Wall clock time and date at job start Sat Apr 11 2020 06:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47361 * 2 1 4 4 N 1.46506 * 109.47322 * 179.97438 * 3 2 1 5 5 C 1.46501 * 119.99568 * 269.14724 * 4 3 2 6 6 C 1.52999 * 109.47098 * 266.41355 * 5 4 3 7 7 N 1.46498 * 109.46968 * 180.02562 * 6 5 4 8 8 C 1.34772 * 120.00076 * 180.02562 * 7 6 5 9 9 O 1.21290 * 120.00020 * 359.97438 * 8 7 6 10 10 C 1.50706 * 120.00257 * 179.97438 * 8 7 6 11 11 S 1.81002 * 109.47119 * 179.97438 * 10 8 7 12 12 C 1.76199 * 99.99939 * 179.97438 * 11 10 8 13 13 H 1.08000 * 119.99749 * 0.02562 * 12 11 10 14 14 C 1.38803 * 120.00050 * 179.97438 * 12 11 10 15 15 N 1.31624 * 119.99983 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99793 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47241 * 60.00339 * 16 14 12 18 18 H 1.48504 * 109.47029 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46956 * 299.99901 * 16 14 12 20 20 C 1.34773 * 119.99913 * 89.14604 * 4 3 2 21 21 O 1.21493 * 120.00196 * 354.66978 * 20 4 3 22 22 C 1.48335 * 119.99760 * 174.94493 * 20 4 3 23 23 C 1.42272 * 126.93485 * 174.24347 * 22 20 4 24 24 C 1.35319 * 103.91644 * 179.85297 * 23 22 20 25 25 O 1.34010 * 106.67261 * 0.40569 * 24 23 22 26 26 N 1.20911 * 111.84206 * 359.72364 * 25 24 23 27 27 H 1.08999 * 109.47271 * 300.00533 * 1 2 3 28 28 H 1.09001 * 109.46754 * 60.00058 * 1 2 3 29 29 H 1.08993 * 109.47689 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47271 * 239.99467 * 2 1 3 31 31 H 1.09007 * 109.46657 * 119.99506 * 2 1 3 32 32 H 1.08999 * 109.47363 * 59.99523 * 3 2 1 33 33 H 1.09001 * 109.47139 * 299.99707 * 3 2 1 34 34 H 1.08995 * 109.47136 * 26.42064 * 5 4 3 35 35 H 1.09004 * 109.46782 * 146.42043 * 5 4 3 36 36 H 1.09000 * 109.47289 * 300.00551 * 6 5 4 37 37 H 1.08995 * 109.46994 * 60.00650 * 6 5 4 38 38 H 0.96998 * 119.99985 * 359.97438 * 7 6 5 39 39 H 1.09000 * 109.47121 * 299.99915 * 10 8 7 40 40 H 1.08995 * 109.46997 * 59.99912 * 10 8 7 41 41 H 0.96999 * 120.00037 * 179.97438 * 15 14 12 42 42 H 1.07994 * 128.04237 * 359.97438 * 23 22 20 43 43 H 1.08006 * 126.66122 * 180.12683 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.2369 1.4615 1.2696 6 6 4.5699 2.9069 1.6446 7 7 5.3023 2.9259 2.9132 8 6 5.7019 4.0989 3.4432 9 8 5.4555 5.1388 2.8695 10 6 6.4548 4.1185 4.7485 11 16 6.8488 5.8285 5.1921 12 6 7.7007 5.5620 6.7113 13 1 7.8351 4.5581 7.0860 14 6 8.2000 6.6422 7.4258 15 7 8.0366 7.8657 6.9688 16 14 9.1037 6.3595 9.0359 17 1 10.2962 5.5091 8.7916 18 1 9.5331 7.6651 9.5984 19 1 8.1997 5.6798 9.9982 20 6 4.1794 1.4248 -1.1661 21 8 3.5763 1.3113 -2.2147 22 6 5.6584 1.5380 -1.1697 23 6 6.5220 1.4228 -2.2945 24 6 7.7584 1.6050 -1.7756 25 8 7.5982 1.7978 -0.4591 26 7 6.4335 1.7584 -0.1371 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6767 1.9563 0.8899 33 1 1.6767 1.9562 -0.8900 34 1 3.6212 1.0159 2.0508 35 1 5.1601 0.8914 1.1651 36 1 5.1856 3.3524 0.8632 37 1 3.6468 3.4770 1.7491 38 1 5.4990 2.0943 3.3722 39 1 5.8392 3.6727 5.5298 40 1 7.3780 3.5487 4.6440 41 1 8.3852 8.6206 7.4683 42 1 6.2531 1.2356 -3.3235 43 1 8.6931 1.5926 -2.3166 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001759054304.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:35 Heat of formation + Delta-G solvation = -27.211231 kcal Electronic energy + Delta-G solvation = -26873.794247 eV Core-core repulsion = 22855.312792 eV Total energy + Delta-G solvation = -4018.481455 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -46.10526 -41.29463 -40.50768 -37.78848 -36.00758 -35.14079 -34.56765 -34.11284 -32.71005 -31.61253 -29.31080 -27.98814 -27.62580 -25.27358 -24.24903 -23.88863 -22.66951 -21.88840 -20.74934 -19.85795 -18.99940 -18.76854 -18.25484 -17.72184 -17.53276 -17.14896 -16.86137 -16.68294 -16.19432 -15.92040 -15.74349 -15.39747 -15.07406 -14.79891 -14.72908 -14.42299 -14.25351 -14.21671 -13.63587 -13.47275 -13.15229 -13.04822 -12.90687 -12.85924 -12.76772 -12.61637 -12.38722 -12.24988 -11.73916 -11.67691 -11.57541 -11.43783 -11.11172 -11.02263 -10.70767 -10.25801 -10.12839 -10.02433 -8.65224 -8.32750 -6.10933 0.03489 0.76216 1.24955 1.42528 1.45484 1.52593 1.62041 1.62931 1.91628 2.19774 2.29258 2.39942 2.81920 3.01335 3.34157 3.48443 3.73314 3.77265 3.92881 4.00161 4.01795 4.06254 4.22367 4.30074 4.32379 4.34780 4.49631 4.53725 4.56550 4.61956 4.69454 4.85680 4.92017 4.97154 5.13219 5.15925 5.23311 5.36188 5.43499 5.43969 5.95981 6.21506 6.49654 6.68367 7.04821 7.08374 7.24823 8.76243 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014507 B = 0.002358 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.581344 B =11873.234864 C =13189.725746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.131 4.131 3 C 0.110 3.890 4 N -0.592 5.592 5 C 0.107 3.893 6 C 0.119 3.881 7 N -0.702 5.702 8 C 0.536 3.464 9 O -0.569 6.569 10 C -0.126 4.126 11 S -0.155 6.155 12 C -0.545 4.545 13 H 0.084 0.916 14 C 0.012 3.988 15 N -0.912 5.912 16 Si 0.999 3.001 17 H -0.261 1.261 18 H -0.280 1.280 19 H -0.262 1.262 20 C 0.595 3.405 21 O -0.550 6.550 22 C -0.060 4.060 23 C -0.204 4.204 24 C -0.028 4.028 25 O 0.114 5.886 26 N -0.337 5.337 27 H 0.066 0.934 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.049 0.951 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.073 0.927 34 H 0.122 0.878 35 H 0.102 0.898 36 H 0.046 0.954 37 H 0.056 0.944 38 H 0.419 0.581 39 H 0.113 0.887 40 H 0.111 0.889 41 H 0.271 0.729 42 H 0.192 0.808 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.543 -22.545 -16.142 28.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.169 4.169 3 C -0.012 4.012 4 N -0.323 5.323 5 C -0.017 4.017 6 C -0.007 4.007 7 N -0.356 5.356 8 C 0.322 3.678 9 O -0.448 6.448 10 C -0.277 4.277 11 S 0.072 5.928 12 C -0.693 4.693 13 H 0.102 0.898 14 C -0.193 4.193 15 N -0.549 5.549 16 Si 0.820 3.180 17 H -0.186 1.186 18 H -0.205 1.205 19 H -0.186 1.186 20 C 0.382 3.618 21 O -0.427 6.427 22 C -0.217 4.217 23 C -0.226 4.226 24 C -0.108 4.108 25 O 0.039 5.961 26 N -0.038 5.038 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.094 0.906 32 H 0.120 0.880 33 H 0.091 0.909 34 H 0.140 0.860 35 H 0.120 0.880 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.256 0.744 39 H 0.131 0.869 40 H 0.130 0.870 41 H 0.080 0.920 42 H 0.209 0.791 43 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -7.600 -20.548 -16.339 27.330 hybrid contribution 0.795 -1.132 0.587 1.503 sum -6.805 -21.680 -15.752 27.649 Atomic orbital electron populations 1.21676 0.93777 1.02634 1.02411 1.21800 0.97254 0.95612 1.02277 1.21853 0.76583 0.98591 1.04132 1.47788 1.07840 1.71358 1.05316 1.21944 0.98954 0.95136 0.85643 1.21517 0.95659 0.98082 0.85428 1.45388 1.58051 1.08462 1.23734 1.20085 0.78327 0.83607 0.85796 1.90700 1.56907 1.34088 1.63072 1.23344 1.03688 1.03152 0.97559 1.85627 1.73454 1.04932 1.28761 1.23171 1.41773 0.96487 1.07822 0.89754 1.26142 0.96615 0.93966 1.02530 1.70182 1.44921 0.99329 1.40455 0.84999 0.78553 0.77781 0.76637 1.18566 1.20549 1.18613 1.17244 0.84458 0.76207 0.83896 1.90767 1.68982 1.50865 1.32056 1.23645 0.96363 1.09353 0.92342 1.23029 0.91150 1.06990 1.01479 1.26922 1.02489 0.99292 0.82078 1.84824 1.20873 1.63956 1.26452 1.74442 0.90161 1.15798 1.23434 0.91461 0.92856 0.91665 0.93244 0.90593 0.87962 0.90888 0.86042 0.88048 0.93566 0.92603 0.74385 0.86863 0.87038 0.92042 0.79093 0.71265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.91 71.98 0.71 -0.86 16 2 C -0.13 -1.74 6.26 30.59 0.19 -1.55 16 3 C 0.11 1.74 5.34 86.38 0.46 2.20 16 4 N -0.59 -11.26 2.48 -824.67 -2.04 -13.30 16 5 C 0.11 1.72 5.07 86.38 0.44 2.16 16 6 C 0.12 2.83 5.44 86.38 0.47 3.30 16 7 N -0.70 -17.39 5.56 -463.06 -2.57 -19.97 16 8 C 0.54 19.77 7.85 87.66 0.69 20.46 16 9 O -0.57 -27.00 15.86 -3.06 -0.05 -27.05 16 10 C -0.13 -4.91 6.16 71.24 0.44 -4.47 16 11 S -0.15 -8.60 20.57 -56.49 -1.16 -9.76 16 12 C -0.54 -30.88 9.50 67.96 0.65 -30.23 16 13 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 14 C 0.01 0.69 5.49 84.86 0.47 1.15 16 15 N -0.91 -56.13 13.22 21.65 0.29 -55.84 16 16 Si 1.00 43.26 29.55 68.60 2.03 45.28 16 17 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 18 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 19 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 20 C 0.60 14.17 7.67 86.93 0.67 14.83 16 21 O -0.55 -15.78 16.61 -3.69 -0.06 -15.84 16 22 C -0.06 -1.27 6.66 42.96 0.29 -0.99 16 23 C -0.20 -3.11 11.00 22.60 0.25 -2.86 16 24 C -0.03 -0.29 12.28 67.15 0.82 0.54 16 25 O 0.11 2.01 11.18 71.93 0.80 2.82 16 26 N -0.34 -7.11 7.13 -49.51 -0.35 -7.46 16 27 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 32 H 0.10 1.26 8.06 -2.39 -0.02 1.24 16 33 H 0.07 1.38 7.53 -2.39 -0.02 1.36 16 34 H 0.12 1.23 8.04 -2.39 -0.02 1.21 16 35 H 0.10 1.65 5.79 -2.38 -0.01 1.64 16 36 H 0.05 1.37 6.53 -2.39 -0.02 1.36 16 37 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.42 7.03 8.47 -92.71 -0.79 6.25 16 39 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 40 H 0.11 3.88 8.14 -2.40 -0.02 3.86 16 41 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 42 H 0.19 2.30 8.06 -2.91 -0.02 2.28 16 43 H 0.27 -0.22 8.06 -2.91 -0.02 -0.24 16 Total: -1.00 -85.50 383.89 3.67 -81.83 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 0.25 Total: 15.61 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: 6.54 Total: 3.68 kcal Atomic # 7 Polarization: -91.89 SS G_CDS: -4.68 Total: -96.57 kcal Atomic # 8 Polarization: -40.76 SS G_CDS: 0.69 Total: -40.07 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Atomic # 16 Polarization: -8.60 SS G_CDS: -1.16 Total: -9.76 kcal Total: -85.50 3.67 -81.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759054304.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.619 kcal (2) G-P(sol) polarization free energy of solvation -85.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds