Wall clock time and date at job start Sat Apr 11 2020 06:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31809 * 119.12396 * 2 1 4 4 C 1.32313 * 120.81954 * 179.72922 * 3 2 1 5 5 C 1.38624 * 119.10338 * 0.57390 * 4 3 2 6 6 C 1.38574 * 118.39673 * 359.43958 * 5 4 3 7 7 C 1.50703 * 120.44930 * 180.30273 * 6 5 4 8 8 S 1.81402 * 109.47334 * 90.00002 * 7 6 5 9 9 O 1.42105 * 108.57505 * 294.48906 * 8 7 6 10 10 O 1.42089 * 108.57792 * 65.51459 * 8 7 6 11 11 C 1.81404 * 101.92108 * 180.02562 * 8 7 6 12 12 C 1.52992 * 109.47020 * 179.97438 * 11 8 7 13 13 C 1.50693 * 109.47379 * 179.97438 * 12 11 8 14 14 O 1.21285 * 119.99917 * 0.02562 * 13 12 11 15 15 N 1.34776 * 120.00730 * 179.97438 * 13 12 11 16 16 C 1.46505 * 119.99525 * 0.02562 * 15 13 12 17 17 C 1.46499 * 120.00579 * 180.02562 * 15 13 12 18 18 C 1.50696 * 109.46994 * 89.99913 * 17 15 13 19 19 H 1.07993 * 120.00230 * 0.02562 * 18 17 15 20 20 C 1.37878 * 119.99683 * 180.02562 * 18 17 15 21 21 N 1.31517 * 120.00147 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99907 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47070 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46929 * 119.99844 * 22 20 18 25 25 H 1.48498 * 109.47334 * 239.99822 * 22 20 18 26 26 N 1.31789 * 119.12383 * 180.02562 * 2 1 3 27 27 H 1.09003 * 109.46874 * 269.97291 * 1 2 3 28 28 H 1.08996 * 109.47587 * 29.97672 * 1 2 3 29 29 H 1.09003 * 109.47510 * 149.98054 * 1 2 3 30 30 H 1.07999 * 120.44989 * 180.31173 * 4 3 2 31 31 H 1.08002 * 120.80485 * 179.72100 * 5 4 3 32 32 H 1.08994 * 109.47205 * 210.00199 * 7 6 5 33 33 H 1.09006 * 109.46751 * 329.99943 * 7 6 5 34 34 H 1.09000 * 109.46457 * 299.99839 * 11 8 7 35 35 H 1.08998 * 109.47059 * 59.99451 * 11 8 7 36 36 H 1.09001 * 109.47062 * 299.99995 * 12 11 8 37 37 H 1.09007 * 109.47351 * 59.99875 * 12 11 8 38 38 H 1.08999 * 109.47244 * 89.99631 * 16 15 13 39 39 H 1.09003 * 109.46961 * 210.00156 * 16 15 13 40 40 H 1.09000 * 109.47049 * 329.99473 * 16 15 13 41 41 H 1.08997 * 109.47182 * 210.00203 * 17 15 13 42 42 H 1.09005 * 109.46711 * 330.00194 * 17 15 13 43 43 H 0.97004 * 120.00078 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1485 1.1514 0.0000 4 6 3.4710 1.1906 0.0054 5 6 4.1809 -0.0001 -0.0011 6 6 3.4713 -1.1904 -0.0011 7 6 4.1961 -2.5116 -0.0011 8 16 4.4870 -3.0418 1.7092 9 8 5.3812 -2.1230 2.3220 10 8 3.2318 -3.3023 2.3221 11 6 5.3526 -4.6181 1.4707 12 6 5.6876 -5.2272 2.8336 13 6 6.4062 -6.5369 2.6356 14 8 6.6289 -6.9430 1.5147 15 7 6.8023 -7.2566 3.7041 16 6 6.5338 -6.7658 5.0581 17 6 7.5013 -8.5296 3.5115 18 6 8.9863 -8.2821 3.4445 19 1 9.3710 -7.2772 3.5366 20 6 9.8539 -9.3386 3.2657 21 7 9.3855 -10.5625 3.1541 22 14 11.6947 -9.0320 3.1833 23 1 11.9618 -7.5793 3.3362 24 1 12.3699 -9.7766 4.2764 25 1 12.2158 -9.4964 1.8726 26 7 2.1484 -1.1513 -0.0005 27 1 -0.3633 -0.0005 1.0277 28 1 -0.3634 0.8901 -0.5134 29 1 -0.3634 -0.8898 -0.5141 30 1 3.9905 2.1374 0.0104 31 1 5.2609 -0.0002 -0.0015 32 1 3.5906 -3.2582 -0.5149 33 1 5.1511 -2.4021 -0.5150 34 1 4.7133 -5.3029 0.9135 35 1 6.2736 -4.4462 0.9136 36 1 6.3270 -4.5421 3.3904 37 1 4.7668 -5.3990 3.3911 38 1 5.5665 -7.1387 5.3946 39 1 7.3138 -7.1176 5.7334 40 1 6.5215 -5.6759 5.0537 41 1 7.2811 -9.1949 4.3464 42 1 7.1674 -8.9904 2.5818 43 1 9.9958 -11.3058 3.0279 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771685978.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:54 Heat of formation + Delta-G solvation = -85.796107 kcal Electronic energy + Delta-G solvation = -26684.298992 eV Core-core repulsion = 22663.277106 eV Total energy + Delta-G solvation = -4021.021886 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.19702 -40.70765 -38.14712 -37.20881 -36.67236 -35.81017 -34.84317 -34.48793 -34.06874 -30.75240 -29.94149 -29.28228 -27.48874 -26.48131 -24.75547 -24.13113 -23.33245 -20.10473 -20.01115 -18.86704 -18.72843 -18.48945 -17.85451 -17.38068 -17.30079 -17.05217 -16.58227 -16.49088 -16.27156 -16.12276 -16.00525 -15.07583 -14.74262 -14.47782 -14.32017 -14.10904 -13.81395 -13.75394 -13.64272 -13.58561 -13.46658 -13.25296 -13.21278 -13.15640 -13.04955 -12.84097 -12.65035 -12.54353 -12.44205 -12.22230 -11.98251 -11.91601 -11.68232 -11.47149 -10.69475 -10.65773 -10.46599 -10.40481 -9.45663 -8.23448 -6.38299 -1.34081 -0.20866 -0.02300 1.37185 1.38680 1.50899 1.60997 1.75628 2.18411 2.35408 2.47433 2.58493 2.80084 2.95588 3.02181 3.06299 3.29947 3.37564 3.69733 3.74436 3.80519 3.98784 4.08287 4.25851 4.36320 4.40208 4.45877 4.52978 4.55908 4.68506 4.71390 4.83469 4.84888 4.94996 5.01173 5.02143 5.21776 5.36249 5.54229 5.80679 5.87031 6.04411 6.66962 6.74756 6.94979 7.25632 7.41540 8.83838 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.026456 B = 0.002109 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.122045 B =13272.994792 C =13657.709108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.301 3.699 3 N -0.532 5.532 4 C 0.152 3.848 5 C -0.222 4.222 6 C 0.154 3.846 7 C -0.560 4.560 8 S 2.436 3.564 9 O -0.953 6.953 10 O -0.959 6.959 11 C -0.587 4.587 12 C -0.134 4.134 13 C 0.502 3.498 14 O -0.587 6.587 15 N -0.611 5.611 16 C 0.070 3.930 17 C 0.256 3.744 18 C -0.542 4.542 19 H 0.055 0.945 20 C 0.005 3.995 21 N -0.929 5.929 22 Si 0.969 3.031 23 H -0.266 1.266 24 H -0.271 1.271 25 H -0.281 1.281 26 N -0.531 5.531 27 H 0.095 0.905 28 H 0.100 0.900 29 H 0.093 0.907 30 H 0.212 0.788 31 H 0.187 0.813 32 H 0.177 0.823 33 H 0.197 0.803 34 H 0.152 0.848 35 H 0.155 0.845 36 H 0.126 0.874 37 H 0.127 0.873 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.094 0.906 41 H 0.024 0.976 42 H 0.002 0.998 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.494 23.796 -5.356 27.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.034 3.966 3 N -0.248 5.248 4 C -0.014 4.014 5 C -0.244 4.244 6 C 0.007 3.993 7 C -0.688 4.688 8 S 2.620 3.380 9 O -0.950 6.950 10 O -0.956 6.956 11 C -0.717 4.717 12 C -0.174 4.174 13 C 0.290 3.710 14 O -0.468 6.468 15 N -0.342 5.342 16 C -0.072 4.072 17 C 0.135 3.865 18 C -0.581 4.581 19 H 0.074 0.926 20 C -0.194 4.194 21 N -0.568 5.568 22 Si 0.794 3.206 23 H -0.190 1.190 24 H -0.196 1.196 25 H -0.207 1.207 26 N -0.247 5.247 27 H 0.113 0.887 28 H 0.119 0.881 29 H 0.111 0.889 30 H 0.228 0.772 31 H 0.205 0.795 32 H 0.194 0.806 33 H 0.214 0.786 34 H 0.170 0.830 35 H 0.173 0.827 36 H 0.144 0.856 37 H 0.145 0.855 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.113 0.887 41 H 0.042 0.958 42 H 0.020 0.980 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.573 23.808 -5.123 28.380 hybrid contribution 2.129 -1.030 -0.794 2.494 sum -12.444 22.778 -5.916 26.621 Atomic orbital electron populations 1.20720 0.83610 1.05232 1.04911 1.23914 0.99750 0.82978 0.89938 1.68368 1.11400 1.30257 1.14742 1.24025 0.89142 1.00323 0.87931 1.23304 1.05207 0.93294 1.02615 1.20827 0.90011 0.94636 0.93803 1.29417 1.11865 1.02334 1.25216 1.07592 0.75097 0.77317 0.77988 1.93564 1.66290 1.61679 1.73507 1.93568 1.42923 1.85333 1.73727 1.30096 1.16249 1.19832 1.05516 1.21497 1.03741 0.95057 0.97153 1.20873 0.79296 0.86594 0.84257 1.90628 1.58629 1.72330 1.25256 1.48196 1.55943 1.22715 1.07377 1.22040 1.02105 1.01029 0.82060 1.18813 0.91014 0.80952 0.95720 1.21734 0.92427 0.93698 1.50213 0.92643 1.25889 1.04309 0.94673 0.94484 1.70060 1.36875 0.99686 1.50210 0.85340 0.78826 0.78574 0.77897 1.18980 1.19633 1.20663 1.68084 1.09832 1.31773 1.15043 0.88656 0.88110 0.88875 0.77152 0.79546 0.80569 0.78589 0.82966 0.82681 0.85579 0.85498 0.90823 0.91173 0.88710 0.95794 0.98010 0.92394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.17 10.32 71.23 0.74 -0.43 16 2 C 0.30 6.09 7.64 138.75 1.06 7.15 16 3 N -0.53 -10.06 10.33 -187.84 -1.94 -12.00 16 4 C 0.15 2.11 11.31 84.71 0.96 3.07 16 5 C -0.22 -3.13 9.86 22.44 0.22 -2.91 16 6 C 0.15 2.82 6.08 42.56 0.26 3.08 16 7 C -0.56 -6.96 6.14 71.24 0.44 -6.52 16 8 S 2.44 45.79 4.70 -56.49 -0.27 45.52 16 9 O -0.95 -22.23 18.10 -127.37 -2.30 -24.53 16 10 O -0.96 -25.23 18.10 -127.37 -2.30 -27.54 16 11 C -0.59 -11.67 5.09 71.98 0.37 -11.30 16 12 C -0.13 -3.43 4.26 29.84 0.13 -3.30 16 13 C 0.50 19.71 7.67 87.66 0.67 20.38 16 14 O -0.59 -28.17 15.56 -3.05 -0.05 -28.22 16 15 N -0.61 -25.36 2.86 -851.13 -2.43 -27.79 16 16 C 0.07 2.04 10.24 127.77 1.31 3.35 16 17 C 0.26 13.66 5.16 85.63 0.44 14.10 16 18 C -0.54 -30.80 9.39 25.60 0.24 -30.56 16 19 H 0.06 3.11 7.81 -2.91 -0.02 3.08 16 20 C 0.01 0.30 5.46 84.65 0.46 0.77 16 21 N -0.93 -55.64 13.29 21.45 0.28 -55.35 16 22 Si 0.97 44.25 29.54 68.60 2.03 46.28 16 23 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 24 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 25 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 26 N -0.53 -11.80 10.27 -176.03 -1.81 -13.61 16 27 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.21 1.13 8.06 -2.91 -0.02 1.11 16 31 H 0.19 1.37 8.06 -2.91 -0.02 1.34 16 32 H 0.18 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.20 0.77 8.10 -2.39 -0.02 0.75 16 34 H 0.15 2.74 8.10 -2.39 -0.02 2.73 16 35 H 0.16 2.71 8.10 -2.39 -0.02 2.69 16 36 H 0.13 2.69 7.40 -2.39 -0.02 2.68 16 37 H 0.13 2.66 8.11 -2.38 -0.02 2.64 16 38 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.07 2.15 8.07 -2.39 -0.02 2.13 16 40 H 0.09 2.08 6.44 -2.39 -0.02 2.07 16 41 H 0.02 1.30 8.07 -2.39 -0.02 1.28 16 42 H 0.00 0.11 7.42 -2.38 -0.02 0.09 16 43 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 Total: -1.00 -90.53 385.44 -0.49 -91.02 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: 1.02 Total: 9.36 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: 7.29 Total: -3.14 kcal Atomic # 7 Polarization: -102.86 SS G_CDS: -5.90 Total: -108.75 kcal Atomic # 8 Polarization: -75.63 SS G_CDS: -4.66 Total: -80.28 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Atomic # 16 Polarization: 45.79 SS G_CDS: -0.27 Total: 45.52 kcal Total: -90.53 -0.49 -91.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771685978.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.219 kcal (2) G-P(sol) polarization free energy of solvation -90.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds