4 4 N 1.46506 * 109.47322 * 179.97438 * 3 2 1 5 5 C 1.46501 * 119.99568 * 269.14724 * 4 3 2 6 6 C 1.52999 * 109.47098 * 266.41355 * 5 4 3 7 7 N 1.46498 * 109.46968 * 180.02562 * 6 5 4 8 8 C 1.34772 * 120.00076 * 180.02562 * 7 6 5 9 9 O 1.21290 * 120.00020 * 359.97438 * 8 7 6 10 10 C 1.50706 * 120.00257 * 179.97438 * 8 7 6 11 11 S 1.81002 * 109.47119 * 179.97438 * 10 8 7 12 12 C 1.76199 * 99.99939 * 179.97438 * 11 10 8 13 13 H 1.08000 * 119.99749 * 0.02562 * 12 11 10 14 14 C 1.38803 * 120.00050 * 179.97438 * 12 11 10 15 15 N 1.31624 * 119.99983 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99793 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47241 * 60.00339 * 16 14 12 18 18 H 1.48504 * 109.47029 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46956 * 299.99901 * 16 14 12 20 20 C 1.34773 * 119.99913 * 89.14604 * 4 3 2 21 21 O 1.21493 * 120.00196 * 354.66978 * 20 4 3 22 22 C 1.48335 * 119.99760 * 174.94493 * 20 4 3 23 23 C 1.42272 * 126.93485 * 174.24347 * 22 20 4 24 24 C 1.35319 * 103.91644 * 179.85297 * 23 22 20 25 25 O 1.34010 * 106.67261 * 0.40569 * 24 23 22 26 26 N 1.20911 * 111.84206 * 359.72364 * 25 24 23 27 27 H 1.08999 * 109.47271 * 300.00533 * 1 2 3 28 28 H 1.09001 * 109.46754 * 60.00058 * 1 2 3 29 29 H 1.08993 * 109.47689 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47271 * 239.99467 * 2 1 3 31 31 H 1.09007 * 109.46657 * 119.99506 * 2 1 3 32 32 H 1.08999 * 109.47363 * 59.99523 * 3 2 1 33 33 H 1.09001 * 109.47139 * 299.99707 * 3 2 1 34 34 H 1.08995 * 109.47136 * 26.42064 * 5 4 3 35 35 H 1.09004 * 109.46782 * 146.42043 * 5 4 3 36 36 H 1.09000 * 109.47289 * 300.00551 * 6 5 4 37 37 H 1.08995 * 109.46994 * 60.00650 * 6 5 4 38 38 H 0.96998 * 119.99985 * 359.97438 * 7 6 5 39 39 H 1.09000 * 109.47121 * 299.99915 * 10 8 7 40 40 H 1.08995 * 109.46997 * 59.99912 * 10 8 7 41 41 H 0.96999 * 120.00037 * 179.97438 * 15 14 12 42 42 H 1.07994 * 128.04237 * 359.97438 * 23 22 20 43 43 H 1.08006 * 126.66122 * 180.12683 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.2369 1.4615 1.2696 6 6 4.5699 2.9069 1.6446 7 7 5.3023 2.9259 2.9132 8 6 5.7019 4.0989 3.4432 9 8 5.4555 5.1388 2.8695 10 6 6.4548 4.1185 4.7485 11 16 6.8488 5.8285 5.1921 12 6 7.7007 5.5620 6.7113 13 1 7.8351 4.5581 7.0860 14 6 8.2000 6.6422 7.4258 15 7 8.0366 7.8657 6.9688 16 14 9.1037 6.3595 9.0359 17 1 10.2962 5.5091 8.7916 18 1 9.5331 7.6651 9.5984 19 1 8.1997 5.6798 9.9982 20 6 4.1794 1.4248 -1.1661 21 8 3.5763 1.3113 -2.2147 22 6 5.6584 1.5380 -1.1697 23 6 6.5220 1.4228 -2.2945 24 6 7.7584 1.6050 -1.7756 25 8 7.5982 1.7978 -0.4591 26 7 6.4335 1.7584 -0.1371 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6767 1.9563 0.8899 33 1 1.6767 1.9562 -0.8900 34 1 3.6212 1.0159 2.0508 35 1 5.1601 0.8914 1.1651 36 1 5.1856 3.3524 0.8632 37 1 3.6468 3.4770 1.7491 38 1 5.4990 2.0943 3.3722 39 1 5.8392 3.6727 5.5298 40 1 7.3780 3.5487 4.6440 41 1 8.3852 8.6206 7.4683 42 1 6.2531 1.2356 -3.3235 43 1 8.6931 1.5926 -2.3166 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001759054304.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:37 Heat of formation + Delta-G solvation = -0.683682 kcal Electronic energy + Delta-G solvation = -26872.643926 eV Core-core repulsion = 22855.312792 eV Total energy + Delta-G solvation = -4017.331134 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.40531 -40.41560 -39.07114 -36.86039 -35.05617 -34.23990 -33.34607 -32.41880 -32.05485 -30.24307 -28.14774 -27.23973 -25.48022 -24.49324 -23.40376 -23.15203 -22.05222 -20.51738 -19.97714 -18.30175 -18.06848 -17.77006 -17.41969 -16.70635 -16.25117 -15.98143 -15.39417 -15.27951 -15.12133 -14.79562 -14.61601 -14.14215 -14.05695 -13.83794 -13.65221 -13.61680 -13.16228 -12.62437 -12.54635 -12.44328 -12.28078 -12.23238 -11.80301 -11.67645 -11.48542 -11.08417 -11.03547 -11.03190 -10.79311 -10.76588 -10.59263 -10.07496 -9.82119 -9.45661 -9.17227 -9.05366 -8.85630 -8.22309 -6.48675 -6.20432 -3.90925 0.79019 1.34761 2.25487 2.74213 2.80579 3.07517 3.13397 3.24056 3.27982 3.31052 3.49973 3.81939 4.14736 4.21576 4.48846 4.51696 4.60541 4.65794 4.74092 4.81515 4.89577 5.01359 5.09886 5.14522 5.15572 5.20131 5.27624 5.40551 5.48208 5.58191 5.64046 5.65539 5.72785 5.84540 5.91157 5.92123 6.09314 6.15773 6.58265 6.78866 7.50233 7.60220 7.71154 7.74821 8.36084 8.63940 9.24626 10.86955 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014507 B = 0.002358 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.581344 B =11873.234864 C =13189.725746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.139 4.139 3 C 0.114 3.886 4 N -0.595 5.595 5 C 0.096 3.904 6 C 0.114 3.886 7 N -0.731 5.731 8 C 0.534 3.466 9 O -0.518 6.518 10 C -0.152 4.152 11 S -0.061 6.061 12 C -0.535 4.535 13 H 0.072 0.928 14 C 0.073 3.927 15 N -0.868 5.868 16 Si 0.919 3.081 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.274 1.274 20 C 0.602 3.398 21 O -0.519 6.519 22 C -0.037 4.037 23 C -0.187 4.187 24 C -0.054 4.054 25 O 0.125 5.875 26 N -0.318 5.318 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.398 0.602 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.269 0.731 42 H 0.180 0.820 43 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.267 -19.955 -17.204 27.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.178 4.178 3 C -0.008 4.008 4 N -0.328 5.328 5 C -0.028 4.028 6 C -0.012 4.012 7 N -0.387 5.387 8 C 0.320 3.680 9 O -0.392 6.392 10 C -0.302 4.302 11 S 0.166 5.834 12 C -0.684 4.684 13 H 0.090 0.910 14 C -0.136 4.136 15 N -0.503 5.503 16 Si 0.745 3.255 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.200 1.200 20 C 0.388 3.612 21 O -0.393 6.393 22 C -0.195 4.195 23 C -0.209 4.209 24 C -0.134 4.134 25 O 0.049 5.951 26 N -0.018 5.018 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.115 0.885 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.231 0.769 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.079 0.921 42 H 0.197 0.803 43 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -8.310 -17.884 -17.413 26.308 hybrid contribution 1.039 -1.871 1.046 2.382 sum -7.272 -19.755 -16.367 26.665 Atomic orbital electron populations 1.21687 0.94774 1.02096 1.02174 1.21878 0.96480 0.96718 1.02679 1.21701 0.77405 0.97650 1.03998 1.47691 1.07204 1.72343 1.05517 1.21974 0.98028 0.97538 0.85267 1.21511 0.96851 0.95891 0.86947 1.45738 1.59833 1.09239 1.23844 1.20286 0.78496 0.82943 0.86296 1.90708 1.54673 1.31935 1.61869 1.23516 1.02091 1.08429 0.96203 1.85413 1.72742 0.97537 1.27701 1.22827 1.41895 0.95764 1.07882 0.90976 1.24991 0.95823 0.94438 0.98345 1.70007 1.43564 0.98176 1.38570 0.86226 0.79723 0.77630 0.81926 1.19929 1.20833 1.19960 1.16964 0.83852 0.76604 0.83806 1.90797 1.68252 1.49241 1.31034 1.23506 0.96586 1.08370 0.91063 1.22736 0.90815 1.06102 1.01291 1.26090 1.01401 1.02372 0.83575 1.84874 1.21418 1.64052 1.24740 1.74465 0.89689 1.14741 1.22939 0.92412 0.92356 0.92354 0.91378 0.91755 0.89676 0.89434 0.89262 0.88454 0.91213 0.91799 0.76852 0.89245 0.89137 0.92141 0.80263 0.75918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.91 37.16 0.37 -0.53 16 2 C -0.14 -1.00 6.26 -26.74 -0.17 -1.17 16 3 C 0.11 0.95 5.34 -4.04 -0.02 0.92 16 4 N -0.60 -5.86 2.48 -174.62 -0.43 -6.29 16 5 C 0.10 0.86 5.07 -4.04 -0.02 0.84 16 6 C 0.11 1.41 5.44 -4.04 -0.02 1.39 16 7 N -0.73 -9.76 5.56 -60.29 -0.33 -10.09 16 8 C 0.53 10.05 7.85 -10.98 -0.09 9.96 16 9 O -0.52 -12.04 15.86 5.55 0.09 -11.95 16 10 C -0.15 -3.05 6.16 36.01 0.22 -2.83 16 11 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 12 C -0.54 -15.24 9.50 30.94 0.29 -14.95 16 13 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 14 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 15 N -0.87 -26.23 13.22 55.49 0.73 -25.50 16 16 Si 0.92 21.37 29.55 -169.99 -5.02 16.34 16 17 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 20 C 0.60 7.09 7.67 -12.11 -0.09 6.99 16 21 O -0.52 -7.21 16.61 5.37 0.09 -7.12 16 22 C -0.04 -0.40 6.66 -82.53 -0.55 -0.95 16 23 C -0.19 -1.51 11.00 -39.07 -0.43 -1.94 16 24 C -0.05 -0.33 12.28 29.69 0.36 0.03 16 25 O 0.13 1.19 11.18 17.26 0.19 1.38 16 26 N -0.32 -3.47 7.13 33.29 0.24 -3.23 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 32 H 0.08 0.60 8.06 -51.93 -0.42 0.18 16 33 H 0.09 0.81 7.53 -51.93 -0.39 0.42 16 34 H 0.09 0.61 8.04 -51.93 -0.42 0.19 16 35 H 0.10 0.89 5.79 -51.93 -0.30 0.59 16 36 H 0.07 1.03 6.53 -51.93 -0.34 0.69 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.40 3.99 8.47 -40.82 -0.35 3.65 16 39 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 40 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 41 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 42 H 0.18 1.15 8.06 -52.49 -0.42 0.72 16 43 H 0.22 0.34 8.06 -52.48 -0.42 -0.08 16 LS Contribution 383.89 15.07 5.79 5.79 Total: -1.00 -37.44 383.89 -7.10 -44.54 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -5.99 Total: 0.22 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: -0.24 Total: -0.23 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: 0.20 Total: -45.11 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: 0.37 Total: -17.68 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -37.44 -7.10 -44.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759054304.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.856 kcal (2) G-P(sol) polarization free energy of solvation -37.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds