Wall clock time and date at job start Sat Apr 11 2020 06:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 5 5 C 1.38260 * 119.99988 * 279.72365 * 4 2 1 6 6 C 1.38208 * 120.00253 * 179.76700 * 5 4 2 7 7 C 1.38259 * 119.99987 * 0.48510 * 6 5 4 8 8 C 1.38216 * 119.99765 * 359.78762 * 7 6 5 9 9 S 1.76192 * 119.99804 * 179.97438 * 8 7 6 10 10 N 1.65607 * 107.22221 * 269.98039 * 9 8 7 11 11 O 1.42095 * 106.40526 * 23.52231 * 9 8 7 12 12 O 1.42102 * 106.40206 * 156.44321 * 9 8 7 13 13 C 1.38205 * 120.00506 * 99.99978 * 4 2 1 14 14 N 1.46898 * 109.47006 * 120.00340 * 2 1 3 15 15 C 1.46898 * 110.99731 * 176.04807 * 14 2 1 16 16 C 1.46902 * 111.00157 * 299.99853 * 14 2 1 17 17 C 1.50694 * 109.47272 * 169.99926 * 16 14 2 18 18 O 1.21296 * 119.99819 * 0.02562 * 17 16 14 19 19 N 1.34778 * 120.00116 * 180.02562 * 17 16 14 20 20 C 1.37095 * 120.00104 * 180.02562 * 19 17 16 21 21 H 1.08004 * 119.99687 * 359.97438 * 20 19 17 22 22 C 1.38950 * 120.00198 * 180.02562 * 20 19 17 23 23 N 1.31415 * 119.99879 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00145 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.46903 * 59.99887 * 24 22 20 26 26 H 1.48503 * 109.47220 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.46956 * 299.99842 * 24 22 20 28 28 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 30 30 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 31 31 H 1.08002 * 119.99608 * 359.97438 * 5 4 2 32 32 H 1.08000 * 120.00332 * 180.25648 * 6 5 4 33 33 H 1.08004 * 119.99942 * 179.77095 * 7 6 5 34 34 H 0.96995 * 119.99348 * 0.02562 * 10 9 8 35 35 H 0.96994 * 120.00472 * 180.02562 * 10 9 8 36 36 H 1.08000 * 120.00114 * 359.97438 * 13 4 2 37 37 H 1.09002 * 109.47074 * 59.99893 * 15 14 2 38 38 H 1.09005 * 109.47151 * 179.97438 * 15 14 2 39 39 H 1.08994 * 109.47439 * 300.00049 * 15 14 2 40 40 H 1.08995 * 109.47447 * 290.00660 * 16 14 2 41 41 H 1.09009 * 109.46407 * 50.00356 * 16 14 2 42 42 H 0.96997 * 119.99872 * 0.02562 * 19 17 16 43 43 H 0.96997 * 119.99709 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 6 2.0722 -2.0919 -1.2634 6 6 2.5284 -2.7434 -2.3937 7 6 2.9544 -2.0134 -3.4878 8 6 2.9199 -0.6321 -3.4529 9 16 3.4635 0.2982 -4.8469 10 7 5.0833 0.5793 -4.6475 11 8 3.3407 -0.5587 -5.9738 12 8 2.8229 1.5636 -4.7594 13 6 2.4587 0.0194 -2.3241 14 7 2.0197 -0.6926 1.1994 15 6 3.4851 -0.7945 1.1870 16 6 1.5487 -0.0265 2.4211 17 6 1.8579 -0.8913 3.6158 18 8 2.4163 -1.9574 3.4645 19 7 1.5142 -0.4801 4.8525 20 6 1.7960 -1.2666 5.9394 21 1 2.2931 -2.2159 5.8047 22 6 1.4411 -0.8430 7.2143 23 7 0.8348 0.3114 7.3780 24 14 1.8244 -1.9150 8.6952 25 1 3.2910 -2.1303 8.7840 26 1 1.3466 -1.2425 9.9301 27 1 1.1397 -3.2246 8.5488 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.7436 -2.6621 -0.4070 32 1 2.5556 -3.8227 -2.4209 33 1 3.3144 -2.5225 -4.3697 34 1 5.5410 0.2411 -3.8620 35 1 5.5742 1.0821 -5.3160 36 1 2.4315 1.0988 -2.2970 37 1 3.9186 0.2052 1.1591 38 1 3.8210 -1.3110 2.0862 39 1 3.8030 -1.3530 0.3066 40 1 2.0518 0.9344 2.5281 41 1 0.4722 0.1322 2.3563 42 1 1.0674 0.3723 4.9734 43 1 0.5874 0.6073 8.2680 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343064311.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:06 Heat of formation + Delta-G solvation = -100.763080 kcal Electronic energy + Delta-G solvation = -27276.892913 eV Core-core repulsion = 23255.222010 eV Total energy + Delta-G solvation = -4021.670903 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.06744 -40.08068 -38.24022 -37.99754 -36.92264 -35.90140 -34.03848 -33.38739 -33.20195 -32.29838 -30.72792 -29.30333 -26.68489 -25.58108 -24.53280 -23.78149 -21.80619 -20.88127 -20.30384 -19.82018 -18.99486 -18.33603 -17.83390 -17.57485 -17.24154 -16.69904 -16.57143 -16.37379 -16.12569 -15.85867 -15.57304 -15.44985 -15.05679 -14.80427 -14.49779 -13.99641 -13.85679 -13.45859 -13.36124 -13.28300 -13.20686 -13.17589 -13.16020 -13.06771 -12.90345 -12.56991 -12.49489 -12.43939 -12.34958 -12.12572 -11.85124 -11.64874 -11.43374 -11.34165 -10.35353 -10.27739 -9.98365 -9.87904 -9.23676 -8.45018 -5.93274 -0.61426 -0.21479 0.23639 1.40095 1.42069 1.52572 2.07772 2.15046 2.27797 2.39012 2.70566 2.80533 3.21863 3.38068 3.41584 3.70895 3.86954 4.06204 4.18471 4.20428 4.23837 4.26594 4.38583 4.47004 4.51472 4.61857 4.64055 4.69132 4.82591 4.90041 4.98046 5.00463 5.16127 5.27809 5.29450 5.31822 5.41834 5.46488 5.79586 5.89348 6.06911 6.19318 6.33579 6.62590 7.14893 7.58981 8.14668 8.72173 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.029327 B = 0.002120 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.513107 B =13204.645133 C =13400.480256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.117 3.883 3 H 0.064 0.936 4 C -0.100 4.100 5 C -0.040 4.040 6 C -0.143 4.143 7 C -0.023 4.023 8 C -0.676 4.676 9 S 2.729 3.271 10 N -1.236 6.236 11 O -0.994 6.994 12 O -0.997 6.997 13 C -0.022 4.022 14 N -0.524 5.524 15 C 0.027 3.973 16 C 0.053 3.947 17 C 0.444 3.556 18 O -0.612 6.612 19 N -0.576 5.576 20 C -0.330 4.330 21 H 0.079 0.921 22 C -0.014 4.014 23 N -0.921 5.921 24 Si 0.991 3.009 25 H -0.272 1.272 26 H -0.272 1.272 27 H -0.272 1.272 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.130 0.870 32 H 0.153 0.847 33 H 0.158 0.842 34 H 0.429 0.571 35 H 0.429 0.571 36 H 0.150 0.850 37 H 0.028 0.972 38 H 0.058 0.942 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.114 0.886 42 H 0.395 0.605 43 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.509 2.187 -22.708 23.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.009 3.991 3 H 0.082 0.918 4 C -0.102 4.102 5 C -0.059 4.059 6 C -0.162 4.162 7 C -0.042 4.042 8 C -0.764 4.764 9 S 2.819 3.181 10 N -0.916 5.916 11 O -0.984 6.984 12 O -0.986 6.986 13 C -0.042 4.042 14 N -0.248 5.248 15 C -0.121 4.121 16 C -0.078 4.078 17 C 0.231 3.769 18 O -0.498 6.498 19 N -0.213 5.213 20 C -0.460 4.460 21 H 0.097 0.903 22 C -0.213 4.213 23 N -0.562 5.562 24 Si 0.815 3.185 25 H -0.197 1.197 26 H -0.197 1.197 27 H -0.198 1.198 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.148 0.852 32 H 0.171 0.829 33 H 0.176 0.824 34 H 0.258 0.742 35 H 0.262 0.738 36 H 0.168 0.832 37 H 0.046 0.954 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.132 0.868 42 H 0.229 0.771 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.896 1.367 -23.389 23.935 hybrid contribution 0.591 0.415 1.899 2.032 sum 5.488 1.781 -21.489 22.250 Atomic orbital electron populations 1.21942 0.92422 1.02891 1.02997 1.20682 0.96614 0.95241 0.86580 0.91792 1.19875 1.00713 0.94344 0.95232 1.21575 0.92276 0.94355 0.97678 1.21596 0.99965 1.01757 0.92852 1.21222 0.92703 0.91613 0.98687 1.30365 1.20469 1.07185 1.18382 1.00461 0.72767 0.72617 0.72281 1.52681 1.28831 1.73601 1.36456 1.93566 1.86270 1.68525 1.50008 1.93570 1.75451 1.42984 1.86613 1.20912 0.92021 1.00743 0.90516 1.61582 1.11280 1.51752 1.00216 1.22425 0.86749 0.99882 1.03048 1.21817 1.03035 0.94768 0.88169 1.20704 0.83286 0.88260 0.84607 1.90460 1.47476 1.25976 1.85922 1.41932 1.53451 1.20806 1.05127 1.19596 1.37687 1.02975 0.85692 0.90281 1.26012 0.96352 0.97881 1.01102 1.69667 1.40745 1.20841 1.24993 0.85016 0.78671 0.77970 0.76856 1.19714 1.19654 1.19773 0.92355 0.91311 0.90338 0.85238 0.82923 0.82402 0.74154 0.73780 0.83236 0.95378 0.92308 0.90673 0.91529 0.86820 0.77093 0.91379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 8.97 71.98 0.65 -2.38 16 2 C 0.12 2.65 2.28 44.17 0.10 2.75 16 3 H 0.06 1.31 8.00 -2.39 -0.02 1.29 16 4 C -0.10 -2.13 3.79 -19.87 -0.08 -2.21 16 5 C -0.04 -0.87 8.05 22.27 0.18 -0.69 16 6 C -0.14 -2.48 10.05 22.27 0.22 -2.26 16 7 C -0.02 -0.37 9.52 22.27 0.21 -0.16 16 8 C -0.68 -11.33 5.94 22.27 0.13 -11.19 16 9 S 2.73 43.06 6.28 -56.49 -0.35 42.70 16 10 N -1.24 -9.54 9.55 37.02 0.35 -9.19 16 11 O -0.99 -21.43 17.28 -128.00 -2.21 -23.64 16 12 O -1.00 -22.40 17.28 -128.00 -2.21 -24.61 16 13 C -0.02 -0.41 9.14 22.27 0.20 -0.21 16 14 N -0.52 -15.61 3.70 -906.04 -3.35 -18.96 16 15 C 0.03 0.81 8.77 127.69 1.12 1.93 16 16 C 0.05 1.74 5.26 85.55 0.45 2.19 16 17 C 0.44 20.37 7.47 87.66 0.66 21.03 16 18 O -0.61 -32.43 13.91 -3.08 -0.04 -32.47 16 19 N -0.58 -28.87 5.29 -306.98 -1.62 -30.49 16 20 C -0.33 -18.40 9.68 84.04 0.81 -17.58 16 21 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 22 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 23 N -0.92 -49.24 13.05 21.66 0.28 -48.95 16 24 Si 0.99 42.46 29.55 68.60 2.03 44.49 16 25 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 26 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 27 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 28 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.07 1.39 6.20 -2.39 -0.01 1.38 16 30 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.13 3.23 7.71 -2.91 -0.02 3.21 16 32 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 33 H 0.16 1.92 7.62 -2.91 -0.02 1.90 16 34 H 0.43 1.59 8.92 -96.75 -0.86 0.73 16 35 H 0.43 1.86 8.96 -96.75 -0.87 0.99 16 36 H 0.15 2.42 7.60 -2.91 -0.02 2.40 16 37 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.06 2.26 5.82 -2.38 -0.01 2.24 16 39 H 0.07 1.99 6.10 -2.39 -0.01 1.98 16 40 H 0.07 1.97 8.12 -2.39 -0.02 1.95 16 41 H 0.11 3.31 5.83 -2.38 -0.01 3.29 16 42 H 0.40 18.89 7.90 -92.71 -0.73 18.16 16 43 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 Total: -1.00 -76.05 368.36 -3.38 -79.43 By element: Atomic # 1 Polarization: 32.11 SS G_CDS: -1.38 Total: 30.74 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: 5.13 Total: -9.04 kcal Atomic # 7 Polarization: -103.25 SS G_CDS: -4.34 Total: -107.59 kcal Atomic # 8 Polarization: -76.26 SS G_CDS: -4.47 Total: -80.72 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Atomic # 16 Polarization: 43.06 SS G_CDS: -0.35 Total: 42.70 kcal Total: -76.05 -3.38 -79.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343064311.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.330 kcal (2) G-P(sol) polarization free energy of solvation -76.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds