Wall clock time and date at job start Sat Apr 11 2020 06:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 5 5 C 1.38260 * 119.99988 * 279.72365 * 4 2 1 6 6 C 1.38208 * 120.00253 * 179.76700 * 5 4 2 7 7 C 1.38259 * 119.99987 * 0.48510 * 6 5 4 8 8 C 1.38216 * 119.99765 * 359.78762 * 7 6 5 9 9 S 1.76192 * 119.99804 * 179.97438 * 8 7 6 10 10 N 1.65607 * 107.22221 * 269.98039 * 9 8 7 11 11 O 1.42095 * 106.40526 * 23.52231 * 9 8 7 12 12 O 1.42102 * 106.40206 * 156.44321 * 9 8 7 13 13 C 1.38205 * 120.00506 * 99.99978 * 4 2 1 14 14 N 1.46898 * 109.47006 * 120.00340 * 2 1 3 15 15 C 1.46898 * 110.99731 * 176.04807 * 14 2 1 16 16 C 1.46902 * 111.00157 * 299.99853 * 14 2 1 17 17 C 1.50694 * 109.47272 * 169.99926 * 16 14 2 18 18 O 1.21296 * 119.99819 * 0.02562 * 17 16 14 19 19 N 1.34778 * 120.00116 * 180.02562 * 17 16 14 20 20 C 1.37095 * 120.00104 * 180.02562 * 19 17 16 21 21 H 1.08004 * 119.99687 * 359.97438 * 20 19 17 22 22 C 1.38950 * 120.00198 * 180.02562 * 20 19 17 23 23 N 1.31415 * 119.99879 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00145 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.46903 * 59.99887 * 24 22 20 26 26 H 1.48503 * 109.47220 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.46956 * 299.99842 * 24 22 20 28 28 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 30 30 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 31 31 H 1.08002 * 119.99608 * 359.97438 * 5 4 2 32 32 H 1.08000 * 120.00332 * 180.25648 * 6 5 4 33 33 H 1.08004 * 119.99942 * 179.77095 * 7 6 5 34 34 H 0.96995 * 119.99348 * 0.02562 * 10 9 8 35 35 H 0.96994 * 120.00472 * 180.02562 * 10 9 8 36 36 H 1.08000 * 120.00114 * 359.97438 * 13 4 2 37 37 H 1.09002 * 109.47074 * 59.99893 * 15 14 2 38 38 H 1.09005 * 109.47151 * 179.97438 * 15 14 2 39 39 H 1.08994 * 109.47439 * 300.00049 * 15 14 2 40 40 H 1.08995 * 109.47447 * 290.00660 * 16 14 2 41 41 H 1.09009 * 109.46407 * 50.00356 * 16 14 2 42 42 H 0.96997 * 119.99872 * 0.02562 * 19 17 16 43 43 H 0.96997 * 119.99709 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 6 2.0722 -2.0919 -1.2634 6 6 2.5284 -2.7434 -2.3937 7 6 2.9544 -2.0134 -3.4878 8 6 2.9199 -0.6321 -3.4529 9 16 3.4635 0.2982 -4.8469 10 7 5.0833 0.5793 -4.6475 11 8 3.3407 -0.5587 -5.9738 12 8 2.8229 1.5636 -4.7594 13 6 2.4587 0.0194 -2.3241 14 7 2.0197 -0.6926 1.1994 15 6 3.4851 -0.7945 1.1870 16 6 1.5487 -0.0265 2.4211 17 6 1.8579 -0.8913 3.6158 18 8 2.4163 -1.9574 3.4645 19 7 1.5142 -0.4801 4.8525 20 6 1.7960 -1.2666 5.9394 21 1 2.2931 -2.2159 5.8047 22 6 1.4411 -0.8430 7.2143 23 7 0.8348 0.3114 7.3780 24 14 1.8244 -1.9150 8.6952 25 1 3.2910 -2.1303 8.7840 26 1 1.3466 -1.2425 9.9301 27 1 1.1397 -3.2246 8.5488 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.7436 -2.6621 -0.4070 32 1 2.5556 -3.8227 -2.4209 33 1 3.3144 -2.5225 -4.3697 34 1 5.5410 0.2411 -3.8620 35 1 5.5742 1.0821 -5.3160 36 1 2.4315 1.0988 -2.2970 37 1 3.9186 0.2052 1.1591 38 1 3.8210 -1.3110 2.0862 39 1 3.8030 -1.3530 0.3066 40 1 2.0518 0.9344 2.5281 41 1 0.4722 0.1322 2.3563 42 1 1.0674 0.3723 4.9734 43 1 0.5874 0.6073 8.2680 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343064311.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:07 Heat of formation + Delta-G solvation = -72.086521 kcal Electronic energy + Delta-G solvation = -27275.649404 eV Core-core repulsion = 23255.222010 eV Total energy + Delta-G solvation = -4020.427394 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 2.66 seconds Orbital eigenvalues (eV) -40.10586 -38.53073 -37.41440 -36.73533 -36.09841 -33.97219 -33.53509 -32.29897 -31.52753 -31.27077 -29.79783 -27.87822 -24.95039 -24.44721 -23.66045 -22.77052 -20.82627 -19.62080 -19.14611 -18.22220 -17.88178 -17.67433 -16.90160 -16.46612 -16.20160 -15.66410 -15.56918 -14.98816 -14.75330 -14.66092 -14.38878 -13.98222 -13.71949 -13.68421 -13.28355 -13.03949 -12.54452 -12.47649 -12.38537 -12.35423 -12.25140 -12.19600 -11.96304 -11.68018 -11.51427 -11.42226 -11.24807 -11.06185 -10.89300 -10.84815 -10.71897 -10.46950 -10.24520 -9.56045 -9.50002 -9.09515 -8.51248 -8.02689 -7.92799 -6.44809 -3.85797 0.09125 0.57254 1.01516 2.80149 3.14562 3.17222 3.23452 3.27362 3.46539 3.85217 3.87603 4.16084 4.23799 4.50089 4.61947 4.79482 4.98583 5.06696 5.09022 5.19263 5.21566 5.25029 5.46751 5.50417 5.58713 5.61954 5.66786 5.69948 5.78435 5.83659 5.91813 5.94628 6.12399 6.18145 6.23379 6.30330 6.48365 6.59145 6.63887 7.18715 7.29442 7.51838 8.02655 8.58214 9.14704 9.50926 10.02485 10.72795 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.029327 B = 0.002120 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.513107 B =13204.645133 C =13400.480256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.115 3.885 3 H 0.051 0.949 4 C -0.091 4.091 5 C -0.026 4.026 6 C -0.144 4.144 7 C -0.023 4.023 8 C -0.679 4.679 9 S 2.703 3.297 10 N -1.251 6.251 11 O -0.967 6.967 12 O -0.965 6.965 13 C -0.018 4.018 14 N -0.511 5.511 15 C 0.019 3.981 16 C 0.041 3.959 17 C 0.445 3.555 18 O -0.579 6.579 19 N -0.563 5.563 20 C -0.299 4.299 21 H 0.102 0.898 22 C 0.023 3.977 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.273 1.273 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.147 0.853 32 H 0.134 0.866 33 H 0.139 0.861 34 H 0.417 0.583 35 H 0.419 0.581 36 H 0.139 0.861 37 H 0.014 0.986 38 H 0.098 0.902 39 H 0.060 0.940 40 H 0.048 0.952 41 H 0.094 0.906 42 H 0.392 0.608 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.092 1.668 -21.577 22.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.007 3.993 3 H 0.068 0.932 4 C -0.092 4.092 5 C -0.045 4.045 6 C -0.163 4.163 7 C -0.042 4.042 8 C -0.768 4.768 9 S 2.793 3.207 10 N -0.926 5.926 11 O -0.956 6.956 12 O -0.955 6.955 13 C -0.038 4.038 14 N -0.235 5.235 15 C -0.129 4.129 16 C -0.090 4.090 17 C 0.230 3.770 18 O -0.463 6.463 19 N -0.200 5.200 20 C -0.429 4.429 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.165 0.835 32 H 0.152 0.848 33 H 0.157 0.843 34 H 0.244 0.756 35 H 0.249 0.751 36 H 0.157 0.843 37 H 0.033 0.967 38 H 0.116 0.884 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.112 0.888 42 H 0.225 0.775 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.476 0.829 -22.240 22.701 hybrid contribution 0.673 0.605 1.662 1.892 sum 5.150 1.434 -20.578 21.261 Atomic orbital electron populations 1.21936 0.93069 1.03264 1.02086 1.20619 0.96096 0.94835 0.87793 0.93157 1.19936 0.99784 0.94306 0.95183 1.21633 0.91160 0.94247 0.97421 1.21382 1.00798 1.00653 0.93449 1.20944 0.93394 0.91637 0.98261 1.30326 1.20755 1.06936 1.18740 1.01428 0.72372 0.73728 0.73206 1.53063 1.30265 1.73635 1.35603 1.93596 1.85462 1.67947 1.48630 1.93605 1.74028 1.41557 1.86288 1.20798 0.92175 1.00165 0.90660 1.61651 1.11318 1.50794 0.99768 1.22589 0.86465 0.99424 1.04383 1.21954 1.01550 0.95535 0.89954 1.19686 0.85264 0.88295 0.83761 1.90478 1.46485 1.24137 1.85205 1.41858 1.52613 1.20741 1.04789 1.19634 1.36269 1.02929 0.84056 0.87981 1.25261 0.96879 0.96693 0.99083 1.69603 1.40534 1.19966 1.24184 0.85922 0.78907 0.79571 0.79842 1.19935 1.20979 1.19889 0.91327 0.91457 0.92057 0.83541 0.84815 0.84282 0.75555 0.75087 0.84284 0.96744 0.88375 0.92171 0.93374 0.88816 0.77494 0.91797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 8.97 37.16 0.33 -1.31 16 2 C 0.12 1.41 2.28 -68.86 -0.16 1.25 16 3 H 0.05 0.58 8.00 -51.93 -0.42 0.16 16 4 C -0.09 -1.03 3.79 -104.63 -0.40 -1.43 16 5 C -0.03 -0.30 8.05 -39.58 -0.32 -0.61 16 6 C -0.14 -1.37 10.05 -39.58 -0.40 -1.77 16 7 C -0.02 -0.21 9.52 -39.58 -0.38 -0.59 16 8 C -0.68 -6.40 5.94 -39.58 -0.24 -6.63 16 9 S 2.70 23.85 6.28 -107.50 -0.68 23.17 16 10 N -1.25 -6.32 9.55 60.35 0.58 -5.75 16 11 O -0.97 -11.25 17.28 -57.17 -0.99 -12.24 16 12 O -0.97 -11.60 17.28 -57.17 -0.99 -12.59 16 13 C -0.02 -0.19 9.14 -39.59 -0.36 -0.55 16 14 N -0.51 -7.80 3.70 -237.73 -0.88 -8.68 16 15 C 0.02 0.29 8.77 60.06 0.53 0.82 16 16 C 0.04 0.69 5.26 -4.98 -0.03 0.67 16 17 C 0.44 10.02 7.47 -10.99 -0.08 9.94 16 18 O -0.58 -14.83 13.91 5.54 0.08 -14.76 16 19 N -0.56 -13.84 5.29 -10.96 -0.06 -13.90 16 20 C -0.30 -8.14 9.68 -14.93 -0.14 -8.28 16 21 H 0.10 2.90 7.16 -52.48 -0.38 2.53 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.12 13.05 55.50 0.72 -23.40 16 24 Si 0.93 20.70 29.55 -169.99 -5.02 15.68 16 25 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 26 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 27 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.07 0.74 6.20 -51.93 -0.32 0.42 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.15 1.81 7.71 -52.49 -0.40 1.40 16 32 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 33 H 0.14 1.03 7.62 -52.48 -0.40 0.63 16 34 H 0.42 1.34 8.92 -34.47 -0.31 1.03 16 35 H 0.42 1.41 8.96 -34.48 -0.31 1.10 16 36 H 0.14 1.29 7.60 -52.49 -0.40 0.89 16 37 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 38 H 0.10 1.84 5.82 -51.93 -0.30 1.54 16 39 H 0.06 0.82 6.10 -51.93 -0.32 0.50 16 40 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 41 H 0.09 1.43 5.83 -51.92 -0.30 1.12 16 42 H 0.39 9.24 7.90 -40.82 -0.32 8.91 16 43 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 368.36 15.07 5.55 5.55 Total: -1.00 -35.10 368.36 -8.84 -43.94 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -5.42 Total: 10.97 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -1.73 Total: -8.00 kcal Atomic # 7 Polarization: -52.09 SS G_CDS: 0.36 Total: -51.72 kcal Atomic # 8 Polarization: -37.68 SS G_CDS: -1.90 Total: -39.58 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: 23.85 SS G_CDS: -0.68 Total: 23.17 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.10 -8.84 -43.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343064311.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.144 kcal (2) G-P(sol) polarization free energy of solvation -35.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.66 seconds